PDB Information

PDB5IYB
MethodELECTRON MICROSCOPY
Host OrganismEscherichia coli
Gene SourceHomo sapiens
Primary Citation
Near-atomic resolution visualization of human transcription promoter opening.
He, Y., Yan, C., Fang, J., Inouye, C., Tjian, R., Ivanov, I., Nogales, E.
Nature
HeaderTranscription, Transferase/Dna
Released2016-03-24
Resolution3.900
CATH Insert Date29 May, 2016

PDB Images (41)

PDB Prints

PDB Chains (23)

Chain ID Date inserted into CATH CATH Status
A 30 May, 2016 Holding pen
B 30 May, 2016 Holding pen
C 30 May, 2016 Chopped
D 30 May, 2016 Chopped
E 30 May, 2016 Chopped
F 30 May, 2016 Chopped
G 30 May, 2016 Chopped
H 30 May, 2016 Chopped
I 30 May, 2016 Domchop allotted
J 30 May, 2016 Chopped
K 30 May, 2016 Chopped
L 30 May, 2016 Chopped
M 30 May, 2016 Domchop ready
N 30 May, 2016 Domchop ready
O 30 May, 2016 Chopped
P 30 May, 2016 Chopped
Q 30 May, 2016 Domchop ready
R 30 May, 2016 Domchop ready
S 30 May, 2016 Chopped
T 30 May, 2016 Holding pen
U 30 May, 2016 Holding pen
X 30 May, 2016 Rejected
Y 30 May, 2016 Rejected

CATH Domains (17)

Domain ID Date inserted into CATH Superfamily CATH Status
5iybC01 19 Jul, 2016 3.30.1360.10 Assigned
5iybC02 19 Jul, 2016 2.170.120.12 Assigned
5iybD00 19 Jul, 2016 1.20.1250.40 Assigned
5iybE01 19 Jul, 2016 3.40.1340.10 Assigned
5iybE02 19 Jul, 2016 3.90.940.20 Assigned
5iybF00 19 Jul, 2016 3.90.940.10 Assigned
5iybG01 19 Jul, 2016 3.30.1490.120 Assigned
5iybG02 19 Jul, 2016 2.40.50.140 Assigned
5iybH01 19 Jul, 2016 2.40.50.140 Assigned
5iybJ00 19 Jul, 2016 1.10.10.60 Assigned
5iybK00 19 Jul, 2016 3.30.1360.10 Assigned
5iybL00 19 Jul, 2016 2.20.28.30 Assigned
5iybO01 19 Jul, 2016 1.10.287.190 Assigned
5iybO02 19 Jul, 2016 2.30.18.10 Assigned
5iybP01 19 Jul, 2016 3.30.310.10 Assigned
5iybP02 19 Jul, 2016 3.30.310.10 Assigned
5iybS00 30 Nov, 2016 Holding pen

UniProtKB Entries (21)

Accession Gene ID Taxon Description
P62875 RPAB5_HUMAN Homo sapiens DNA-directed RNA polymerases I, II, and III subunit RPABC5
O15514 RPB4_HUMAN Homo sapiens DNA-directed RNA polymerase II subunit RPB4
P35269 T2FA_HUMAN Homo sapiens General transcription factor IIF subunit 1
P29083 T2EA_HUMAN Homo sapiens General transcription factor IIE subunit 1
P61218 RPAB2_HUMAN Homo sapiens DNA-directed RNA polymerases I, II, and III subunit RPABC2
P52434 RPAB3_HUMAN Homo sapiens DNA-directed RNA polymerases I, II, and III subunit RPABC3
P24928 RPB1_HUMAN Homo sapiens DNA-directed RNA polymerase II subunit RPB1
P53803 RPAB4_HUMAN Homo sapiens DNA-directed RNA polymerases I, II, and III subunit RPABC4
P52657 T2AG_HUMAN Homo sapiens Transcription initiation factor IIA subunit 2
P52655 TF2AA_HUMAN Homo sapiens Transcription initiation factor IIA subunit 1
P19388 RPAB1_HUMAN Homo sapiens DNA-directed RNA polymerases I, II, and III subunit RPABC1
P52435 RPB11_HUMAN Homo sapiens DNA-directed RNA polymerase II subunit RPB11-a
P36954 RPB9_HUMAN Homo sapiens DNA-directed RNA polymerase II subunit RPB9
P19387 RPB3_HUMAN Homo sapiens DNA-directed RNA polymerase II subunit RPB3
P62487 RPB7_HUMAN Homo sapiens DNA-directed RNA polymerase II subunit RPB7
P13984 T2FB_HUMAN Homo sapiens General transcription factor IIF subunit 2
Q00403 TF2B_HUMAN Homo sapiens Transcription initiation factor IIB
P30876 RPB2_HUMAN Homo sapiens DNA-directed RNA polymerase II subunit RPB2
P29084 T2EB_HUMAN Homo sapiens Transcription initiation factor IIE subunit beta
P20226 TBP_HUMAN Homo sapiens TATA-box-binding protein
P23193 TCEA1_HUMAN Homo sapiens Transcription elongation factor A protein 1