PDB 5gth

PDB Information

PDB5GTH
MethodX-RAY DIFFRACTION
Host Organism
Gene Source
Primary Citation
Light-induced structural changes and the site of O=O bond formation in PSII caught by XFEL.
Suga, M., Akita, F., Sugahara, M., Kubo, M., Nakajima, Y., Nakane, T., Yamashita, K., Umena, Y., Nakabayashi, M., Yamane, T., Nakano, T., Suzuki, M., Masuda, T., Inoue, S., Kimura, T., Nomura, T., Yonekura, S., Yu, L.J., Sakamoto, T., Motomura, T., Chen, J.H., Kato, Y., Noguchi, T., Tono, K., Joti, Y., Kameshima, T., Hatsui, T., Nango, E., Tanaka, R., Naitow, H., Matsuura, Y., Yamashita, A., Yamamoto, M., Nureki, O., Yabashi, M., Ishikawa, T., Iwata, S., Shen, J.R.
Nature
HeaderPhotosynthesis
Released2016-08-20
Resolution2.500
CATH Insert Date07 May, 2017

PDB Images (66)

PDB Prints

PDB Chains (39)

Chain ID Date inserted into CATH CATH Status
a 08 May, 2017 Chopped
A 08 May, 2017 Chopped
b 08 May, 2017 Chopped
B 08 May, 2017 Chopped
c 08 May, 2017 Chopped
C 08 May, 2017 Chopped
d 08 May, 2017 Chopped
D 08 May, 2017 Chopped
e 08 May, 2017 Chopped
E 08 May, 2017 Chopped
f 08 May, 2017 Rejected
F 08 May, 2017 Rejected
h 08 May, 2017 Chopped
H 08 May, 2017 Chopped
i 08 May, 2017 Rejected
I 08 May, 2017 Rejected
j 08 May, 2017 Rejected
J 08 May, 2017 Rejected
k 08 May, 2017 Rejected
K 08 May, 2017 Rejected
l 08 May, 2017 Rejected
L 08 May, 2017 Rejected
m 08 May, 2017 Rejected
M 08 May, 2017 Rejected
o 08 May, 2017 Chopped
O 08 May, 2017 Chopped
R 08 May, 2017 Rejected
t 08 May, 2017 Rejected
T 08 May, 2017 Rejected
u 08 May, 2017 Chopped
U 08 May, 2017 Chopped
v 08 May, 2017 Chopped
V 08 May, 2017 Chopped
x 08 May, 2017 Rejected
X 08 May, 2017 Rejected
y 08 May, 2017 Rejected
Y 08 May, 2017 Rejected
z 08 May, 2017 Chopped
Z 08 May, 2017 Chopped

CATH Domains (26)

Domain ID Date inserted into CATH Superfamily CATH Status
5gtha00 12 May, 2017 Holding pen
5gthA00 12 May, 2017 Holding pen
5gthb01 12 May, 2017 Holding pen
5gthB01 12 May, 2017 Holding pen
5gthb02 12 May, 2017 3.10.680.10 Assigned
5gthB02 12 May, 2017 3.10.680.10 Assigned
5gthc01 12 May, 2017 Holding pen
5gthC01 12 May, 2017 Holding pen
5gthc02 12 May, 2017 1.10.10.670 Assigned
5gthC02 12 May, 2017 1.10.10.670 Assigned
5gthd00 12 May, 2017 Holding pen
5gthD00 12 May, 2017 Holding pen
5gthe00 12 May, 2017 1.20.5.860 Assigned
5gthE00 12 May, 2017 1.20.5.860 Assigned
5gthh01 12 May, 2017 1.20.5.880 Assigned
5gthH01 12 May, 2017 1.20.5.880 Assigned
5gtho01 12 May, 2017 2.40.160.30 Assigned
5gthO01 12 May, 2017 2.40.160.30 Assigned
5gtho02 12 May, 2017 3.30.2050.10 Assigned
5gthO02 12 May, 2017 3.30.2050.10 Assigned
5gthu01 12 May, 2017 1.10.150.320 Assigned
5gthU01 12 May, 2017 1.10.150.320 Assigned
5gthv00 12 May, 2017 1.10.760.10 Assigned
5gthV00 12 May, 2017 1.10.760.10 Assigned
5gthz00 12 May, 2017 1.10.287.740 Assigned
5gthZ00 12 May, 2017 1.10.287.740 Assigned

UniProtKB Entries (24)

Accession Gene ID Taxon Description
D0VWR4 PSBX_THEVL Thermosynechococcus vulcanus Photosystem II reaction center protein X
P51765 PSBA_THEVL Thermosynechococcus vulcanus Photosystem II protein D1
P56152 PSBU_THEVL Thermosynechococcus vulcanus Photosystem II 12 kDa extrinsic protein
Q7DGD4 PSBJ_THEVL Thermosynechococcus vulcanus Photosystem II reaction center protein J
D0VWR7 PSBC_THEVL Thermosynechococcus vulcanus Photosystem II CP43 reaction center protein
D0VWR5 PSBZ_THEVL Thermosynechococcus vulcanus Photosystem II reaction center protein Z
Q7DGD4 PSBJ_THEVL Thermosynechococcus vulcanus Photosystem II reaction center protein J
D0VWR8 PSBD_THEVL Thermosynechococcus vulcanus Photosystem II D2 protein
D0VWR8 PSBD_THEVL Thermosynechococcus vulcanus Photosystem II D2 protein
D0VWR1 PSBB_THEVL Thermosynechococcus vulcanus Photosystem II CP47 reaction center protein
D0VWR2 PSBO_THEVL Thermosynechococcus vulcanus Photosystem II manganese-stabilizing polypeptide
D0VWR2 PSBO_THEVL Thermosynechococcus vulcanus Photosystem II manganese-stabilizing polypeptide
D0VWR7 PSBC_THEVL Thermosynechococcus vulcanus Photosystem II CP43 reaction center protein
P0A387 CY550_THEVL Thermosynechococcus vulcanus Cytochrome c-550
D0VWR1 PSBB_THEVL Thermosynechococcus vulcanus Photosystem II CP47 reaction center protein
P51765 PSBA_THEVL Thermosynechococcus vulcanus Photosystem II protein D1
P0A387 CY550_THEVL Thermosynechococcus vulcanus Cytochrome c-550
D0VWR4 PSBX_THEVL Thermosynechococcus vulcanus Photosystem II reaction center protein X
P19052 PSBH_THEVL Thermosynechococcus vulcanus Photosystem II reaction center protein H
P56152 PSBU_THEVL Thermosynechococcus vulcanus Photosystem II 12 kDa extrinsic protein
D0VWR5 PSBZ_THEVL Thermosynechococcus vulcanus Photosystem II reaction center protein Z
P12238 PSBE_THEVL Thermosynechococcus vulcanus Cytochrome b559 subunit alpha
P19052 PSBH_THEVL Thermosynechococcus vulcanus Photosystem II reaction center protein H
P12238 PSBE_THEVL Thermosynechococcus vulcanus Cytochrome b559 subunit alpha