CATH Domain: 2vimA00 XML data for domain: 2vimA00

Molscript image for 2vimA00
2vimA00
PDB coordinates for domain 2vimA00

PDB 2vim, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.30 Glutaredoxin
3.40.30.10 Glutaredoxin Gene3D
3.40.30.10.17
3.40.30.10.17.1
3.40.30.10.17.1.1
3.40.30.10.17.1.1.1
3.40.30.10.17.1.1.1.1

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Segment boundaries for domain 2vimA00

Chopping figure for domain 2vimA00
DomainStart PDB ResidueStop PDB Residue
2vimA00 1 104

Structural Neighbourhood (43 entries)

There are 43 matching structural neighberhood comparisons for CATH ID 3.40.30.10.17.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 43 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1gh2A00 93.23 CytoplasmHomo sapiensThioredoxin-like protein 1Disulfide oxidoreductase activity 3.40.30.10 107 31 97 0.97 1.00
2e0qA00 92.57 Sulfolobus tokodaii140aa long hypothetical thioredoxinThioredoxin 1 3.40.30.10 104 34 97 1.21 1.25
2pu9C00 92.25 Thioredoxin F-type, chloroplasticSpinacia oleraceaProtein binding 3.40.30.10 111 30 92 0.93 1.00
3gnjA00 90.51 Desulfitobacterium hafniense DCB-2Thioredoxin domain protein 3.40.30.10 107 22 92 1.45 1.57
1w4vA00 90.14 Thioredoxin, mitochondrialHomo sapiensThioredoxin 1 3.40.30.10 110 31 93 1.48 1.58
1thxA00 89.87 Nostoc sp. PCC 7120Thioredoxin-2 3.40.30.10 108 24 94 1.47 1.56
1v98A00 89.82 Thermus thermophilus HB8Thioredoxin 2 [EC:1.8.1.8]Thioredoxin 3.40.30.10 92 35 83 1.49 1.78
2f51A00 89.28 Trichomonas vaginalisThioredoxin 1Thioredoxin 3.40.30.10 101 33 92 1.83 1.98
2b5eA01 87.26 Protein disulfide isomerase activityProtein disulfide oxidoreductase activityProtein bindingProtein foldingEndoplasmic reticulum lumen 3.40.30.10 119 21 84 2.13 2.51
2dizA00 86.52 Anti-apoptosisHomo sapiensThioredoxin domain-containing protein 5 3.40.30.10 117 29 85 2.04 2.39
1a8yA02 85.08 Calsequestrin-1Oryctolagus cuniculus 3.40.30.10 102 12 92 2.53 2.74
1bjxA00 84.98 Cell surfaceProtein disulfide isomerase activityER-Golgi intermediate compartmentProtein bindingPeptidyl-proline hydroxylation to 4-hydroxy-L-proline 3.40.30.10 110 17 86 2.39 2.77
1wouA00 84.67 Thioredoxin domain-containing protein 17Tumor necrosis factor-mediated signaling pathwayProtein bindingCytosolProtein-disulfide reductase activity 3.40.30.10 119 16 83 2.66 3.20
1mekA00 84.60 Cell surfaceER-Golgi intermediate compartmentProtein disulfide isomerase activityProtein bindingPeptidyl-proline hydroxylation to 4-hydroxy-L-proline 3.40.30.10 120 23 82 2.13 2.58
2c0gA01 84.15 Protein targeting to GolgiRegulation of multicellular organism growthProtein homodimerization activityEmbryo development ending in birth or egg hatchingDrosophila melanogaster 3.40.30.10 122 18 81 2.21 2.72
2trcP01 84.04 PhosducinRattus norvegicus 3.40.30.10 131 23 76 2.61 3.42
2av4A00 84.01 SpliceosomeU5 snRNP protein, DIM1 familyPlasmodium yoelii yoeliiDrosophila melanogaster RE13747p 3.40.30.10 135 12 77 1.68 2.18
3gixA00 83.61 Thioredoxin-like protein 4BHomo sapiens 3.40.30.10 133 15 75 1.82 2.42
1a8yA01 83.18 Calsequestrin-1Oryctolagus cuniculus 3.40.30.10 124 11 81 2.71 3.33
2in3A01 81.93 Nitrosomonas europaeaPutative protein-disulfide isomerasePutative uncharacterized protein 3.40.30.10 78 12 70 1.99 2.84
2b5eA04 81.76 Endoplasmic reticulum lumenProtein disulfide oxidoreductase activityProtein disulfide isomerase activityProlyl 4-hydroxylase, beta polypeptide [EC:5.3.4.1]Saccharomyces cerevisiae 3.40.30.10 140 24 71 2.07 2.90
1h75A00 81.33 Glutaredoxin-like protein NrdHGlutaredoxin-like protein nrdHEscherichia coli K-12 3.40.30.10 76 15 70 2.60 3.70
1sjiA03 80.92 Canis lupus familiarisCalsequestrin-2 3.40.30.10 123 12 82 3.01 3.63
2qsiA01 80.90 Putative hydrogenase expression/formation protein hupGHydrogenase-1 operon protein HyaERhodopseudomonas palustris 3.40.30.10 82 17 75 2.20 2.90
2kucA00 79.71 Bacteroides thetaiotaomicronPutative disulphide-isomerase 3.40.30.10 121 27 81 2.71 3.31
1xg8A00 79.29 Staphylococcus aureus subsp. aureus N315Putative uncharacterized protein SA0798 3.40.30.30 108 10 79 3.88 4.87
1ttzA00 79.15 Xanthomonas campestris pv. campestrisPutative uncharacterized protein 3.40.30.10 74 10 70 2.87 4.09
1k0mA01 78.28 Membrane fractionChloride intracellular channel protein 1Soluble fractionChloride transportSignal transduction 3.40.30.10 92 13 71 3.54 4.98
2c3nA01 78.22 Soluble fractionGlutathione S-transferase theta-1Glutathione metabolic processGlutathione transferase activityGlutathione metabolism 3.40.30.10 79 12 68 3.32 4.86
2okaA00 77.96 Pseudomonas aeruginosaSelenoprotein W-related proteinPutative uncharacterized protein 3.40.30.10 84 7 68 2.47 3.62
1nhyA01 77.88 Positive regulation of transcription from RNA polymerase II promoterCalcium ion bindingNucleusElongation factor 1-gamma 1Transcription coactivator activity 3.40.30.10 76 15 68 2.96 4.34
1g7eA00 77.56 Rattus norvegicusEndoplasmic reticulum lumenEndoplasmic reticulum protein 29Transport vesicleEndoplasmic reticulum resident protein 29 3.40.30.10 122 19 81 3.29 4.01
2p0gB00 77.36 Vibrio choleraeSelenoprotein W-related proteinSelenoprotein W-related protein 3.40.30.10 79 8 67 2.60 3.86
2fa8B00 77.24 Agrobacterium tumefaciens str. C58Selenoprotein W-related proteinPutative uncharacterized protein 3.40.30.10 86 4 67 3.16 4.69
1egoA00 77.04 Glutaredoxin 1Glutaredoxin-1Protein bindingEscherichia coli K-12 3.40.30.10 85 12 74 3.38 4.57
3dexH00 76.84 Streptomyces avermitilisSelenoprotein W-related proteinPutative uncharacterized protein 3.40.30.10 83 8 69 3.13 4.52
1nm3A02 76.69 Peroxiredoxin (alkyl hydroperoxide reductase subunit C) [EC:1.11.1.15]Haemophilus influenzaeHybrid peroxiredoxin hyPrx5 3.40.30.10 70 11 64 2.81 4.36
1t1vA00 76.67 Mus musculusSH3 domain-binding glutamic acid-rich-like protein 3 3.40.30.10 93 6 73 2.92 4.00
3f9uA00 76.30 Bacteroides fragilis NCTC 9343Putative exported cytochrome C biogenesis-related protein 3.40.30.10 139 12 71 3.14 4.41
1abaA00 76.05 Enterobacteria phage T4Glutaredoxin 3.40.30.10 87 16 66 3.01 4.54
1iloA00 74.53 Methanothermobacter thermautotrophicus str. Delta HConserved protein 3.40.30.10 77 10 69 2.97 4.29
1fo5A00 74.29 Methanocaldococcus jannaschiiThioredoxin 3.40.30.10 85 20 76 3.20 4.16
1u6tA00 72.59 CytoplasmSH3 domain-binding glutamic acid-rich-like proteinNucleusHomo sapiensSH3/SH2 adaptor activity 3.40.30.10 120 9 63 2.67 4.22
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Displaying entries 1 to 43 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|2vimA00
MRVLATAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIPEVEFAKVDVDQNEEAAAKYSVTAMPTFVFIK
DGKEVDRFSGANETKLRETITRHK
BLAST against CATH

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Domain COMBS Sequence 

>pdb|2vimA00
MRVLATAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIPEVEFAKVDVDQNEEAAAKYSVTAMPTFVFIK
DGKEVDRFSGANETKLRETITRHK
BLAST against CATH

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Domain History Events (6)

Domain assigned by auto on 27 Apr 2009 23:28

Assigning to "3.40.30.10" based on similarity with "1wmjA01"

Flow stage update by auto on 27 Apr 2009 23:08

No in_process hits for Domain "2vimA00" ready to be processed

Flow stage update by auto on 27 Apr 2009 23:08

NW result present for Domain "2vimA00"

Flow stage update by auto on 25 Apr 2009 08:08

All required files are present for Domain "2vimA00"

Flow stage update by auto on 24 Apr 2009 02:31

Beginning processing for Domain "2vimA00"

Insertion by auto on 23 Apr 2009 21:35

Final ChopClose added based on similarity with "1ti3A"