CATH Domain: 2bfdB02 XML data for domain: 2bfdB02

Molscript image for 2bfdB02
2bfdB02
PDB coordinates for domain 2bfdB02

PDB 2bfd, Chain B, Domain 2

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.920 Gene3D
3.40.50.920.2
3.40.50.920.2.1
3.40.50.920.2.1.1
3.40.50.920.2.1.1.1
3.40.50.920.2.1.1.1.1

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Segment boundaries for domain 2bfdB02

Chopping figure for domain 2bfdB02
DomainStart PDB ResidueStop PDB Residue
2bfdB01 17 213
2bfdB02 214 338

Structural Neighbourhood (9 entries)

There are 9 matching structural neighberhood comparisons for CATH ID 3.40.50.920.2.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 9 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2ozlB02 92.84 Pyruvate dehydrogenase (acetyl-transferring) activityPyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]Citrate cycle (TCA cycle)Pyruvate dehydrogenase E1 component subunit beta, mitochondrialTricarboxylic acid cycle 3.40.50.920 134 34 92 0.80 0.86
3l84A03 84.34 TransketolasePentose phosphate pathwayCampylobacter jejuniTransketolase [EC:2.2.1.1]Metabolic pathways 3.40.50.920 116 12 83 2.17 2.61
1l8aA03 79.67 Citrate cycle (TCA cycle)Pyruvate metabolismValine, leucine and isoleucine biosynthesisMetabolic pathwaysButanoate metabolism 3.40.50.920 181 13 62 2.53 4.02
2pjuC01 79.40 Positive regulation of gene-specific transcriptionPropionate catabolism operon regulatory proteinNegative regulation of gene-specific transcriptionEscherichia coli K-12Specific transcriptional repressor activity 3.40.50.2300 100 10 70 2.72 3.86
2qr3A00 78.52 Bacteroides fragilisTwo-component system response regulator 3.40.50.2300 119 8 76 3.83 4.99
2q5cA01 76.47 Clostridium acetobutylicumNtrC family transcriptional regulator (PAS and AAA domains) 3.40.50.2300 97 7 69 2.72 3.91
2c42A02 76.22 Pyruvate-ferredoxin oxidoreductaseDesulfovibrio africanus 3.40.50.920 157 9 72 3.12 4.30
1jflA01 75.55 Aspartate racemase [EC:5.1.1.13]228aa long hypothetical aspartate racemasePyrococcus horikoshiiAlanine, aspartate and glutamate metabolism 3.40.50.1860 119 7 73 3.39 4.61
3ctpA01 75.01 Alkaliphilus metalliredigens QYMFPeriplasmic binding protein/LacI transcriptional regulator 3.40.50.2300 128 7 75 3.57 4.76
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Displaying entries 1 to 9 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|2bfdB02
EVIQEGSDVTLVAWGTQVHVIREVASMAKEKLGVSCEVIDLRTIIPWDVDTICKSVIKTGRLLISHEAPLTGGFASEISS
TVQEECFLNLEAPISRVCGYDTPFPHIFEPFYIPDKWKCYDALRK
BLAST against CATH

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Domain COMBS Sequence 

>pdb|2bfdB02
EVIQEGSDVTLVAWGTQVHVIREVASMAKEKLGVSCEVIDLRTIIPWDVDTICKSVIKTGRLLISHEAPLTGGFASEISS
TVQEECFLNLEAPISRVCGYDTPFPHIFEPFYIPDKWKCYDALRK
BLAST against CATH

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Domain History Events (5)

Domain assigned by auto on 28 Apr 2006 20:29

Assigning to "3.40.50.920" based on similarity with "1wciB02" (NWSI: 100, NWO: 100, SPS: 99.44, SPO: 100, RMSD: 0.12)

Flow stage update by auto on 28 Apr 2006 17:50

NW result present for Domain "2bfdB02"

Flow stage update by auto on 28 Apr 2006 17:47

All required files are present for Domain "2bfdB02"

Flow stage update by auto on 27 Apr 2006 17:32

Beginning processing for Domain "2bfdB02"

Insertion by auto on 17 Mar 2006 18:31

Final ChopClose added based on similarity with "1olsB" [LEE: 0, LME: 0, MR: 0, LG: 4, SS: 98.29, SI: 100, SO: 100]