CATH Domain: 1v54B02 XML data for domain: 1v54B02

Molscript image for 1v54B02
1v54B02
PDB coordinates for domain 1v54B02

PDB 1v54, Chain B, Domain 2

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.60 Sandwich
2.60.40 Immunoglobulin-like
2.60.40.420 Cupredoxins - blue copper proteins Gene3D
2.60.40.420.16
2.60.40.420.16.1
2.60.40.420.16.1.1
2.60.40.420.16.1.1.1
2.60.40.420.16.1.1.1.1

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Segment boundaries for domain 1v54B02

Chopping figure for domain 1v54B02
DomainStart PDB ResidueStop PDB Residue
1v54B01 2 91
1v54B02 92 227

Structural Neighbourhood (7 entries)

There are 7 matching structural neighberhood comparisons for CATH ID 2.60.40.420.16.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 7 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2gsmB02 91.59 Rhodobacter sphaeroidesOxidative phosphorylationCytochrome c oxidase subunit 2Cytochrome c oxidase subunit II [EC:1.9.3.1]Metabolic pathways 2.60.40.420 153 43 88 1.12 1.27
1cyxA00 85.77 Oxidative phosphorylationMetabolic pathwaysIntegral to plasma membraneOxidoreduction-driven active transmembrane transporter activityEscherichia coli K-12 2.60.40.420 158 22 72 1.22 1.69
1fwxA02 81.05 Paracoccus denitrificansNitrous-oxide reductase 2.60.40.420 121 13 68 2.10 3.07
1ibyA00 78.84 Chain A, Red Copper Protein NitrosocyaninNitrosomonas europaea 2.60.40.420 112 8 65 2.60 3.97
1sddB02 78.52 Coagulation factor VBos taurusCoagulation factor V (labile factor)Complement and coagulation cascades 2.60.40.420 125 8 70 2.62 3.71
3cvbA00 75.31 PlastocyaninPhormidium laminosum 2.60.40.420 102 10 61 2.87 4.70
1kdjA00 74.99 Identical protein bindingPlastocyaninDryopteris crassirhizoma 2.60.40.420 102 9 59 2.71 4.55
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Displaying entries 1 to 7 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1v54B02
NPSLTVKTMGHQWYWSYEYTDYEDLSFDSYMIPTSELKPGELRLLEVDNRVVLPMEMTIRMLVSSEDVLHSWAVPSLGLK
TDAIPGRLNQTTLMSSRPGLYYGQCSEICGSNHSFMPIVLELVPLKYFEKWSASML
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1v54B02
NPSLTVKTMGHQWYWSYEYTDYEDLSFDSYMIPTSELKPGELRLLEVDNRVVLPMEMTIRMLVSSEDVLHSWAVPSLGLK
TDAIPGRLNQTTLMSSRPGLYYGQCSEICGSNHSFMPIVLELVPLKYFEKWSASML
BLAST against CATH

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Domain History Events (5)

Domain assigned by auto on 28 Apr 2006 18:42

Assigning to "2.60.40.420" based on similarity with "1oczO02" (NWSI: 100, NWO: 100, SPS: 97.39, SPO: 100, RMSD: 0.29)

Flow stage update by auto on 28 Apr 2006 17:50

NW result present for Domain "1v54B02"

Flow stage update by auto on 28 Apr 2006 17:44

All required files are present for Domain "1v54B02"

Flow stage update by auto on 27 Apr 2006 17:31

Beginning processing for Domain "1v54B02"

Insertion by auto on 09 Mar 2006 01:22

Final ChopClose added based on similarity with "1occB" [LEE: 0, LME: 0, MR: 1, LG: 1, SS: 96.53, SI: 99.5594713656388, SO: 100]