CATH Domain: 1ubdC01 XML data for domain: 1ubdC01

Molscript image for 1ubdC01
1ubdC01
PDB coordinates for domain 1ubdC01

PDB 1ubd, Chain C, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.30 2-Layer Sandwich
3.30.160 Double Stranded RNA Binding Domain
3.30.160.60 Classic Zinc Finger Gene3D
3.30.160.60.11
3.30.160.60.11.1
3.30.160.60.11.1.1
3.30.160.60.11.1.1.1
3.30.160.60.11.1.1.1.1

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Segment boundaries for domain 1ubdC01

Chopping figure for domain 1ubdC01
DomainStart PDB ResidueStop PDB Residue
1ubdC01 295 322
1ubdC02 323 349
1ubdC03 350 379
1ubdC04 380 408

Structural Neighbourhood (22 entries)

There are 22 matching structural neighberhood comparisons for CATH ID 3.30.160.60.11.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 22 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1tf6A02 90.71 Xenopus laevisTranscription factor IIIA 3.30.160.60 29 28 93 1.01 1.08
1tf6A04 90.69 Xenopus laevisTranscription factor IIIA 3.30.160.60 30 21 93 1.17 1.25
1tf3A01 90.42 Xenopus laevisTranscription factor IIIA 3.30.160.60 30 21 93 1.32 1.41
1ubdC02 90.41 Zinc ion bindingTranscription coactivator activityTranscriptional repressor protein YY1Transcription factor YYSequence-specific DNA binding transcription factor activity 3.30.160.60 27 25 92 0.84 0.90
1x5wA01 90.15 Homo sapiensZinc finger protein 64 homolog, isoforms 1 and 2 3.30.160.60 28 21 92 1.00 1.08
2drpA02 89.72 Brain morphogenesisChromatin bindingDorsal appendage formationDrosophila melanogasterPeripheral nervous system development 3.30.160.60 29 25 89 1.33 1.48
1tf6D01 88.62 Xenopus laevisTranscription factor IIIA 3.30.160.60 33 21 84 0.92 1.08
2adrA01 88.61 NucleusRegulation of carbohydrate metabolic processPeroxisome organizationNegative regulation of transcription from RNA polymerase II promoter by glucoseRegulatory protein ADR1 3.30.160.60 29 21 89 1.17 1.30
1un6D02 88.05 Xenopus laevisTranscription factor IIIA 3.30.160.60 31 17 90 1.19 1.32
1tf6A03 87.05 Xenopus laevisTranscription factor IIIA 3.30.160.60 34 28 82 1.09 1.32
1bboA02 84.96 DNA bindingZinc finger protein 40NucleusHomo sapiensHuman immunodeficiency virus type I enhancer-binding protein 3.30.160.60 31 17 83 2.12 2.53
1kyqA02 83.41 Identical protein bindingPrecorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:1.3.1.76 4.99.1.4]Siroheme biosynthetic processMetabolic pathwaysPrecorrin-2 dehydrogenase activity 3.30.160.110 37 0 75 1.54 2.04
1pjqA02 82.43 Porphyrin and chlorophyll metabolismSalmonella enterica subsp. enterica serovar TyphimuriumSiroheme synthaseUroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4]Metabolic pathways 3.30.160.110 35 3 77 1.81 2.35
3bidA01 78.00 Neisseria meningitidis serogroup BUPF0339 protein NMB1088 3.30.160.160 46 0 60 1.80 2.96
3c6mC01 77.50 Spermine synthaseArginine and proline metabolismSpermine synthase [EC:2.5.1.22]Glutathione metabolismMetabolic pathways 3.30.160.110 44 7 63 2.81 4.42
1ncsA00 77.30 Regulation of transcription involved in G1 phase of mitotic cell cycleNucleusProtein bindingTranscriptional factor SWI5Cytoplasm 3.30.160.60 47 39 59 1.50 2.52
1bbgA00 76.91 Pollen allergen Amb t 5Ambrosia trifida 3.30.160.80 40 7 60 1.55 2.58
1llmD02 76.12 Early growth response protein 1Prion diseasesPositive regulation of RNA polymerase II transcriptional preinitiation complex assemblyResponse to insulin stimulusNegative regulation of transcription from RNA polymerase II promoter 3.30.160.60 55 21 47 1.03 2.18
1yuiA00 74.68 Drosophila melanogasterPositive regulation of transcription, DNA-dependentTranscription factor GAGACentromeric heterochromatinProtein heterodimerization activity 3.30.160.60 54 25 48 1.66 3.45
1zmeC01 71.35 Positive regulation of transcription from RNA polymerase II promoterProline utilization trans-activatorProline catabolic processProtein bindingSpecific RNA polymerase II transcription factor activity 4.10.240.10 31 10 90 3.94 4.36
1b69A00 69.82 Transposase from transposon Tn916Enterococcus faecalis 3.30.160.60 69 3 40 1.81 4.46
2yw2A02 68.90 Phosphoribosylamine--glycine ligase [EC:6.3.4.13]Purine metabolismPhosphoribosylamine--glycine ligaseMetabolic pathwaysAquifex aeolicus 3.30.1490.20 70 10 40 1.85 4.62
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Displaying entries 1 to 22 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1ubdC01
TIACPHKGCTKMFRDNSAMRKHLHTHGP
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1ubdC01
MEPRTIACPHKGCTKMFRDNSAMRKHLHTHGP
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:01

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:01

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:47

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"