CATH Domain: 1ryiA02 XML data for domain: 1ryiA02

Molscript image for 1ryiA02
1ryiA02
PDB coordinates for domain 1ryiA02

PDB 1ryi, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.30 2-Layer Sandwich
3.30.9 D-Amino Acid Oxidase; Chain A, domain 2
3.30.9.10 D-Amino Acid Oxidase, subunit A, domain 2 Gene3D
3.30.9.10.6
3.30.9.10.6.1
3.30.9.10.6.1.1
3.30.9.10.6.1.1.1
3.30.9.10.6.1.1.1.1

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Segment boundaries for domain 1ryiA02

Chopping figure for domain 1ryiA02
DomainStart PDB ResidueStop PDB Residue
1ryiA01 1 91
1ryiA01 145 218
1ryiA01 306 364
1ryiA02 92 144
1ryiA02 219 305

Structural Neighbourhood (3 entries)

There are 3 matching structural neighberhood comparisons for CATH ID 3.30.9.10.6.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 3 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
3g3eA02 84.94 PeroxisomeArginine and proline metabolismD-amino-acid oxidase [EC:1.4.3.3]Glycine, serine and threonine metabolismD-amino-acid oxidase activity 3.30.9.10 141 15 87 3.60 4.09
2uzzA02 76.05 N-methyl-L-tryptophan oxidase [EC:1.5.3.-]N-methyl-L-tryptophan oxidaseEscherichia coli K-12N-methyl-L-amino-acid oxidase activity 3.30.9.10 191 12 72 2.70 3.74
3c4nA02 73.38 Deinococcus radioduransPutative uncharacterized protein 3.30.9.10 124 10 74 3.60 4.85
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Displaying entries 1 to 3 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1ryiA02
NGGMFKLAFSEEDVLQLRQMDDLDSVSWYSKEEVLEKEPYASGDIFGASFIQDFLPVKGECLSVWNDDIPLTKTLYHDHC
YIVPRKSGRLVVGATMKPGDWSETPDLGGLESVMKKAKTMLPAIQNMKVDRFWAGLRPGT
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1ryiA02
NGGMFKLAFSEEDVLQLRQMDDLDSVSWYSKEEVLEKEPYASGDIFGASFIQDFLPVKGECLSVWNDDIPLTKTLYHDHC
YIVPRKSGRLVVGATMKPGDWSETPDLGGLESVMKKAKTMLPAIQNMKVDRFWAGLRPGT
BLAST against CATH

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Domain History Events (5)

Domain assigned by auto on 28 Apr 2006 18:47

Assigning to "3.30.9.10" based on similarity with "1ng3B02" (NWSI: 99.2857142857143, NWO: 100, SPS: 97.28, SPO: 100, RMSD: 0.44)

Flow stage update by auto on 28 Apr 2006 17:50

NW result present for Domain "1ryiA02"

Flow stage update by auto on 28 Apr 2006 17:44

All required files are present for Domain "1ryiA02"

Flow stage update by auto on 27 Apr 2006 17:31

Beginning processing for Domain "1ryiA02"

Insertion by auto on 09 Mar 2006 02:18

Final ChopClose added based on similarity with "1ng3A" [LEE: 0, LME: 0, MR: 0, LG: 0, SS: 96.46, SI: 97.1204188481675, SO: 97.9487179487179]