CATH Domain: 1ryiA01 XML data for domain: 1ryiA01

Molscript image for 1ryiA01
1ryiA01
PDB coordinates for domain 1ryiA01

PDB 1ryi, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.50 3-Layer(bba) Sandwich
3.50.50 FAD/NAD(P)-binding domain
3.50.50.60 Gene3D
3.50.50.60.14
3.50.50.60.14.1
3.50.50.60.14.1.1
3.50.50.60.14.1.1.1
3.50.50.60.14.1.1.1.1

[top]
Segment boundaries for domain 1ryiA01

Chopping figure for domain 1ryiA01
DomainStart PDB ResidueStop PDB Residue
1ryiA01 1 91
1ryiA01 145 218
1ryiA01 306 364
1ryiA02 92 144
1ryiA02 219 305

Structural Neighbourhood (5 entries)

There are 5 matching structural neighberhood comparisons for CATH ID 3.50.50.60.14.1.1.1.1 (SIMAX score < 5)

[1]
Displaying entries 1 to 5 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1pj5A01 85.79 N,N-dimethylglycine oxidaseArthrobacter globiformis 3.50.50.60 240 18 86 2.44 2.82
3c4nA01 84.37 Deinococcus radioduransPutative uncharacterized protein 3.50.50.60 233 15 82 2.46 2.97
2gqfA01 80.75 Haemophilus influenzaeUncharacterized protein HI_0933 3.50.50.60 244 16 82 3.43 4.14
2i0zA01 79.81 NAD(FAD)-utilizing dehydrogenasesBacillus cereus ATCC 14579 3.50.50.60 260 18 78 3.71 4.75
1k0iA01 79.44 Pseudomonas aeruginosaP-hydroxybenzoate hydroxylaseP-hydroxybenzoate 3-monooxygenase [EC:1.14.13.2]2,4-Dichlorobenzoate degradationBenzoate degradation via hydroxylation 3.50.50.60 240 13 82 4.05 4.93
[1]
Displaying entries 1 to 5 (page 1 of 1)


[top]
Domain ATOM Sequence 

>pdb|1ryiA01
MKRHYEAVVIGGGIIGSAIAYYLAKENKNTALFESGTMGGRTTSAAAGMLGAHAECEERDAFFDFAMHSQRLYKGLGEEL
YALSGVDIRQHDVHVEPYFVCKAYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSGDVWANHVVVASGVWSGMFFKQL
GLNNAKDGKPYIGRHPEDSRILFAAGHFRNGILLAPATGALISDLIMNKEVNQDWLHAFRIDRK
BLAST against CATH

[top]
Domain COMBS Sequence 

>pdb|1ryiA01
MHHHHHHMARIRAMKRHYEAVVIGGGIIGSAIAYYLAKENKNTALFESGTMGGRTTSAAAGMLGAHAECEERDAFFDFAM
HSQRLYKGLGEELYALSGVDIRQHDVHVEPYFVCKAYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSGDVWANHVVV
ASGVWSGMFFKQLGLNNAKDGKPYIGRHPEDSRILFAAGHFRNGILLAPATGALISDLIMNKEVNQDWLHAFRIDRKEAV
NI
BLAST against CATH

[top]
Domain History Events (5)

Domain assigned by auto on 28 Apr 2006 18:47

Assigning to "3.50.50.60" based on similarity with "1ng4A01" (NWSI: 99.5633187772926, NWO: 94.6280991735537, SPS: 97.68, SPO: 100, RMSD: 0.30)

Flow stage update by auto on 28 Apr 2006 17:50

NW result present for Domain "1ryiA01"

Flow stage update by auto on 28 Apr 2006 17:44

All required files are present for Domain "1ryiA01"

Flow stage update by auto on 27 Apr 2006 17:31

Beginning processing for Domain "1ryiA01"

Insertion by auto on 09 Mar 2006 02:18

Final ChopClose added based on similarity with "1ng3A" [LEE: 0, LME: 0, MR: 0, LG: 0, SS: 96.46, SI: 97.1204188481675, SO: 97.9487179487179]