CATH Domain: 1octC01 XML data for domain: 1octC01

Molscript image for 1octC01
1octC01
PDB coordinates for domain 1octC01

PDB 1oct, Chain C, Domain 1

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.260 434 Repressor (Amino-terminal Domain)
1.10.260.40 lambda repressor-like DNA-binding domains Gene3D
1.10.260.40.8
1.10.260.40.8.1
1.10.260.40.8.1.1
1.10.260.40.8.1.1.2
1.10.260.40.8.1.1.2.1

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Segment boundaries for domain 1octC01

Chopping figure for domain 1octC01
DomainStart PDB ResidueStop PDB Residue
1octC01 5 75
1octC02 102 161

Structural Neighbourhood (15 entries)

There are 15 matching structural neighberhood comparisons for CATH ID 1.10.260.40.8.1.1.2.1 (SIMAX score < 5)

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Displaying entries 1 to 15 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1r69A00 85.87 Repressor protein CIPhage 434 1.10.260.40 63 20 77 2.91 3.76
1utxA00 83.90 CylR2Enterococcus faecalis 1.10.260.40 66 15 76 2.02 2.66
1y9qA01 83.58 Vibrio choleraeTranscriptional regulator, HTH_3 family 1.10.260.40 83 14 67 2.15 3.19
3b7hA00 82.95 Prophage Lp1 protein 11Lactobacillus plantarum 1.10.260.40 76 9 84 3.77 4.48
2ppxA00 81.83 Agrobacterium tumefaciens str. C58Putative uncharacterized protein 1.10.260.40 58 13 70 2.36 3.35
1ic8A01 80.86 Promoter bindingProtein homodimerization activityNucleusPositive regulation of transcription, DNA-dependentGlucose homeostasis 1.10.260.40 94 15 67 2.52 3.76
1lq7A00 80.44 1.20.1270.70 67 13 83 3.82 4.60
2auwB02 80.38 Nitrosomonas europaeaPutative uncharacterized protein 1.10.260.40 67 10 78 3.14 3.98
1rzsA00 79.82 Enterobacteria phage P22Regulatory protein cro 1.10.260.40 61 18 70 3.07 4.36
1dw9A01 79.12 Nitrogen metabolismCyanate lyase [EC:4.2.1.104]Cyanate hydrataseCytoplasmCyanate hydratase activity 1.10.260.40 86 4 68 2.72 3.96
1jftA01 77.83 LacI family transcriptional regulator, purine nucleotide synthesis repressorHTH-type transcriptional repressor purREscherichia coli K-12 1.10.260.40 57 12 59 2.18 3.69
2o38A01 77.02 Rhodopseudomonas palustrisPutative uncharacterized protein 1.10.260.40 64 9 76 2.89 3.80
1b0nA00 76.82 Bacillus subtilisHTH-type transcriptional regulator sinR 1.10.260.40 103 9 52 1.95 3.72
1s7eA01 76.59 One cut domain, family member 1, hepatocyte nuclear factor 6Endoderm developmentPositive regulation of gene-specific transcription from RNA polymerase II promoterRegulation of cell-matrix adhesionEndocrine pancreas development 1.10.260.40 73 9 84 4.00 4.71
3bs3A00 75.80 Bacteroides fragilis NCTC 9343Putative DNA-binding protein 1.10.260.40 49 8 61 2.93 4.73
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Displaying entries 1 to 15 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1octC01
DLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLEKWLNDAE
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1octC01
DLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLEKWLNDAE
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:07

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:07

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:26

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"