CATH Domain: 1oaiA00 XML data for domain: 1oaiA00

Molscript image for 1oaiA00
1oaiA00
PDB coordinates for domain 1oaiA00

PDB 1oai, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.8 Helicase, Ruva Protein; domain 3
1.10.8.10 DNA helicase RuvA subunit, C-terminal domain Gene3D
1.10.8.10.1
1.10.8.10.1.1
1.10.8.10.1.1.1
1.10.8.10.1.1.1.1
1.10.8.10.1.1.1.1.1

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Segment boundaries for domain 1oaiA00

Chopping figure for domain 1oaiA00
DomainStart PDB ResidueStop PDB Residue
1oaiA00 561 619

Structural Neighbourhood (21 entries)

There are 21 matching structural neighberhood comparisons for CATH ID 1.10.8.10.1.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 21 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1a5tA02 85.81 Pyrimidine metabolismDNA replicationPurine metabolismMetabolic pathwaysHomologous recombination 1.10.8.10 40 12 67 1.14 1.68
1v92A00 85.55 Rattus norvegicusGolgi organizationCellular membrane fusionNSFL1 cofactor p47Protein binding 1.10.8.10 46 19 77 1.98 2.54
1otrA00 85.54 Saccharomyces cerevisiaeProtein bindingUbiquitin-binding protein CUE2 1.10.8.10 49 12 81 2.28 2.80
1dv0A00 85.42 Nucleotide excision repairNucleotide-excision repairUV excision repair protein RAD23 homolog ASingle-stranded DNA bindingHomo sapiens 1.10.8.10 45 8 76 2.30 3.02
3b7nA01 85.03 CRAL-TRIO domain-containing protein YKL091CNucleusSaccharomyces cerevisiae 1.10.8.20 79 18 67 2.60 3.88
3frhA01 84.32 16S rRNA methylaseEscherichia coli 1.10.8.10 58 3 81 3.33 4.09
2h5xA03 83.34 Homologous recombinationHolliday junction ATP-dependent DNA helicase ruvAHolliday junction DNA helicase RuvAMycobacterium tuberculosis 1.10.8.10 50 4 69 1.96 2.82
2ztdA03 83.26 Homologous recombinationHolliday junction ATP-dependent DNA helicase ruvAHolliday junction DNA helicase RuvAMycobacterium tuberculosis 1.10.8.10 50 4 69 1.84 2.65
2chgA02 82.73 Archaeoglobus fulgidusReplication factor C small subunitReplication factor C small subunit 1.10.8.60 66 10 78 3.89 4.94
3bg3B04 81.81 Pyruvate carboxylase subunit A [EC:6.4.1.1]Citrate cycle (TCA cycle)Biotin bindingPyruvate metabolismPyruvate carboxylase, mitochondrial 1.10.10.60 44 9 74 2.19 2.94
1bvsF03 81.11 Homologous recombinationHolliday junction ATP-dependent DNA helicase ruvAMycobacterium lepraeHolliday junction DNA helicase RuvA 1.10.8.10 45 4 66 1.90 2.87
1njgA02 81.01 Pyrimidine metabolismDNA replicationPurine metabolismMetabolic pathwaysHomologous recombination 1.10.8.60 66 5 80 3.69 4.60
1jr3D03 80.19 Pyrimidine metabolismDNA replicationPurine metabolismMetabolic pathwaysHomologous recombination 1.10.8.60 71 11 73 3.03 4.14
1wivA00 79.80 Embryo development ending in seed dormancyUbiquitin carboxyl-terminal hydrolase 5/13 [EC:3.1.2.15]Ubiquitin carboxyl-terminal hydrolase 14Arabidopsis thalianaUbiquitin-specific protease activity 1.10.8.10 73 10 69 3.39 4.85
2fmpA02 79.58 DNA-dependent DNA replicationDNA-directed DNA polymerase activityDNA polymerase betaCytoplasmBase excision repair 1.10.150.20 57 5 81 3.88 4.77
3bg5B07 79.24 Citrate cycle (TCA cycle)Pyruvate metabolismMetabolic pathwaysPyruvate carboxylase subunit A [EC:6.4.1.1]Pyruvate carboxylase subunit B [EC:6.4.1.1] 1.10.10.60 46 6 76 2.43 3.19
1nvmA02 78.61 Pseudomonas sp. CF6004-hydroxy-2-oxovalerate aldolase 1.10.8.60 64 5 79 3.21 4.03
1cukA03 78.38 Homologous recombinationHolliday junction ATP-dependent DNA helicase ruvAHolliday junction DNA helicase RuvAEscherichia coli K-12 1.10.8.10 48 6 69 2.73 3.93
1i2tA00 75.87 Progesterone receptor signaling pathwayE3 ubiquitin-protein ligase EDD1 [EC:6.3.2.19]NucleusSoluble fractionUbiquitin mediated proteolysis 1.10.1900.10 61 8 80 3.48 4.33
2qq8A02 74.90 Homo sapiensTBC1 domain family member 14 1.10.8.270 94 10 48 2.37 4.84
1lv7A02 74.76 Zinc ion bindingATPase activityIntegral to membraneManganese ion bindingProtein binding 1.10.8.60 75 6 44 1.66 3.77
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Displaying entries 1 to 21 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1oaiA00
PTLSPEQQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQAFTHLKAKGEIPEVAFMK
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1oaiA00
PTLSPEQQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQAFTHLKAKGEIPEVAFMK
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:02

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:02

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 14:23

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"