CATH Domain: 1o7jA02 XML data for domain: 1o7jA02

Molscript image for 1o7jA02
1o7jA02
PDB coordinates for domain 1o7jA02

PDB 1o7j, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.40 Gene3D
3.40.50.40.1
3.40.50.40.1.1
3.40.50.40.1.1.1
3.40.50.40.1.1.1.1
3.40.50.40.1.1.1.1.1

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Segment boundaries for domain 1o7jA02

Chopping figure for domain 1o7jA02
DomainStart PDB ResidueStop PDB Residue
1o7jA01 3 218
1o7jA02 219 327

Structural Neighbourhood (6 entries)

There are 6 matching structural neighberhood comparisons for CATH ID 3.40.50.40.1.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 6 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2wltA02 93.73 L-asparaginase [EC:3.5.1.1]Nitrogen metabolismCyanoamino acid metabolismProbable L-asparaginaseAlanine, aspartate and glutamate metabolism 3.40.50.40 112 42 96 1.40 1.45
2driA01 78.47 Bacterial chemotaxisABC transportersD-ribose-binding periplasmic proteinRibose transport system substrate-binding proteinMembrane 3.40.50.2300 125 8 72 3.14 4.36
2h3hA01 77.64 Thermotoga maritimaSugar ABC transporter, periplasmic sugar-binding proteinSimple sugar transport system substrate-binding protein 3.40.50.2300 148 13 64 3.18 4.90
1y7pB02 77.02 Archaeoglobus fulgidusUncharacterized protein AF_1403 3.40.50.10550 137 14 67 3.30 4.91
3brsA01 76.63 Ribose transport system substrate-binding proteinBacterial chemotaxisPeriplasmic binding protein/LacI transcriptional regulatorClostridium phytofermentans ISDgABC transporters 3.40.50.2300 136 7 68 3.23 4.72
3d8uB01 74.73 Putative transcriptional regulatorVibrio parahaemolyticusLacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor 3.40.50.2300 119 11 72 3.47 4.80
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Displaying entries 1 to 6 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1o7jA02
KVDILYGYQDDPEYLYDAAIQHGVKGIVYAGMGAGSVSVRGIAGMRKALEKGVVVMRSTRTGNGIVPPDEELPGLVSDSL
NPAHARILLMLALTRTSDPKVIQEYFHTY
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1o7jA02
KVDILYGYQDDPEYLYDAAIQHGVKGIVYAGMGAGSVSVRGIAGMRKALEKGVVVMRSTRTGNGIVPPDEELPGLVSDSL
NPAHARILLMLALTRTSDPKVIQEYFHTY
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:12

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:12

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:25

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"