CATH Domain: 1o7iB00 XML data for domain: 1o7iB00

Molscript image for 1o7iB00
1o7iB00
PDB coordinates for domain 1o7iB00

PDB 1o7i, Chain B, Domain 0

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.40 Beta Barrel
2.40.50 OB fold (Dihydrolipoamide Acetyltransferase, E2P)
2.40.50.140 Nucleic acid-binding proteins Gene3D
2.40.50.140.1
2.40.50.140.1.1
2.40.50.140.1.1.1
2.40.50.140.1.1.1.1
2.40.50.140.1.1.1.1.1

[top]
Segment boundaries for domain 1o7iB00

Chopping figure for domain 1o7iB00
DomainStart PDB ResidueStop PDB Residue
1o7iB00 1 114

Structural Neighbourhood (21 entries)

There are 21 matching structural neighberhood comparisons for CATH ID 2.40.50.140.1.1.1.1.1 (SIMAX score < 5)

[1]
Displaying entries 1 to 21 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1jmcA02 85.50 Replication factor A1DNA-dependent DNA replicationNucleotide excision repairDNA replicationPML body 2.40.50.140 124 17 86 2.22 2.57
1miuA03 84.99 HemopoiesisInner cell mass cell proliferationResponse to X-rayPositive regulation of mitotic cell cycleDNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator 2.40.50.140 117 14 88 3.19 3.62
1ltlA02 84.72 Methanothermobacter thermautotrophicus str. Delta HDNA replication initiator (Cdc21/Cdc54)Replicative DNA helicase Mcm [EC:3.6.1.-] 2.40.50.140 100 9 72 1.54 2.12
1fguB01 84.43 Replication factor A1DNA-dependent DNA replicationDNA replicationNucleotide excision repairReplication protein A 70 kDa DNA-binding subunit 2.40.50.140 105 13 82 2.23 2.70
2oq0C01 84.40 Gamma-interferon-inducible protein 16NucleolusMonocyte differentiationDouble-stranded DNA bindingProtein binding 2.40.50.140 101 12 85 3.13 3.68
2oq0B02 82.91 Gamma-interferon-inducible protein 16NucleolusMonocyte differentiationDouble-stranded DNA bindingProtein binding 2.40.50.140 86 12 72 1.83 2.51
1n9wA01 82.73 Aminoacyl-tRNA biosynthesisNondiscriminating aspartyl-tRNA synthetase [EC:6.1.1.23]Aspartyl-tRNA synthetase 2Thermus thermophilus 2.40.50.140 92 14 76 3.72 4.87
1jb7A02 82.48 Telomere-binding protein subunit alphaSterkiella nova 2.40.50.140 116 12 90 3.87 4.28
1x54A01 82.36 Aminoacyl-tRNA biosynthesisAsparaginyl-tRNA synthetasePyrococcus horikoshiiAsparaginyl-tRNA synthetase [EC:6.1.1.22] 2.40.50.140 104 11 78 3.63 4.65
1l0wA01 82.20 Aminoacyl-tRNA biosynthesisAspartyl-tRNA synthetase [EC:6.1.1.12]Thermus thermophilusAspartyl-tRNA synthetase 2.40.50.140 106 12 77 3.18 4.12
1nnxA00 81.34 Escherichia coli O157:H7Protein ygiW 2.40.50.200 93 10 70 2.48 3.53
3lgjB00 80.92 DNA replicationHomologous recombinationBartonella henselaeSingle-strand DNA-binding proteinSingle-stranded DNA-binding protein 2.40.50.140 96 8 74 3.20 4.29
2vw9B00 80.23 Homologous recombinationDNA replicationHelicobacter pyloriSingle-strand DNA-binding proteinSingle-stranded DNA-binding protein 2.40.50.140 105 11 69 2.30 3.32
1wocC00 79.70 Homologous recombinationPrimosomal replication protein NEscherichia coli K-12Primosomal replication protein n 2.40.50.140 98 9 69 2.20 3.17
1se8A01 79.38 Single-stranded DNA-binding proteinDeinococcus radiodurans 2.40.50.140 99 18 73 3.10 4.21
1lm0A00 77.64 Cytochrome c-type biogenesis protein ccmECytochrome c-type biogenesis protein CcmEShewanella oneidensis 2.40.50.140 101 11 73 2.75 3.73
2hqlA01 77.63 Uncharacterized protein MG376 homologMycoplasma pneumoniae 2.40.50.140 91 9 64 2.59 4.04
1qzgA00 77.35 Protection of telomeres protein 1Protection of telomeres protein 1Single-stranded telomeric DNA bindingProtein bindingCytosol 2.40.50.140 170 11 62 2.93 4.66
2jqoA01 76.41 Bacillus subtilisUncharacterized protein yobA 2.40.50.140 88 10 57 2.39 4.13
1cukA01 73.89 Homologous recombinationHolliday junction ATP-dependent DNA helicase ruvAHolliday junction DNA helicase RuvAEscherichia coli K-12 2.40.50.140 66 6 57 2.83 4.96
1g29102 71.56 Maltose transport protein MalKThermococcus litoralis 2.40.50.140 45 11 39 1.78 4.51
[1]
Displaying entries 1 to 21 (page 1 of 1)


[top]
Domain ATOM Sequence 

>pdb|1o7iB00
MEEKVGNLKPNMESVNVTVRVLEASEARQIQTKNGVRTISEAIVGDETGRVKLTLWGKHAGSIKEGQVVKIENAWTTAFK
GQVQLNAGSKTKIAEASEDGFPESSQIPENTPTA
BLAST against CATH

[top]
Domain COMBS Sequence 

>pdb|1o7iB00
MEEKVGNLKPNMESVNVTVRVLEASEARQIQTKNGVRTISEAIVGDETGRVKLTLWGKHAGSIKEGQVVKIENAWTTAFK
GQVQLNAGSKTKIAEASEDGFPESSQIPENTPTAPQQMR
BLAST against CATH

[top]
Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:31

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:31

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 14:51

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"