CATH Domain: 1o08A02 XML data for domain: 1o08A02

Molscript image for 1o08A02
1o08A02
PDB coordinates for domain 1o08A02

PDB 1o08, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.150 DNA polymerase; domain 1
1.10.150.240 Putative phosphatase; domain 2 Gene3D
1.10.150.240.1
1.10.150.240.1.1
1.10.150.240.1.1.1
1.10.150.240.1.1.1.1
1.10.150.240.1.1.1.1.2

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Segment boundaries for domain 1o08A02

Chopping figure for domain 1o08A02
DomainStart PDB ResidueStop PDB Residue
1o08A01 1001 1014
1o08A01 1093 1221
1o08A02 1015 1092

Structural Neighbourhood (21 entries)

There are 21 matching structural neighberhood comparisons for CATH ID 1.10.150.240.1.1.1.1.2 (SIMAX score < 5)

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Displaying entries 1 to 21 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1te2A02 87.18 Fructose and mannose metabolismMetabolic pathwaysRiboflavin metabolismThiamine metabolismMetal ion binding 1.10.150.240 70 11 89 2.87 3.20
1swvA02 85.57 Bacillus cereusPhosphonoacetaldehyde hydrolase 1.10.150.240 78 5 87 2.26 2.59
2fi1A02 84.18 Hydrolase, haloacid dehalogenase-like familyStreptococcus pneumoniae 1.10.150.240 64 12 82 2.50 3.05
2ah5A02 84.11 Glyoxylate and dicarboxylate metabolismMetabolic pathwaysPhosphoglycolate phosphatase [EC:3.1.3.18]Hydrolase, haloacid dehalogenase-like familyStreptococcus pneumoniae 1.10.150.240 64 17 82 2.47 3.01
2hi0A02 84.10 Putative phosphoglycolate phosphatasePhosphoglycolate phosphatase [EC:3.1.3.18]Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842Metabolic pathwaysGlyoxylate and dicarboxylate metabolism 1.10.150.240 86 11 80 2.83 3.53
2hdoA02 83.88 Phosphoglycolate phosphatase [EC:3.1.3.18]Lactobacillus plantarumMetabolic pathwaysGlyoxylate and dicarboxylate metabolismPhosphoglycolate phosphatase (Putative) 1.10.150.240 59 10 75 2.23 2.95
2nyvA02 83.37 Phosphoglycolate phosphatase [EC:3.1.3.18]Metabolic pathwaysGlyoxylate and dicarboxylate metabolismAquifex aeolicusPhosphoglycolate phosphatase 1.10.150.240 64 15 82 2.96 3.61
3dv9A02 83.30 Bacteroides vulgatus ATCC 8482Putative beta-phosphoglucomutase 1.10.150.240 64 12 80 2.64 3.27
2fdrA02 83.24 Agrobacterium tumefaciens str. C58Putative uncharacterized protein 1.10.150.240 64 10 79 2.39 3.01
2hszA02 82.94 Phosphoglycolate phosphatase [EC:3.1.3.18]Haemophilus somnus 129PTMetabolic pathwaysGlyoxylate and dicarboxylate metabolismPhosphoglycolate phosphatase 1.10.150.240 72 15 87 3.12 3.58
2px6A02 81.56 Insulin signaling pathwayFatty acid biosynthesisFatty acid synthaseProtein bindingMetabolic pathways 1.10.1470.20 73 16 87 3.90 4.47
2hcfA02 79.11 Chlorobaculum tepidumHydrolase, haloacid dehalogenase-like family 1.10.150.240 63 4 74 3.37 4.53
1u84A00 78.74 Geobacillus kaustophilusHypothetical conserved protein 1.10.340.20 81 8 82 3.83 4.63
1rykA00 78.57 UPF0337 protein yjbJProtein bindingEscherichia coli K-12 1.10.1470.10 69 4 76 3.58 4.65
3e58A02 78.31 Streptococcus thermophilus LMG 18311Beta-phosphoglucomutase, putative 1.10.150.240 62 16 79 3.10 3.90
3b40A02 78.20 Pseudomonas aeruginosaProbable dipeptidase 1.10.287.650 58 8 73 3.64 4.98
1qq5A02 77.59 (S)-2-haloacid dehalogenaseXanthobacter autotrophicus 1.10.150.240 75 6 71 3.19 4.44
2pkeA02 77.53 Xanthomonas campestris pv. campestrisPutative hydrolase of the HAD superfamilyHydrolase, haloacid delahogenase-like family 1.10.150.240 75 9 82 3.94 4.80
2qltA02 76.90 Response to osmotic stressNucleusProtein bindingMetabolic pathwaysCytoplasm 1.10.150.240 60 11 76 3.27 4.25
3ed5A02 75.03 Putative HAD-hydrolase yfnBBacillus subtilis2-haloacid dehalogenase [EC:3.8.1.2]1,2-Dichloroethane degradationGamma-Hexachlorocyclohexane degradation 1.10.150.240 79 7 78 3.91 4.98
2ptrB03 74.10 Purine metabolismAlanine, aspartate and glutamate metabolismMetabolic pathwaysAdenylosuccinate lyaseAdenylosuccinate lyase [EC:4.3.2.2] 1.10.40.30 64 9 74 3.69 4.96
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Displaying entries 1 to 21 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1o08A02
DTAEYHFRAWKALAEEIGINGVDRQFNEQLKGVSREDSLQKILDLADKKVSAEEFKELAKRKNDNYVKMIQDVSPADV
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1o08A02
DTAEYHFRAWKALAEEIGINGVDRQFNEQLKGVSREDSLQKILDLADKKVSAEEFKELAKRKNDNYVKMIQDVSPADV
BLAST against CATH

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Domain History Events (6)

Classification merge by cuff on 12 Nov 2010 19:13

COMMENT: merge fold and superfamily FINAL: merge: 1.10.164.10 --> 1.10.150.240

Domain assigned by auto on 28 Apr 2006 18:18

Assigning to "1.10.164.10" based on similarity with "1o03A02" (NWSI: 100, NWO: 100, SPS: 99.31, SPO: 100, RMSD: 0.11)

Flow stage update by auto on 28 Apr 2006 17:49

NW result present for Domain "1o08A02"

Flow stage update by auto on 28 Apr 2006 17:43

All required files are present for Domain "1o08A02"

Flow stage update by auto on 27 Apr 2006 17:31

Beginning processing for Domain "1o08A02"

Insertion by auto on 05 Mar 2006 17:24

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"