CATH Domain: 1o08A01 XML data for domain: 1o08A01

Molscript image for 1o08A01
1o08A01
PDB coordinates for domain 1o08A01

PDB 1o08, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.1000 Gene3D
3.40.50.1000.4
3.40.50.1000.4.1
3.40.50.1000.4.1.1
3.40.50.1000.4.1.1.1
3.40.50.1000.4.1.1.1.2

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Segment boundaries for domain 1o08A01

Chopping figure for domain 1o08A01
DomainStart PDB ResidueStop PDB Residue
1o08A01 1001 1014
1o08A01 1093 1221
1o08A02 1015 1092

Structural Neighbourhood (55 entries)

There are 55 matching structural neighberhood comparisons for CATH ID 3.40.50.1000.4.1.1.1.2 (SIMAX score < 5)

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Displaying entries 1 to 55 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1te2A01 90.40 Fructose and mannose metabolismMetabolic pathwaysRiboflavin metabolismThiamine metabolismMetal ion binding 3.40.50.1000 141 27 93 1.83 1.95
3e58B01 88.39 Streptococcus thermophilus LMG 18311Beta-phosphoglucomutase, putative 3.40.50.1000 136 24 90 2.24 2.47
2fdrA01 88.17 Agrobacterium tumefaciens str. C58Putative uncharacterized protein 3.40.50.1000 150 25 86 1.74 2.01
3d6jA01 88.06 Phosphoglycolate phosphatase [EC:3.1.3.18]Putative haloacid dehalogenase-like hydrolaseBacteroides fragilis NCTC 9343Glyoxylate and dicarboxylate metabolismMetabolic pathways 3.40.50.1000 137 18 90 1.92 2.12
2hszA01 87.23 Phosphoglycolate phosphatase [EC:3.1.3.18]Haemophilus somnus 129PTMetabolic pathwaysGlyoxylate and dicarboxylate metabolismPhosphoglycolate phosphatase 3.40.50.1000 148 20 89 2.21 2.46
2nyvA01 87.12 Phosphoglycolate phosphatase [EC:3.1.3.18]Glyoxylate and dicarboxylate metabolismMetabolic pathwaysAquifex aeolicusPhosphoglycolate phosphatase 3.40.50.1000 151 25 92 3.12 3.37
2fi1A01 87.03 Hydrolase, haloacid dehalogenase-like familyStreptococcus pneumoniae 3.40.50.1000 123 16 85 2.09 2.44
2ah5A01 86.90 Glyoxylate and dicarboxylate metabolismMetabolic pathwaysPhosphoglycolate phosphatase [EC:3.1.3.18]Hydrolase, haloacid dehalogenase-like familyStreptococcus pneumoniae 3.40.50.1000 142 19 90 1.93 2.12
2hi0A01 86.78 Putative phosphoglycolate phosphatasePhosphoglycolate phosphatase [EC:3.1.3.18]Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842Metabolic pathwaysGlyoxylate and dicarboxylate metabolism 3.40.50.1000 146 30 89 2.08 2.32
2hdoA01 86.49 Phosphoglycolate phosphatase [EC:3.1.3.18]Lactobacillus plantarumMetabolic pathwaysGlyoxylate and dicarboxylate metabolismPhosphoglycolate phosphatase (Putative) 3.40.50.1000 134 20 91 2.37 2.59
3ed5A01 86.36 Putative HAD-hydrolase yfnBBacillus subtilis2-haloacid dehalogenase [EC:3.8.1.2]1,2-Dichloroethane degradationGamma-Hexachlorocyclohexane degradation 3.40.50.1000 140 13 95 3.41 3.56
3dv9A01 85.47 Bacteroides vulgatus ATCC 8482Putative beta-phosphoglucomutase 3.40.50.1000 160 25 83 2.36 2.82
1qq5A01 84.97 (S)-2-haloacid dehalogenaseXanthobacter autotrophicus 3.40.50.1000 166 25 78 2.19 2.78
2qltA01 84.70 Response to osmotic stressNucleusProtein bindingMetabolic pathwaysCytoplasm 3.40.50.1000 171 23 80 3.35 4.15
2hcfA01 84.52 Chlorobaculum tepidumHydrolase, haloacid dehalogenase-like family 3.40.50.1000 156 20 83 2.11 2.53
2pkeA01 84.26 Xanthomonas campestris pv. campestrisPutative hydrolase of the HAD superfamilyHydrolase, haloacid delahogenase-like family 3.40.50.1000 152 14 85 2.95 3.45
2pr7A00 84.20 Corynebacterium glutamicumHaloacid dehalogenase/epoxide hydrolase family 3.40.50.1000 131 15 86 3.09 3.58
1swvA01 83.79 Bacillus cereusPhosphonoacetaldehyde hydrolase 3.40.50.1000 178 17 75 1.81 2.39
2b0cA01 83.77 Phosphatase yihXGlucose-1-phosphatase activityPutative hydrolase of the HAD superfamilyEscherichia coli K-12 3.40.50.1000 133 20 87 2.81 3.20
1u7pD00 83.27 Mus musculusMagnesium-dependent phosphatase 1 3.40.50.1000 161 22 76 2.16 2.83
3i28A01 83.00 PeroxisomeSoluble epoxide hydrolase [EC:3.3.2.10]Arachidonic acid metabolismEpoxide hydrolase activityEpoxide hydrolase 2 3.40.50.1000 135 25 86 2.80 3.24
1zjjB01 82.77 4-nitrophenyl phosphatase [EC:3.1.3.41]Pyrococcus horikoshiiGamma-Hexachlorocyclohexane degradationPutative uncharacterized protein PH1952 3.40.50.1000 146 20 86 2.73 3.14
2i6xA01 82.19 Hydrolase, haloacid dehalogenase-like familyPutative hydrolase of the HAD superfamilyPorphyromonas gingivalis 3.40.50.1000 127 18 85 2.78 3.27
1l7mB01 82.04 Phosphoserine phosphatase [EC:3.1.3.3]Methanocaldococcus jannaschiiPhosphoserine phosphataseGlycine, serine and threonine metabolismMetabolic pathways 3.40.50.1000 147 14 88 3.12 3.53
1nnlA01 81.82 Phosphoserine phosphatase [EC:3.1.3.3]Phosphoserine phosphataseGlycine, serine and threonine metabolismHomo sapiensPhosphoserine phosphatase activity 3.40.50.1000 154 15 80 2.74 3.40
2ho4B01 81.54 Mus musculusHaloacid dehalogenase-like hydrolase domain-containing protein 2 3.40.50.1000 159 22 83 2.81 3.38
2p11A01 81.48 Burkholderia xenovorans LB400Putative uncharacterized protein 3.40.50.1000 140 15 88 3.10 3.50
2hx1A01 81.24 Cytophaga hutchinsonii ATCC 33406Possible sugar phosphatase, HAD superfamily 3.40.50.1000 155 15 76 2.83 3.69
2oycA01 81.14 Vitamin B6 metabolismPyridoxal phosphate phosphataseHomo sapiensPyridoxal phosphatase [EC:3.1.3.74]Metabolic pathways 3.40.50.1000 167 19 74 2.40 3.23
1wr8A01 80.75 Pyrococcus horikoshiiPhosphoglycolate phosphatase 3.40.50.1000 161 14 83 3.02 3.63
3cnhA01 79.80 Hydrolase family proteinPutative hydrolase of the HAD superfamilyDeinococcus radiodurans 3.40.50.1000 114 18 77 2.66 3.42
1rlmA01 79.59 Sugar phosphatase supHSugar-phosphatase [EC:3.1.3.23]Escherichia coli K-12 3.40.50.1000 162 11 82 3.11 3.76
1cqzA01 79.46 PeroxisomeMus musculusSoluble epoxide hydrolase [EC:3.3.2.10]Arachidonic acid metabolismEpoxide hydrolase 2 3.40.50.1000 162 20 74 2.75 3.68
3fvvA01 79.43 Bordetella pertussisPutative uncharacterized protein 3.40.50.1000 148 12 81 2.96 3.62
1k1eD00 79.43 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]Haemophilus influenzaeLipopolysaccharide biosynthesisMetabolic pathways 3.40.50.1000 170 13 77 3.19 4.11
3bwvA01 79.21 Putative 5'(3')-deoxyribonucleotidaseStaphylococcus epidermidis ATCC 12228 3.40.50.1000 121 10 77 2.80 3.63
1wpgA04 79.17 Calcium ion bindingATP catabolic processER-Golgi intermediate compartmentCalcium-transporting ATPase activitySarcoplasmic/endoplasmic reticulum calcium ATPase 1 3.40.50.1000 156 10 80 3.77 4.70
3dnpA01 78.83 Stress response protein yhaXBacillus subtilis 3.40.50.1000 144 7 86 3.07 3.57
2i7dA01 78.68 Pyrimidine metabolism5'(3')-deoxyribonucleotidase, cytosolic typePurine metabolismDephosphorylationNucleus 3.40.50.1000 138 13 85 3.40 3.97
1ltqA02 78.67 Polynucleotide kinaseEnterobacteria phage T4 3.40.50.1000 136 13 75 3.34 4.45
1rkuA01 78.33 Glycine, serine and threonine metabolismMetabolic pathwaysPhosphoserine / homoserine phosphotransferase [EC:3.1.3.3 2.7.1.39]Pseudomonas aeruginosaHomoserine kinase 3.40.50.1000 111 16 74 3.02 4.07
1nf2A01 78.23 Thermotoga maritimaPutative uncharacterized protein 3.40.50.1000 161 12 84 3.89 4.61
1s2oA01 78.18 Synechocystis sp. PCC 6803Slr0953 protein 3.40.50.1000 173 14 77 3.22 4.16
1zgzA00 75.97 Two-component systemTorCAD operon transcriptional regulatory protein torRTwo-component system, OmpR family, torCAD operon response regulator TorRProtein bindingEscherichia coli K-12 3.40.50.2300 118 9 70 3.22 4.60
2qzjA00 75.62 Two-component response regulatorClostridium difficile 630 3.40.50.2300 119 8 71 3.40 4.76
2qxyA00 75.10 Thermotoga maritimaResponse regulatorTwo-component system, unclassified family, response regulator 3.40.50.2300 118 9 70 3.48 4.92
2zayA00 75.03 Response regulator receiver proteinDesulfuromonas acetoxidans DSM 684 3.40.50.2300 123 7 71 3.41 4.77
1kjnA00 74.67 Methanothermobacter thermautotrophicus str. Delta HConserved protein 3.40.50.10160 148 9 79 3.73 4.68
1s8nA01 74.65 Response regulator NasTProbable transcriptional regulatory protein pdtaRMycobacterium tuberculosis 3.40.50.2300 132 9 70 3.40 4.81
1qo0D01 74.60 Pseudomonas aeruginosaAliphatic amidase regulator 3.40.50.2300 127 6 69 3.31 4.78
2rjnA00 74.48 Response regulator receiver:Metal-dependent phosphohydrolase, HD subdomainNeptuniibacter caesariensis 3.40.50.2300 135 5 71 3.37 4.72
3gygC01 74.46 Bacillus subtilisNTD biosynthesis operon putative hydrolase ntdB 3.40.50.1000 191 15 67 3.36 4.97
1dbwB00 74.46 Sinorhizobium melilotiTranscriptional regulatory protein fixJ 3.40.50.2300 125 5 70 3.49 4.94
3b8cA03 74.44 Oxidative phosphorylationArabidopsis thalianaPlasma membraneATPase 2, plasma membrane-typeProtein binding 3.40.50.1000 163 8 80 4.00 4.98
2qr3A00 74.32 Bacteroides fragilisTwo-component system response regulator 3.40.50.2300 119 11 70 3.28 4.64
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Displaying entries 1 to 55 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1o08A01
MFKAVLFDLDGVITYPGILQLLKDLRSNKIKIALASASKNGPFLLERMNLTGYFDAIADPAEVAASKPAPDIFIAAAHAV
GVAPSESIGLEDSQAGIQAIKDSGALPIGVGRPEDLGDDIVIVPDTSHYTLEFLKEVWLQKQK
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1o08A01
MFKAVLFDLDGVITYPGILQLLKDLRSNKIKIALASASKNGPFLLERMNLTGYFDAIADPAEVAASKPAPDIFIAAAHAV
GVAPSESIGLEDSQAGIQAIKDSGALPIGVGRPEDLGDDIVIVPDTSHYTLEFLKEVWLQKQK
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:18

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:18

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:24

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"