CATH Domain: 1m0kA00 XML data for domain: 1m0kA00

Molscript image for 1m0kA00
1m0kA00
PDB coordinates for domain 1m0kA00

PDB 1m0k, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.20 Up-down Bundle
1.20.1070 Rhopdopsin 7-helix transmembrane proteins
1.20.1070.10 Rhopdopsin 7-helix transmembrane proteins Gene3D
1.20.1070.10.1
1.20.1070.10.1.1
1.20.1070.10.1.1.1
1.20.1070.10.1.1.1.1
1.20.1070.10.1.1.1.1.1

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Segment boundaries for domain 1m0kA00

Chopping figure for domain 1m0kA00
DomainStart PDB ResidueStop PDB Residue
1m0kA00 5 231

Structural Neighbourhood (4 entries)

There are 4 matching structural neighberhood comparisons for CATH ID 1.20.1070.10.1.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 4 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1c8rA00 98.18 BacteriorhodopsinHalobacterium salinarumBacteriorhodopsin 1.20.1070.10 222 99 100 0.34 0.34
1h2sA00 92.70 Natronomonas pharaonisProtein bindingSensory rhodopsin-2 1.20.1070.10 225 27 95 1.47 1.54
1xioA00 91.15 Nostoc sp. PCC 7120BacteriorhodopsinBacteriorhodopsin 1.20.1070.10 217 27 93 1.97 2.11
2jafA00 90.28 HalorhodopsinHalobacterium salinarumHalorhodopsin 1.20.1070.10 242 32 91 1.71 1.86
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Displaying entries 1 to 4 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1m0kA00
TGRPEWIWLALGTALMGLGTLYFLVKGMGVSDPDAKKFYAITTLVPAIAFTMYLSMLLGYGLTMVPFGGEQNPIYWARYA
DWLFTTPLLLLDLALLVDADQGTILALVGADGIMIGTGLVGALTKVYSYRFVWWAISTAAMLYILYVLFFGFSMRPEVAS
TFKVLRNVTVVLWSAYPVVWLIGSEGAGIVPLNIETLLFMVLDVSAKVGFGLILLRSRAIFG
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1m0kA00
TGRPEWIWLALGTALMGLGTLYFLVKGMGVSDPDAKKFYAITTLVPAIAFTMYLSMLLGYGLTMVPFGGEQNPIYWARYA
DWLFTTPLLLLDLALLVDADQGTILALVGADGIMIGTGLVGALTKVYSYRFVWWAISTAAMLYILYVLFFGFTSKAESMR
PEVASTFKVLRNVTVVLWSAYPVVWLIGSEGAGIVPLNIETLLFMVLDVSAKVGFGLILLRSRAIFG
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:20

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:20

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 14:42

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"