CATH Domain: 1bs0A02 XML data for domain: 1bs0A02

Molscript image for 1bs0A02
1bs0A02
PDB coordinates for domain 1bs0A02

PDB 1bs0, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.640 Aspartate Aminotransferase; domain 2
3.40.640.10 Type I PLP-dependent aspartate aminotransferase-like (Major domain) Gene3D
3.40.640.10.20
3.40.640.10.20.1
3.40.640.10.20.1.1
3.40.640.10.20.1.1.1
3.40.640.10.20.1.1.1.1

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Segment boundaries for domain 1bs0A02

Chopping figure for domain 1bs0A02
DomainStart PDB ResidueStop PDB Residue
1bs0A01 25 56
1bs0A01 285 384
1bs0A02 57 284

Structural Neighbourhood (25 entries)

There are 25 matching structural neighberhood comparisons for CATH ID 3.40.640.10.20.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 25 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1fc4A01 90.83 Glycine, serine and threonine metabolismMetal ion bindingLigase activity2-amino-3-ketobutyrate coenzyme A ligaseGlycine C-acetyltransferase [EC:2.3.1.29] 3.40.640.10 230 31 96 1.35 1.40
2gsaA02 83.72 Porphyrin and chlorophyll metabolismGlutamate-1-semialdehyde 2,1-aminomutaseGlutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]Synechococcus elongatus PCC 6301Metabolic pathways 3.40.640.10 249 17 87 2.60 2.98
1mdoA01 83.65 Amino sugar and nucleotide sugar metabolismUDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferaseTwo-component systemSalmonella enterica subsp. enterica serovar TyphimuriumUDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase [EC:2.6.1.-] 3.40.640.10 226 15 86 2.86 3.31
1p3wA02 83.53 Thiamine metabolismCysteine desulfurase activitySelenocysteine lyase activityCysteine desulfuraseIron-sulfur cluster assembly 3.40.640.10 247 12 84 3.12 3.71
1o69A01 83.41 Campylobacter jejuniAminotransferase homolog 3.40.640.10 233 11 89 3.59 4.02
2oatA02 83.30 Ornithine--oxo-acid transaminase [EC:2.6.1.13]Arginine and proline metabolismOrnithine-oxo-acid transaminase activityVisual perceptionHomo sapiens 3.40.640.10 250 15 86 2.67 3.08
1o4sA02 82.86 Tyrosine metabolismThermotoga maritimaArginine and proline metabolismAspartate aminotransferase [EC:2.6.1.1]Metabolic pathways 3.40.640.10 221 11 85 3.24 3.77
2yrrA02 82.37 Thermus thermophilus HB8Aminotransferase, class V 3.40.640.10 241 14 87 3.58 4.11
1m32A02 82.27 2-aminoethylphosphonate--pyruvate transaminaseSalmonella enterica subsp. enterica serovar Typhimurium2-aminoethylphosphonate-pyruvate transaminase [EC:2.6.1.37]Phosphonate and phosphinate metabolismMetabolic pathways 3.40.640.10 237 13 86 3.60 4.16
1zodA02 81.69 2,2-dialkylglycine decarboxylaseBurkholderia cepacia 3.40.640.10 264 17 83 2.96 3.54
1xi9A02 81.64 Pyrococcus furiosusAminotransferase [EC:2.6.1.-]Alanine aminotransferase 3.40.640.10 242 10 89 3.50 3.90
1gd9A02 81.55 Tyrosine metabolismArginine and proline metabolismAspartate aminotransferase [EC:2.6.1.1]Pyrococcus horikoshiiMetabolic pathways 3.40.640.10 223 13 86 3.59 4.13
3dydA02 81.04 Tyrosine metabolismL-tyrosine:2-oxoglutarate aminotransferase activityPhenylalanine metabolismMetabolic pathwaysUbiquinone and other terpenoid-quinone biosynthesis 3.40.640.10 244 11 87 3.39 3.88
3ffhB02 80.98 Tyrosine metabolismListeria innocuaHistidinol-phosphate aminotransferase [EC:2.6.1.9]Histidine metabolismMetabolic pathways 3.40.640.10 208 10 85 3.72 4.33
1sffA02 80.87 Valine, leucine and isoleucine degradationPropanoate metabolismMetabolic pathwaysButanoate metabolismBeta-Alanine metabolism 3.40.640.10 260 13 85 2.99 3.52
2qmaA03 80.66 Diaminobutyrate-2-oxoglutarate transaminase [EC:2.6.1.76]Vibrio parahaemolyticusGlycine, serine and threonine metabolismDiaminobutyrate-pyruvate transaminase & L-2,4-diaminobutyrate decarboxylaseMetabolic pathways 3.40.640.10 238 17 84 3.00 3.53
3ftbA02 80.54 Tyrosine metabolismHistidinol-phosphate aminotransferase [EC:2.6.1.9]Histidine metabolismPhenylalanine metabolismMetabolic pathways 3.40.640.10 222 9 89 3.31 3.68
1fg7A01 80.41 Tyrosine metabolismHistidine metabolismMetabolic pathwaysPhenylalanine metabolismNovobiocin biosynthesis 3.40.640.10 203 12 82 3.06 3.71
1c7nA02 80.23 Treponema denticolaHemolysin 3.40.640.10 225 8 86 3.44 3.96
1d2fA02 79.67 Nitrogen metabolismSelenoamino acid metabolismSulfur metabolismMetabolic pathwaysCysteine and methionine metabolism 3.40.640.10 243 16 87 3.44 3.92
1uu1A02 79.44 Thermotoga maritimaTyrosine metabolismHistidinol-phosphate aminotransferase [EC:2.6.1.9]Histidine metabolismMetabolic pathways 3.40.640.10 203 9 82 3.18 3.84
1svvA01 79.21 Leishmania major strain FriedlinThreonine aldolase [EC:4.1.2.5]Glycine, serine and threonine metabolismMetabolic pathwaysPutative uncharacterized protein 3.40.640.10 242 11 88 3.74 4.25
3k40A02 78.05 Dopamine biosynthetic process from tyrosineDevelopmental pigmentationGrowthProtein bindingDrosophila melanogaster 3.40.640.10 267 11 81 3.52 4.33
1ajsB02 77.03 Tyrosine metabolismArginine and proline metabolismSus scrofaAspartate aminotransferase [EC:2.6.1.1]Aspartate aminotransferase, cytoplasmic 3.40.640.10 278 10 78 3.31 4.22
1ohvA02 76.47 Sus scrofaMitochondrial matrixSuccinate-semialdehyde dehydrogenase bindingProtein homodimerization activityPyridoxal phosphate binding 3.40.640.10 295 9 73 3.00 4.06
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Displaying entries 1 to 25 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1bs0A02
QIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLGYSRALLFISGFAANQAVIAAMMAKEDRIAADRLSHASL
LEAASLSPSQLRRFAHNDVTHLARLLASPCPGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQG
RGSCWLQKVKPELLVVTFGKGFGVSGAAVLCSSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVIR
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1bs0A02
QIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLGYSRALLFISGFAANQAVIAAMMAKEDRIAADRLSHASL
LEAASLSPSQLRRFAHNDVTHLARLLASPCPGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQG
RGSCWLQKVKPELLVVTFGKGFGVSGAAVLCSSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVIR
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:27

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:27

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:13

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"