CATH Domain: 1arbA01 XML data for domain: 1arbA01

Molscript image for 1arbA01
1arbA01
PDB coordinates for domain 1arbA01

PDB 1arb, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.40 Beta Barrel
2.40.10 Thrombin, subunit H
2.40.10.10 Trypsin-like serine proteases Gene3D
2.40.10.10.17
2.40.10.10.17.1
2.40.10.10.17.1.1
2.40.10.10.17.1.1.1
2.40.10.10.17.1.1.1.1

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Segment boundaries for domain 1arbA01

Chopping figure for domain 1arbA01
DomainStart PDB ResidueStop PDB Residue
1arbA01 1 24
1arbA01 134 231
1arbA02 25 131
1arbA02 233 262

Structural Neighbourhood (16 entries)

There are 16 matching structural neighberhood comparisons for CATH ID 2.40.10.10.17.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 16 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1eq9A01 81.31 Chymotrypsin-1Solenopsis invicta 2.40.10.10 117 11 86 3.34 3.88
1elvA02 80.68 Serine-type endopeptidase activitySystemic lupus erythematosusComplement C1s subcomponentHomo sapiensComplement component 1, s subcomponent [EC:3.4.21.42] 2.40.10.10 126 8 81 3.26 3.99
1si5H01 80.49 Pathways in cancerHepatocyte growth factorEpithelial to mesenchymal transitionRenal cell carcinomaCytokine-cytokine receptor interaction 2.40.10.10 119 11 86 3.67 4.22
1bioA01 80.34 Serine-type endopeptidase activityHomo sapiensComponent factor D [EC:3.4.21.46]Complement and coagulation cascadesComplement factor D 2.40.10.10 122 11 87 3.86 4.40
2asuB01 80.33 Hepatocyte growth factor-like proteinHomo sapiens 2.40.10.10 122 5 86 3.58 4.16
2qf3B02 80.30 Protease degSProtein bindingSerine protease DegS [EC:3.4.21.-]Escherichia coli K-12 2.40.10.10 103 9 70 3.20 4.54
1k2i101 80.25 Bos taurusChymotrypsinogen A 2.40.10.10 118 11 84 3.60 4.26
2hlcA02 80.01 CollagenaseHypoderma lineatum 2.40.10.10 126 8 85 3.65 4.26
1gvzA01 79.88 Equus caballusKallikrein-1E2 2.40.10.10 121 8 86 4.00 4.60
2halA02 79.83 Human hepatitis A virus Hu/Australia/HM175/1976Genome polyprotein 2.40.10.10 103 9 68 3.23 4.75
1eaxA01 79.74 Suppressor of tumorigenicity protein 14 [EC:3.4.21.109]Integral to plasma membraneSuppressor of tumorigenicity 14 proteinHomo sapiensProteolysis 2.40.10.10 126 10 84 3.68 4.33
2o8tA01 79.62 Regulation of smooth muscle cell migrationCell surfaceUrokinase-type plasminogen activatorSignal transductionProteolysis 2.40.10.10 128 12 84 3.67 4.35
2bvrH01 78.52 FibrinolysisSerine-type endopeptidase activityProthrombinSoluble fractionPositive regulation of protein phosphorylation 2.40.10.10 132 12 82 3.78 4.58
1q3xA02 78.06 Serine-type endopeptidase activityHomo sapiensMannan-binding lectin serine protease 2Calcium-dependent protein bindingComplement activation, lectin pathway 2.40.10.10 137 10 80 3.78 4.71
1lcyA02 77.01 Serine-type endopeptidase activityHtrA serine peptidase 2 [EC:3.4.21.108]Endoplasmic reticulum membraneParkinson's diseaseNucleus 2.40.10.10 84 11 67 3.35 4.98
2ey4C00 72.05 Pyrococcus furiosusSmall nucleolar rnp gar1-like proteinRNA-binding protein 2.40.10.230 73 6 48 2.36 4.88
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Displaying entries 1 to 16 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1arbA01
GVSGSCNIDVVCPEGDGRRDIIRAWDRRDQNYPGAIAIHHPNVAEKRISNSTSPTSFVAWGGGAGTTHLNVQWQPSGGVT
EPGSSGSPIYSPEKRVLGQLHGGPSSCSATGTNRSDQYGRVF
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1arbA01
GVSGSCNIDVVCPEGDGRRDIIRAWDRRDQNYPGAIAIHHPNVAEKRISNSTSPTSFVAWGGGAGTTHLNVQWQPSGGVT
EPGSSGSPIYSPEKRVLGQLHGGPSSCSATGTNRSDQYGRVF
BLAST against CATH

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Domain History Events (4)

Update comment by auto on 16 Oct 2007 19:44

Around September/October 2007, this domain was renamed from "1arb001" to "1arbA01" as part of the work to deal with the remediation of the PDB (see http://remediation.wwpdb.org). Please see ticket:207 or wiki:Remediation on the CATH Trac system for more details.

Set cath from cathlist by auto on 05 Mar 2006 18:27

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:27

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:09

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"