S100 Family: 3.40.50.150.8.1.1.1

Representative domain: 2i7cB02

Classification Lineage (3.40.50.150.8.1.1.1)

CATH Code	Level Description	Links
3	Alpha Beta
3.40	3-Layer(aba) Sandwich
3.40.50	Rossmann fold
3.40.50.150	Vaccinia Virus protein VP39	Gene3D
3.40.50.150.8
3.40.50.150.8.1
3.40.50.150.8.1.1
3.40.50.150.8.1.1.1

Summary of Non-Redundant Representatives


-	-	-	-	-	-	-	-	21

Non-Redundant Representatives (21)
Functional Families
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What is a Non-Redundant Representative?

CATH is a tree-like organisation of nodes that begins with the class node (i.e. the first branch-point of the tree) and ends with the domain nodes (i.e. the leaves of the tree). Each node below the class have a parent that they belong to, e.g. the parent of the H level (Homologous superfamily) is the T (Topology). Additionally, each node above the domains have child nodes that belong to them, e.g. the child nodes of a given H (Homologous superfamily) level are the S35 families (domains clustered at > 35% sequence identity).

S100 Count Entries in S100 Family 3.40.50.150.8.1.1.1 (21)

CATH code	Domain ID	Keywords
3.40.50.150.8.1.1.1.1	2i7cB02	Arginine and proline metabolism, spermidine synthase [EC:2.5.1.16], Spermidine synthase, Plasmodium falciparum 3D7, Cysteine and methionine metabolism, Glutathione metabolism, beta-Alanine metabolism, Metabolic pathways
3.40.50.150.8.1.1.1.2	2i7cA02	Plasmodium falciparum 3D7, Spermidine synthase, spermidine synthase [EC:2.5.1.16], Arginine and proline metabolism, Metabolic pathways, beta-Alanine metabolism, Cysteine and methionine metabolism, Glutathione metabolism
3.40.50.150.8.1.1.1.3	2i7cC02	Glutathione metabolism, Cysteine and methionine metabolism, beta-Alanine metabolism, Metabolic pathways, Arginine and proline metabolism, spermidine synthase [EC:2.5.1.16], Spermidine synthase, Plasmodium falciparum 3D7
3.40.50.150.8.1.1.1.4	2pt6B02	Metabolic pathways, beta-Alanine metabolism, Cysteine and methionine metabolism, Glutathione metabolism, Plasmodium falciparum 3D7, Spermidine synthase, spermidine synthase [EC:2.5.1.16], Arginine and proline metabolism
3.40.50.150.8.1.1.1.5	3b7pB02	Metabolic pathways, Cysteine and methionine metabolism, Glutathione metabolism, beta-Alanine metabolism, Spermidine synthase, Plasmodium falciparum 3D7, Arginine and proline metabolism, spermidine synthase [EC:2.5.1.16]
3.40.50.150.8.1.1.1.6	2hteC02	Cysteine and methionine metabolism, Glutathione metabolism, beta-Alanine metabolism, Metabolic pathways, Arginine and proline metabolism, spermidine synthase [EC:2.5.1.16], Spermidine synthase, Plasmodium falciparum 3D7
3.40.50.150.8.1.1.1.7	2pt6A02	Plasmodium falciparum 3D7, Spermidine synthase, spermidine synthase [EC:2.5.1.16], Arginine and proline metabolism, Metabolic pathways, beta-Alanine metabolism, Glutathione metabolism, Cysteine and methionine metabolism
3.40.50.150.8.1.1.1.8	2pt6C02	Metabolic pathways, Cysteine and methionine metabolism, Glutathione metabolism, beta-Alanine metabolism, Spermidine synthase, Plasmodium falciparum 3D7, Arginine and proline metabolism, spermidine synthase [EC:2.5.1.16]
3.40.50.150.8.1.1.1.9	3b7pA02	Plasmodium falciparum 3D7, Spermidine synthase, spermidine synthase [EC:2.5.1.16], Arginine and proline metabolism, Metabolic pathways, beta-Alanine metabolism, Glutathione metabolism, Cysteine and methionine metabolism
3.40.50.150.8.1.1.1.10	3b7pC02	Cysteine and methionine metabolism, Glutathione metabolism, beta-Alanine metabolism, Metabolic pathways, Arginine and proline metabolism, spermidine synthase [EC:2.5.1.16], Spermidine synthase, Plasmodium falciparum 3D7
3.40.50.150.8.1.1.1.11	2hteA02	Spermidine synthase, Plasmodium falciparum 3D7, Arginine and proline metabolism, spermidine synthase [EC:2.5.1.16], Metabolic pathways, Glutathione metabolism, Cysteine and methionine metabolism, beta-Alanine metabolism
3.40.50.150.8.1.1.1.12	2hteB02	spermidine synthase [EC:2.5.1.16], Arginine and proline metabolism, Plasmodium falciparum 3D7, Spermidine synthase, beta-Alanine metabolism, Cysteine and methionine metabolism, Glutathione metabolism, Metabolic pathways
3.40.50.150.8.1.1.1.13	2pwpA02	Cysteine and methionine metabolism, Glutathione metabolism, beta-Alanine metabolism, Metabolic pathways, Arginine and proline metabolism, spermidine synthase [EC:2.5.1.16], Spermidine synthase, Plasmodium falciparum 3D7
3.40.50.150.8.1.1.1.14	2pwpC02	beta-Alanine metabolism, Glutathione metabolism, Cysteine and methionine metabolism, Metabolic pathways, spermidine synthase [EC:2.5.1.16], Arginine and proline metabolism, Plasmodium falciparum 3D7, Spermidine synthase
3.40.50.150.8.1.1.1.15	2pwpB02	Glutathione metabolism, Cysteine and methionine metabolism, beta-Alanine metabolism, Metabolic pathways, Arginine and proline metabolism, spermidine synthase [EC:2.5.1.16], Spermidine synthase, Plasmodium falciparum 3D7
3.40.50.150.8.1.1.1.16	2pt9B02	Metabolic pathways, beta-Alanine metabolism, Glutathione metabolism, Cysteine and methionine metabolism, Plasmodium falciparum 3D7, Spermidine synthase, spermidine synthase [EC:2.5.1.16], Arginine and proline metabolism
3.40.50.150.8.1.1.1.17	2pt9A02	Arginine and proline metabolism, spermidine synthase [EC:2.5.1.16], Spermidine synthase, Plasmodium falciparum 3D7, Cysteine and methionine metabolism, Glutathione metabolism, beta-Alanine metabolism, Metabolic pathways
3.40.50.150.8.1.1.1.18	2pt9C02	Arginine and proline metabolism, spermidine synthase [EC:2.5.1.16], Spermidine synthase, Plasmodium falciparum 3D7, Glutathione metabolism, Cysteine and methionine metabolism, beta-Alanine metabolism, Metabolic pathways
3.40.50.150.8.1.1.1.19	2pssA02	beta-Alanine metabolism, Cysteine and methionine metabolism, Glutathione metabolism, Metabolic pathways, spermidine synthase [EC:2.5.1.16], Arginine and proline metabolism, Plasmodium falciparum 3D7, Spermidine synthase
3.40.50.150.8.1.1.1.20	2pssC02	Glutathione metabolism, Cysteine and methionine metabolism, beta-Alanine metabolism, Metabolic pathways, Arginine and proline metabolism, spermidine synthase [EC:2.5.1.16], Spermidine synthase, Plasmodium falciparum 3D7
3.40.50.150.8.1.1.1.21	2pssB02	beta-Alanine metabolism, Cysteine and methionine metabolism, Glutathione metabolism, Metabolic pathways, spermidine synthase [EC:2.5.1.16], Arginine and proline metabolism, Plasmodium falciparum 3D7, Spermidine synthase

The information on Functional Families (FunFams) is currently being updated and will be released by the end of March 2012. The pages will include the following features:

Multiple alignments for each functional family
Representative structure for each functional with known catalytic and interface residues highlighted, along with conserved residues predicted by scorecons
Detailed functional information on diversity and conservation within Functional families
Multi-domain architectures

In the meantime, please find a summary of information on the FunFams and protein networks within this superfamily on the Gene3D pages:

http://gene3d.biochem.ucl.ac.uk/superfamily/?accession=3.40.50.150.8.1.1.1

What is a Non-Redundant Representative?

Why can't I have a multiple structural alignment of the whole superfamily?

The simple answer is that some of the larger superfamilies in CATH comprise relatives which are very structurally diverse, having different secondary structure embellishments. Attempting to provide a global alignment of all domains in the superfamily would result in poor quality alignments. As a result, structural alignments in CATH are generated by first clustering together the structures that have at least some recognisable structural similarity using a normalised RMSD score (SIMAX = RMSDxNumber of residues in the largest domain/number of aligned residues) less than a given cutoff.

What is an Close Structural Cluster?

A Close Structural Cluster describes a cluster of two or more CATH domains that have been grouped together due to their close structural similarity (SIMAX score < 5Å where SIMAX = RMSD x Number of residues in the larger domain/number of aligned residues).

What is a Distant Structural Cluster?

A Distant Structural Cluster describes a cluster of two or CATH domains that have been grouped together with a more relaxed structural similarity threshold to investigate more distant evolutionary similarities (SIMAX score < 5Å where SIMAX = RMSD x Number of residues in the larger domain/number of aligned residues).

What is a Structural Neighbour?

The term "structural neighbour" is used here to describe two CATH domains that share a degree of structural similarity. The SSAP algorithm is used to calculate this similarity and works by generating a structure-based pairwise alignment of the two domains then scoring this alignment using a RMSD score which has been normalised by the length of the larger domain divided by the number of aligned residues (SIMAX).

S100 Family: 3.40.50.150.8.1.1.1

Classification Lineage (3.40.50.150.8.1.1.1)

Summary of Non-Redundant Representatives

What is a Non-Redundant Representative?

S100 Count Entries in S100 Family 3.40.50.150.8.1.1.1 (21)

What is a Non-Redundant Representative?

Why can't I have a multiple structural alignment of the whole superfamily?

What is an Close Structural Cluster?

What is a Distant Structural Cluster?

What is a Structural Neighbour?

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