Homologous Superfamily: 3.40.190.10

Molscript image for 1ixhA01
Representative domain: 1ixhA01
PDB coordinates for domain 1ixhA01

Periplasmic binding protein-like II

Classification Lineage (3.40.190.10)

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.190 D-Maltodextrin-Binding Protein; domain 2
3.40.190.10 Periplasmic binding protein-like II Gene3D

Summary of Non-Redundant Representatives
- - - - 110 138 195 414 1480

S35 Family Entries in Homologous Superfamily 3.40.190.10 (110)

CATH Level CATH code Representative Domain Representative Keywords Representative Thumbnail Number of Domains
3.40.190.10.1 1ixhA01 Phosphate-binding protein pstSTwo-component systemPhosphate transport system substrate-binding proteinEscherichia coli K-12ABC transporters Molscript image for 1ixhA01 16
3.40.190.10.2 1q35A01 Iron binding protein FbpAMannheimia haemolytica Molscript image for 1q35A01 6
3.40.190.10.3 1nnfA02 Haemophilus influenzaeIron-utilization periplasmic proteinABC transportersIron(III) transport system substrate-binding protein Molscript image for 1nnfA02 36
3.40.190.10.4 1nnfA01 Haemophilus influenzaeIron-utilization periplasmic proteinIron(III) transport system substrate-binding proteinABC transporters Molscript image for 1nnfA01 36
3.40.190.10.5 3g3kA01 Ubiquitin protein ligase bindingNegative regulation of synaptic transmission, glutamatergicRattus norvegicusReceptor clusteringProtein homodimerization activity Molscript image for 3g3kA01 316
3.40.190.10.6 1ryoA01 Basal plasma membraneSerotransferrinProtein bindingCoated pitEarly endosome Molscript image for 1ryoA01 36
3.40.190.10.7 1ixhA02 Phosphate-binding protein pstSTwo-component systemPhosphate transport system substrate-binding proteinEscherichia coli K-12ABC transporters Molscript image for 1ixhA02 16
3.40.190.10.8 1ryoA02 Basal plasma membraneSerotransferrinProtein bindingCoated pitEarly endosome Molscript image for 1ryoA02 92
3.40.190.10.9 3e13X01 Putative iron-uptake ABC transport system,periplasmic iron-binding proteinCampylobacter jejuniProtein bindingABC transportersIron(III) transport system substrate-binding protein Molscript image for 3e13X01 10
3.40.190.10.10 2onsA01 Molybdate/tungstate-binding protein wtpAPutative sulfate transport system substrate-binding proteinArchaeoglobus fulgidusABC transporters Molscript image for 2onsA01 4
3.40.190.10.11 1us5A02 Glutamate receptorThermus thermophilus Molscript image for 1us5A02 2
3.40.190.10.12 3ib0A01 LactotransferrinBos taurusSerine endopeptidases. Molscript image for 3ib0A01 56
3.40.190.10.13 1xvxA01 YfuAYersinia enterocolitica (type O:8) Molscript image for 1xvxA01 2
3.40.190.10.14 1xvxA02 YfuAYersinia enterocolitica (type O:8) Molscript image for 1xvxA02 2
3.40.190.10.15 1q35A02 Iron binding protein FbpAMannheimia haemolytica Molscript image for 1q35A02 6
3.40.190.10.16 1iejA01 OvotransferrinGallus gallus Molscript image for 1iejA01 11
3.40.190.10.17 1us5A01 Glutamate receptorThermus thermophilus Molscript image for 1us5A01 2
3.40.190.10.18 1atgA01 Azotobacter vinelandiiBinding protein Molscript image for 1atgA01 1
3.40.190.10.19 1p99A01 Lactococcal lipoproteinD-methionine transport system substrate-binding proteinStaphylococcus aureus subsp. aureus Mu50ABC transporters Molscript image for 1p99A01 1
3.40.190.10.20 1sbpA01 Salmonella enterica subsp. enterica serovar TyphimuriumSulfate-binding proteinSulfate transport system substrate-binding proteinABC transporters Molscript image for 1sbpA01 1
3.40.190.10.21 1jetA01 Salmonella enterica subsp. enterica serovar TyphimuriumPeptide/nickel transport system substrate-binding proteinABC transportersPeriplasmic oligopeptide-binding protein Molscript image for 1jetA01 35
3.40.190.10.22 1pb7A01 Rattus norvegicusCalcium signaling pathwayAlzheimer's diseaseProtein bindingNeuroactive ligand-receptor interaction Molscript image for 1pb7A01 12
3.40.190.10.23 1sbpA02 Salmonella enterica subsp. enterica serovar TyphimuriumSulfate-binding proteinSulfate transport system substrate-binding proteinABC transporters Molscript image for 1sbpA02 1
3.40.190.10.24 3c9hA02 ABC transporter, substrate binding protein (Iron)Agrobacterium tumefaciens str. C58Iron(III) transport system substrate-binding proteinABC transporters Molscript image for 3c9hA02 2
3.40.190.10.25 1twyD02 Vibrio choleraeTwo-component systemPhosphate transport system substrate-binding proteinABC transporter, periplasmic substrate-binding proteinABC transporters Molscript image for 1twyD02 8
3.40.190.10.26 1potA02 Outer membrane-bounded periplasmic spacePolyamine transportPolyamine-transporting ATPase activitySpermidine/putrescine transport system substrate-binding proteinSpermidine/putrescine-binding periplasmic protein Molscript image for 1potA02 5
3.40.190.10.27 1lstA01 Lysine-arginine-ornithine-binding periplasmic proteinSalmonella enterica subsp. enterica serovar TyphimuriumLysine/arginine/ornithine transport system substrate-binding proteinABC transporters Molscript image for 1lstA01 7
3.40.190.10.28 1ii5A01 Synechocystis sp. PCC 6803Slr1257 proteinPolar amino acid transport system substrate-binding protein Molscript image for 1ii5A01 3
3.40.190.10.29 3cvgA01 Molscript image for 3cvgA01 3
3.40.190.10.30 1al3A02 Klebsiella pneumoniaeLysR family transcriptional regulator, cys regulon transcriptional activatorHTH-type transcriptional regulator cysB Molscript image for 1al3A02 5
3.40.190.10.31 1atgA02 Azotobacter vinelandiiBinding protein Molscript image for 1atgA02 1
3.40.190.10.32 1r9lA01 Glycine betaine/proline transport system substrate-binding proteinGlycine betaine-binding periplasmic proteinProtein bindingABC transportersEscherichia coli K-12 Molscript image for 1r9lA01 2
3.40.190.10.33 2onsA02 Putative sulfate transport system substrate-binding proteinMolybdate/tungstate-binding protein wtpAArchaeoglobus fulgidusABC transporters Molscript image for 2onsA02 4
3.40.190.10.34 1h44A01 Serine-type endopeptidase activityLactotransferrinSerine endopeptidases.Humoral immune responseStored secretory granule Molscript image for 1h44A01 9
3.40.190.10.35 1xs5A01 Treponema pallidumMembrane lipoprotein TpN32D-methionine transport system substrate-binding proteinABC transporters Molscript image for 1xs5A01 1
3.40.190.10.36 3gzgA01 Molybdate transport system substrate-binding proteinMolybdate-binding periplasmic protein; permeaseABC transportersXanthomonas axonopodis pv. citri Molscript image for 3gzgA01 8
3.40.190.10.37 1ursA02 Maltose binding proteinAlicyclobacillus acidocaldarius subsp. acidocaldarius Molscript image for 1ursA02 5
3.40.190.10.38 1mqiA01 Glutamate receptor 2Rattus norvegicusSynaptic transmissionPerikaryonDendrite cytoplasm Molscript image for 1mqiA01 132
3.40.190.10.39 1potA01 Outer membrane-bounded periplasmic spacePolyamine transportPolyamine-transporting ATPase activitySpermidine/putrescine transport system substrate-binding proteinABC transporters Molscript image for 1potA01 9
3.40.190.10.40 1sw5A01 Osmoprotection protein (ProX)Archaeoglobus fulgidusOsmoprotectant transport system substrate-binding proteinABC transporters Molscript image for 1sw5A01 9
3.40.190.10.41 1pb7A02 Rattus norvegicusCalcium signaling pathwayAlzheimer's diseaseProtein bindingNeuroactive ligand-receptor interaction Molscript image for 1pb7A02 10
3.40.190.10.42 1cb6A04 Serine-type endopeptidase activityLactotransferrinSerine endopeptidases.Humoral immune responseHomo sapiens Molscript image for 1cb6A04 94
3.40.190.10.43 1pc3A01 Phosphate-binding protein pstS 1Two-component systemPhosphate transport system substrate-binding proteinABC transportersMycobacterium tuberculosis Molscript image for 1pc3A01 2
3.40.190.10.44 1ursB01 Maltose binding proteinAlicyclobacillus acidocaldarius subsp. acidocaldarius Molscript image for 1ursB01 5
3.40.190.10.45 2pvuA01 Geobacillus stearothermophilusArtJ Molscript image for 2pvuA01 12
3.40.190.10.46 3gzgA02 Molybdate transport system substrate-binding proteinMolybdate-binding periplasmic protein; permeaseXanthomonas axonopodis pv. citriABC transporters Molscript image for 3gzgA02 8
3.40.190.10.47 1anfA01 Maltose/maltodextrin transport system substrate-binding proteinMaltose-binding periplasmic proteinBacterial chemotaxisDisaccharide bindingMaltose transport Molscript image for 1anfA01 56
3.40.190.10.48 1twyA01 Two-component systemVibrio choleraePhosphate transport system substrate-binding proteinABC transporter, periplasmic substrate-binding proteinABC transporters Molscript image for 1twyA01 8
3.40.190.10.49 2p0sB01 ABC transporter, permease protein, putativeABC-2 type transport system permease proteinPorphyromonas gingivalis Molscript image for 2p0sB01 2
3.40.190.10.50 2nxoD01 Ubiquinone and other terpenoid-quinone biosynthesisPutative uncharacterized protein SCO4506Chorismate futalosine-lyase [EC:4.1.99.-]Streptomyces coelicolor Molscript image for 2nxoD01 4
3.40.190.10.51 1p99A02 Lactococcal lipoproteinD-methionine transport system substrate-binding proteinStaphylococcus aureus subsp. aureus Mu50ABC transporters Molscript image for 1p99A02 2
3.40.190.10.52 1anfA02 Maltose/maltodextrin transport system substrate-binding proteinMaltose-binding periplasmic proteinBacterial chemotaxisDisaccharide bindingMaltose transport Molscript image for 1anfA02 56
3.40.190.10.53 3cvgA02 Molscript image for 3cvgA02 4
3.40.190.10.54 2i6eA01 Deinococcus radioduransPutative uncharacterized protein Molscript image for 2i6eA01 8
3.40.190.10.55 2o1mA02 Bacillus subtilisL-cystine-binding protein tcyKPolar amino acid transport system substrate-binding protein Molscript image for 2o1mA02 2
3.40.190.10.56 2ozzA01 Shigella flexneriPutative uncharacterized protein yhfZ Molscript image for 2ozzA01 2
3.40.190.10.57 2pyyB01 Nostoc punctiforme PCC 73102Ionotropic glutamate receptor bacterial homologue Molscript image for 2pyyB01 3
3.40.190.10.58 1pdaA01 Hydroxymethylbilane synthase activityEscherichia coli K-12Metabolic pathwaysCytoplasmHydroxymethylbilane synthase. Molscript image for 1pdaA01 5
3.40.190.10.59 3thiA01 Paenibacillus thiaminolyticusThiamine pyridinylase.Thiaminase-1 Molscript image for 3thiA01 4
3.40.190.10.60 1dpeA02 Bacterial chemotaxisDipeptide transport system substrate-binding proteinDipeptide transporter activityEscherichia coli K-12Dipeptide transport Molscript image for 1dpeA02 5
3.40.190.10.61 1o63A01 Thermotoga maritimaATP phosphoribosyltransferaseATP phosphoribosyltransferase [EC:2.4.2.17]ATP phosphoribosyltransferase.Histidine metabolism Molscript image for 1o63A01 8
3.40.190.10.62 1eljA01 Pyrococcus furiosusMaltooligosaccharide transport system substrate-binding proteinABC transportersMaltotriose-binding protein Molscript image for 1eljA01 1
3.40.190.10.63 1ve4A02 Thermus thermophilus HB27ATP phosphoribosyltransferaseATP phosphoribosyltransferase [EC:2.4.2.17]ATP phosphoribosyltransferase.Histidine metabolism Molscript image for 1ve4A02 5
3.40.190.10.64 1uthB01 LysR-type regulatory proteinBurkholderia sp. DNT Molscript image for 1uthB01 8
3.40.190.10.65 2ieeA01 Bacillus subtilisProbable ABC transporter extracellular-binding protein yckBPolar amino acid transport system substrate-binding protein Molscript image for 2ieeA01 2
3.40.190.10.66 1nh8A01 ATP phosphoribosyltransferaseATP phosphoribosyltransferase [EC:2.4.2.17]ATP phosphoribosyltransferase.Histidine metabolismMetabolic pathways Molscript image for 1nh8A01 2
3.40.190.10.67 3fd3A01 Agrobacterium tumefaciens str. C58LysR family transcriptional regulator, chromosome initiation inhibitorTranscriptional regulator, LysR family Molscript image for 3fd3A01 1
3.40.190.10.68 1gtkA02 Hydroxymethylbilane synthase activityMetabolic pathwaysEscherichia coli K-12Hydroxymethylbilane synthase.Cytoplasm Molscript image for 1gtkA02 5
3.40.190.10.69 1cb6A01 Serine-type endopeptidase activityLactotransferrinHumoral immune responseHeparin bindingProtein binding Molscript image for 1cb6A01 32
3.40.190.10.70 3thiA02 Paenibacillus thiaminolyticusThiamine pyridinylase.Thiaminase-1 Molscript image for 3thiA02 4
3.40.190.10.71 1a99A02 Putrescine-importing ATPase activityPutrescine transportPutrescine-binding periplasmic proteinABC transportersEscherichia coli K-12 Molscript image for 1a99A02 4
3.40.190.10.72 3fd3A02 Agrobacterium tumefaciens str. C58LysR family transcriptional regulator, chromosome initiation inhibitorTranscriptional regulator, LysR family Molscript image for 3fd3A02 1
3.40.190.10.73 1eljA02 Pyrococcus furiosusMaltooligosaccharide transport system substrate-binding proteinABC transportersMaltotriose-binding protein Molscript image for 1eljA02 1
3.40.190.10.74 1ii5A02 Synechocystis sp. PCC 6803Slr1257 proteinPolar amino acid transport system substrate-binding protein Molscript image for 1ii5A02 3
3.40.190.10.75 2qsxA01 Vibrio parahaemolyticusPutative transcriptional regulator, LysR family Molscript image for 2qsxA01 2
3.40.190.10.76 1al3A01 Klebsiella pneumoniaeLysR family transcriptional regulator, cys regulon transcriptional activatorHTH-type transcriptional regulator cysB Molscript image for 1al3A01 5
3.40.190.10.77 1lstA02 Lysine-arginine-ornithine-binding periplasmic proteinSalmonella enterica subsp. enterica serovar TyphimuriumLysine/arginine/ornithine transport system substrate-binding proteinABC transporters Molscript image for 1lstA02 7
3.40.190.10.78 3c9hA01 Agrobacterium tumefaciens str. C58ABC transporter, substrate binding protein (Iron)ABC transportersIron(III) transport system substrate-binding protein Molscript image for 3c9hA01 2
3.40.190.10.79 1eu8A01 Pyrococcus furiosusMultiple sugar transport system substrate-binding proteinTrehalose/maltose binding protein Molscript image for 1eu8A01 1
3.40.190.10.80 2d3iA03 Gallus gallusOvotransferrin Molscript image for 2d3iA03 38
3.40.190.10.81 2o1mA01 Bacillus subtilisL-cystine-binding protein tcyKPolar amino acid transport system substrate-binding protein Molscript image for 2o1mA01 2
3.40.190.10.82 2esnA02 Probable transcriptional regulatorPseudomonas aeruginosa Molscript image for 2esnA02 4
3.40.190.10.83 2qsxB02 Vibrio parahaemolyticusPutative transcriptional regulator, LysR family Molscript image for 2qsxB02 2
3.40.190.10.84 1pc3A02 Phosphate-binding protein pstS 1Two-component systemPhosphate transport system substrate-binding proteinABC transportersMycobacterium tuberculosis Molscript image for 1pc3A02 2
3.40.190.10.85 2ql3A02 Rhodococcus jostii RHA1Probable transcriptional regulator, LysR family protein Molscript image for 2ql3A02 12
3.40.190.10.86 1h3dA01 Histidine biosynthetic processATP phosphoribosyltransferase activityATP phosphoribosyltransferaseATP phosphoribosyltransferase [EC:2.4.2.17]ATP phosphoribosyltransferase. Molscript image for 1h3dA01 2
3.40.190.10.87 3a09A01 AlgQ1Sphingomonas sp. Molscript image for 3a09A01 7
3.40.190.10.88 1wdnA01 Glutamine-binding periplasmic proteinGlutamine transport system substrate-binding proteinProtein bindingABC transportersEscherichia coli K-12 Molscript image for 1wdnA01 6
3.40.190.10.89 1ixcA03 LysR-type regulatory proteinCupriavidus necator Molscript image for 1ixcA03 6
3.40.190.10.90 2nxoA02 Putative uncharacterized protein SCO4506Ubiquinone and other terpenoid-quinone biosynthesisChorismate futalosine-lyase [EC:4.1.99.-]Streptomyces coelicolor Molscript image for 2nxoA02 4
3.40.190.10.91 1nh8A02 ATP phosphoribosyltransferaseATP phosphoribosyltransferase [EC:2.4.2.17]ATP phosphoribosyltransferase.Histidine metabolismMycobacterium tuberculosis Molscript image for 1nh8A02 2
3.40.190.10.92 2ql3A01 Rhodococcus jostii RHA1Probable transcriptional regulator, LysR family protein Molscript image for 2ql3A01 12
3.40.190.10.93 1i6aA01 LysR family transcriptional regulator, hydrogen peroxide-inducible genes activatorEscherichia coli K-12Hydrogen peroxide-inducible genes activator Molscript image for 1i6aA01 3
3.40.190.10.94 2esnA03 Probable transcriptional regulatorPseudomonas aeruginosa Molscript image for 2esnA03 4
3.40.190.10.95 1i6aA02 LysR family transcriptional regulator, hydrogen peroxide-inducible genes activatorEscherichia coli K-12Hydrogen peroxide-inducible genes activator Molscript image for 1i6aA02 3
3.40.190.10.96 1ixcA02 LysR-type regulatory proteinCupriavidus necator Molscript image for 1ixcA02 6
3.40.190.10.97 1uthA02 LysR-type regulatory proteinBurkholderia sp. DNT Molscript image for 1uthA02 8
3.40.190.10.98 2ieeA02 Bacillus subtilisProbable ABC transporter extracellular-binding protein yckBPolar amino acid transport system substrate-binding protein Molscript image for 2ieeA02 2
3.40.190.10.99 2i6eA02 Deinococcus radioduransPutative uncharacterized protein Molscript image for 2i6eA02 8
3.40.190.10.100 3cvgC01 Molscript image for 3cvgC01 1
3.40.190.10.101 1eu8A02 Pyrococcus furiosusMultiple sugar transport system substrate-binding proteinTrehalose/maltose binding protein Molscript image for 1eu8A02 1
3.40.190.10.102 1o63A02 Thermotoga maritimaATP phosphoribosyltransferaseATP phosphoribosyltransferase [EC:2.4.2.17]ATP phosphoribosyltransferase.Histidine metabolism Molscript image for 1o63A02 17
3.40.190.10.103 2qmwA01 Prephenate dehydratase [EC:4.2.1.51]Phenylalanine, tyrosine and tryptophan biosynthesisSimilar to chorismate mutaseStaphylococcus aureus subsp. aureus Mu50Metabolic pathways Molscript image for 2qmwA01 4
3.40.190.10.104 3fzvD02 Probable transcriptional regulatorPseudomonas aeruginosa Molscript image for 3fzvD02 4
3.40.190.10.105 2qmxA01 Prephenate dehydratase [EC:4.2.1.51]Chlorobaculum tepidumPhenylalanine, tyrosine and tryptophan biosynthesisPrephenate dehydratase.Metabolic pathways Molscript image for 2qmxA01 2
3.40.190.10.106 2ozzA02 Shigella flexneriPutative uncharacterized protein yhfZ Molscript image for 2ozzA02 2
3.40.190.10.107 2qmxA02 Prephenate dehydratase [EC:4.2.1.51]Chlorobaculum tepidumPhenylalanine, tyrosine and tryptophan biosynthesisPrephenate dehydratase.Metabolic pathways Molscript image for 2qmxA02 2
3.40.190.10.108 3fzvA03 Probable transcriptional regulatorPseudomonas aeruginosa Molscript image for 3fzvA03 4
3.40.190.10.109 2qmwA02 Prephenate dehydratase [EC:4.2.1.51]Phenylalanine, tyrosine and tryptophan biosynthesisSimilar to chorismate mutaseStaphylococcus aureus subsp. aureus Mu50Metabolic pathways Molscript image for 2qmwA02 4
3.40.190.10.110 3a09A02 AlgQ1Sphingomonas sp. Molscript image for 3a09A02 7

Close Structural Clusters 3.40.190.10 (< 5Å)

Summary of "distant" structural clusters found within this level of CATH.
Cluster ID Example Domain Domains in Cluster Structural Alignment (Core) Structural Alignment (Expanded)
00003.00040.00190.00010/SSG5/1 1potA02 2
00003.00040.00190.00010/SSG5/2 1jetA01 2
00003.00040.00190.00010/SSG5/3 1gtkA02 2
00003.00040.00190.00010/SSG5/4 1h3dA01 4
00003.00040.00190.00010/SSG5/5 2qsxA01 10
00003.00040.00190.00010/SSG5/6 2ieeA01 6
00003.00040.00190.00010/SSG5/7 1ii5A02 8
00003.00040.00190.00010/SSG5/8 1ixhA01 2
00003.00040.00190.00010/SSG5/9 1pc3A02 3
00003.00040.00190.00010/SSG5/10 2qmxA02 8
00003.00040.00190.00010/SSG5/11 1nnfA01 4
00003.00040.00190.00010/SSG5/12 1al3A01 7
00003.00040.00190.00010/SSG5/13 1xvxA01 5
00003.00040.00190.00010/SSG5/14 1xs5A01 3
00003.00040.00190.00010/SSG5/15 1pb7A01 2
00003.00040.00190.00010/SSG5/16 1sw5A01 2
00003.00040.00190.00010/SSG5/17 2nxoD01 2
00003.00040.00190.00010/SSG5/18 2nxoA02 2
00003.00040.00190.00010/SSG5/19 2qsxB02 2
00003.00040.00190.00010/SSG5/20 1eljA01 7
00003.00040.00190.00010/SSG5/21 1eu8A02 4
00003.00040.00190.00010/SSG5/22 3gzgA01 5
00003.00040.00190.00010/SSG5/23 2onsA02 3
00003.00040.00190.00010/SSG5/24 2d3iA03 6
00003.00040.00190.00010/SSG5/25 1ryoA02 2


Distant Structural Clusters 3.40.190.10 (< 9Å)

Summary of "distant" structural clusters found within this level of CATH.
Cluster ID Example Domain Domains in Cluster Structural Alignment (Core) Structural Alignment (Expanded)
00003.00040.00190.00010/SSGA9/1 1al3A01 8
00003.00040.00190.00010/SSGA9/2 1al3A02 7
00003.00040.00190.00010/SSGA9/3 1cb6A04 5
00003.00040.00190.00010/SSGA9/4 1h3dA01 2
00003.00040.00190.00010/SSGA9/5 1iejA01 4
00003.00040.00190.00010/SSGA9/6 3thiA02 2


Structural Comparisons for Non-redundant S35 Representatives of 3.40.190.10 ( entries)