S100 Family: 3.40.140.20.2.1.1.1

Representative domain: 1thzA03

Classification Lineage (3.40.140.20.2.1.1.1)

CATH Code	Level Description	Links
3	Alpha Beta
3.40	3-Layer(aba) Sandwich
3.40.140	Cytidine Deaminase; domain 2
3.40.140.20		Gene3D
3.40.140.20.2
3.40.140.20.2.1
3.40.140.20.2.1.1
3.40.140.20.2.1.1.1

Summary of Non-Redundant Representatives


-	-	-	-	-	-	-	-	18

Non-Redundant Representatives (18)
Functional Families
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What is a Non-Redundant Representative?

CATH is a tree-like organisation of nodes that begins with the class node (i.e. the first branch-point of the tree) and ends with the domain nodes (i.e. the leaves of the tree). Each node below the class have a parent that they belong to, e.g. the parent of the H level (Homologous superfamily) is the T (Topology). Additionally, each node above the domains have child nodes that belong to them, e.g. the child nodes of a given H (Homologous superfamily) level are the S35 families (domains clustered at > 35% sequence identity).

S100 Count Entries in S100 Family 3.40.140.20.2.1.1.1 (18)

CATH code	Domain ID	Keywords
3.40.140.20.2.1.1.1.1	1thzA03	Phosphoribosylaminoimidazolecarboxamide formyltransferase., protein homodimerization activity, Metabolic pathways, Purine metabolism, One carbon pool by folate, Gallus gallus, IMP cyclohydrolase., phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10], Bifunctional purine biosynthesis protein PURH
3.40.140.20.2.1.1.1.2	1thzB03	phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10], IMP cyclohydrolase., Bifunctional purine biosynthesis protein PURH, Gallus gallus, One carbon pool by folate, Purine metabolism, Metabolic pathways, protein homodimerization activity, Phosphoribosylaminoimidazolecarboxamide formyltransferase.
3.40.140.20.2.1.1.1.3	1m9nA03	Bifunctional purine biosynthesis protein PURH, IMP cyclohydrolase., phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10], Gallus gallus, Purine metabolism, One carbon pool by folate, protein homodimerization activity, Metabolic pathways, Phosphoribosylaminoimidazolecarboxamide formyltransferase.
3.40.140.20.2.1.1.1.4	1m9nB03	One carbon pool by folate, Purine metabolism, phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10], IMP cyclohydrolase., Bifunctional purine biosynthesis protein PURH, Gallus gallus, Phosphoribosylaminoimidazolecarboxamide formyltransferase., Metabolic pathways, protein homodimerization activity
3.40.140.20.2.1.1.1.5	2b1iA02	Phosphoribosylaminoimidazolecarboxamide formyltransferase., protein homodimerization activity, Metabolic pathways, Purine metabolism, One carbon pool by folate, Bifunctional purine biosynthesis protein PURH, IMP cyclohydrolase., phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10], Gallus gallus
3.40.140.20.2.1.1.1.6	2b1iB02	Metabolic pathways, protein homodimerization activity, Phosphoribosylaminoimidazolecarboxamide formyltransferase., Gallus gallus, phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10], IMP cyclohydrolase., Bifunctional purine biosynthesis protein PURH, One carbon pool by folate, Purine metabolism
3.40.140.20.2.1.1.1.7	2b1gA02	One carbon pool by folate, Purine metabolism, Gallus gallus, Bifunctional purine biosynthesis protein PURH, phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10], IMP cyclohydrolase., Phosphoribosylaminoimidazolecarboxamide formyltransferase., Metabolic pathways, protein homodimerization activity
3.40.140.20.2.1.1.1.8	2b1gB02	Purine metabolism, One carbon pool by folate, IMP cyclohydrolase., phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10], Bifunctional purine biosynthesis protein PURH, Gallus gallus, Phosphoribosylaminoimidazolecarboxamide formyltransferase., protein homodimerization activity, Metabolic pathways
3.40.140.20.2.1.1.1.9	2b1gC02	Metabolic pathways, protein homodimerization activity, Phosphoribosylaminoimidazolecarboxamide formyltransferase., Gallus gallus, phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10], IMP cyclohydrolase., Bifunctional purine biosynthesis protein PURH, One carbon pool by folate, Purine metabolism
3.40.140.20.2.1.1.1.10	2b1gD02	Phosphoribosylaminoimidazolecarboxamide formyltransferase., protein homodimerization activity, Metabolic pathways, Purine metabolism, One carbon pool by folate, Bifunctional purine biosynthesis protein PURH, IMP cyclohydrolase., phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10], Gallus gallus
3.40.140.20.2.1.1.1.11	1oz0A03	Bifunctional purine biosynthesis protein PURH, IMP cyclohydrolase., phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10], Gallus gallus, Purine metabolism, One carbon pool by folate, protein homodimerization activity, Metabolic pathways, Phosphoribosylaminoimidazolecarboxamide formyltransferase.
3.40.140.20.2.1.1.1.12	1oz0B03	phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10], IMP cyclohydrolase., Bifunctional purine biosynthesis protein PURH, Gallus gallus, One carbon pool by folate, Purine metabolism, Metabolic pathways, protein homodimerization activity, Phosphoribosylaminoimidazolecarboxamide formyltransferase.
3.40.140.20.2.1.1.1.13	2iu0A02	Phosphoribosylaminoimidazolecarboxamide formyltransferase., protein homodimerization activity, Metabolic pathways, Purine metabolism, One carbon pool by folate, Bifunctional purine biosynthesis protein PURH, IMP cyclohydrolase., phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10], Gallus gallus
3.40.140.20.2.1.1.1.14	2iu0B02	Phosphoribosylaminoimidazolecarboxamide formyltransferase., Metabolic pathways, protein homodimerization activity, One carbon pool by folate, Purine metabolism, Gallus gallus, phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10], IMP cyclohydrolase., Bifunctional purine biosynthesis protein PURH
3.40.140.20.2.1.1.1.15	2iu3A02	Gallus gallus, Bifunctional purine biosynthesis protein PURH, phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10], IMP cyclohydrolase., One carbon pool by folate, Purine metabolism, Metabolic pathways, protein homodimerization activity, Phosphoribosylaminoimidazolecarboxamide formyltransferase.
3.40.140.20.2.1.1.1.16	2iu3B02	protein homodimerization activity, Metabolic pathways, Phosphoribosylaminoimidazolecarboxamide formyltransferase., Bifunctional purine biosynthesis protein PURH, IMP cyclohydrolase., phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10], Gallus gallus, Purine metabolism, One carbon pool by folate
3.40.140.20.2.1.1.1.17	2b0wA02
3.40.140.20.2.1.1.1.18	2b0wB02

The information on Functional Families (FunFams) is currently being updated and will be released by the end of March 2012. The pages will include the following features:

Multiple alignments for each functional family
Representative structure for each functional with known catalytic and interface residues highlighted, along with conserved residues predicted by scorecons
Detailed functional information on diversity and conservation within Functional families
Multi-domain architectures

In the meantime, please find a summary of information on the FunFams and protein networks within this superfamily on the Gene3D pages:

http://gene3d.biochem.ucl.ac.uk/superfamily/?accession=3.40.140.20.2.1.1.1

What is a Non-Redundant Representative?

Why can't I have a multiple structural alignment of the whole superfamily?

The simple answer is that some of the larger superfamilies in CATH comprise relatives which are very structurally diverse, having different secondary structure embellishments. Attempting to provide a global alignment of all domains in the superfamily would result in poor quality alignments. As a result, structural alignments in CATH are generated by first clustering together the structures that have at least some recognisable structural similarity using a normalised RMSD score (SIMAX = RMSDxNumber of residues in the largest domain/number of aligned residues) less than a given cutoff.

What is an Close Structural Cluster?

A Close Structural Cluster describes a cluster of two or more CATH domains that have been grouped together due to their close structural similarity (SIMAX score < 5Å where SIMAX = RMSD x Number of residues in the larger domain/number of aligned residues).

What is a Distant Structural Cluster?

A Distant Structural Cluster describes a cluster of two or CATH domains that have been grouped together with a more relaxed structural similarity threshold to investigate more distant evolutionary similarities (SIMAX score < 5Å where SIMAX = RMSD x Number of residues in the larger domain/number of aligned residues).

What is a Structural Neighbour?

The term "structural neighbour" is used here to describe two CATH domains that share a degree of structural similarity. The SSAP algorithm is used to calculate this similarity and works by generating a structure-based pairwise alignment of the two domains then scoring this alignment using a RMSD score which has been normalised by the length of the larger domain divided by the number of aligned residues (SIMAX).

S100 Family: 3.40.140.20.2.1.1.1

Classification Lineage (3.40.140.20.2.1.1.1)

Summary of Non-Redundant Representatives

What is a Non-Redundant Representative?

S100 Count Entries in S100 Family 3.40.140.20.2.1.1.1 (18)

What is a Non-Redundant Representative?

Why can't I have a multiple structural alignment of the whole superfamily?

What is an Close Structural Cluster?

What is a Distant Structural Cluster?

What is a Structural Neighbour?

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