# STOCKHOLM 1.0
#=GF ID 3.90.1150.50/FF/000001
#=GF DE Transcription-repair-coupling factor
#=GF AC 3.90.1150.50/FF/000001
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 46.359
#=GS 2eyqB07/1004-1151     AC P30958
#=GS 2eyqB07/1004-1151     OS Escherichia coli K-12
#=GS 2eyqB07/1004-1151     DE Transcription-repair-coupling factor
#=GS 2eyqB07/1004-1151     DR CATH; 2eyq; B:1001-1147; 
#=GS 2eyqB07/1004-1151     DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; 
#=GS 2eyqB07/1004-1151     DR GO; GO:0000716; GO:0003677; GO:0005515; GO:0005829; GO:0006281; GO:0006283; GO:0006355; GO:0006974; GO:0015616; GO:0043175; 
#=GS Q9KQW2/1006-1152      AC Q9KQW2
#=GS Q9KQW2/1006-1152      OS Vibrio cholerae O1 biovar El Tor str. N16961
#=GS Q9KQW2/1006-1152      DE Transcription-repair-coupling factor
#=GS Q9KQW2/1006-1152      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio cholerae; 
#=GS Q9KQW2/1006-1152      DR GO; GO:0003690; GO:0005524; GO:0006281; GO:0016887; 
#=GS 2eyqA07/1004-1151     AC P30958
#=GS 2eyqA07/1004-1151     OS Escherichia coli K-12
#=GS 2eyqA07/1004-1151     DE Transcription-repair-coupling factor
#=GS 2eyqA07/1004-1151     DR CATH; 2eyq; A:1001-1147; 
#=GS 2eyqA07/1004-1151     DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; 
#=GS 2eyqA07/1004-1151     DR GO; GO:0000716; GO:0003677; GO:0005515; GO:0005829; GO:0006281; GO:0006283; GO:0006355; GO:0006974; GO:0015616; GO:0043175; 
#=GS P30958/1001-1148      AC P30958
#=GS P30958/1001-1148      OS Escherichia coli K-12
#=GS P30958/1001-1148      DE Transcription-repair-coupling factor
#=GS P30958/1001-1148      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; 
#=GS P30958/1001-1148      DR GO; GO:0000716; GO:0003677; GO:0005515; GO:0005829; GO:0006281; GO:0006283; GO:0006355; GO:0006974; GO:0015616; GO:0043175; 
#=GS Q32EX4/1001-1148      AC Q32EX4
#=GS Q32EX4/1001-1148      OS Shigella dysenteriae Sd197
#=GS Q32EX4/1001-1148      DE Transcription-repair-coupling factor
#=GS Q32EX4/1001-1148      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella; Shigella dysenteriae; 
#=GS A0A3Q8DIJ5/1001-1148  AC A0A3Q8DIJ5
#=GS A0A3Q8DIJ5/1001-1148  OS Citrobacter sp. CFNIH10
#=GS A0A3Q8DIJ5/1001-1148  DE Transcription-repair-coupling factor
#=GS A0A3Q8DIJ5/1001-1148  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Citrobacter; Citrobacter sp. CFNIH10; 
#=GS A0A085AH06/1001-1148  AC A0A085AH06
#=GS A0A085AH06/1001-1148  OS Trabulsiella guamensis ATCC 49490
#=GS A0A085AH06/1001-1148  DE Transcription-repair-coupling factor
#=GS A0A085AH06/1001-1148  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Trabulsiella; Trabulsiella guamensis; 
#=GS A0A236LVU8/1001-1148  AC A0A236LVU8
#=GS A0A236LVU8/1001-1148  OS Shigella boydii
#=GS A0A236LVU8/1001-1148  DE Transcription-repair-coupling factor
#=GS A0A236LVU8/1001-1148  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella; Shigella boydii; 
#=GS A0A236V3U4/1001-1148  AC A0A236V3U4
#=GS A0A236V3U4/1001-1148  OS Shigella sonnei
#=GS A0A236V3U4/1001-1148  DE Transcription-repair-coupling factor
#=GS A0A236V3U4/1001-1148  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella; Shigella sonnei; 
#=GS A0A3R9E4G5/1001-1148  AC A0A3R9E4G5
#=GS A0A3R9E4G5/1001-1148  OS Citrobacter amalonaticus
#=GS A0A3R9E4G5/1001-1148  DE Transcription-repair-coupling factor
#=GS A0A3R9E4G5/1001-1148  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Citrobacter; Citrobacter amalonaticus; 
#=GS A0A0H2UYQ3/1001-1148  AC A0A0H2UYQ3
#=GS A0A0H2UYQ3/1001-1148  OS Shigella flexneri
#=GS A0A0H2UYQ3/1001-1148  DE Transcription-repair-coupling factor
#=GS A0A0H2UYQ3/1001-1148  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella; Shigella flexneri; 
#=GS D0IKN9/1006-1152      AC D0IKN9
#=GS D0IKN9/1006-1152      OS Vibrio sp. RC586
#=GS D0IKN9/1006-1152      DE Transcription-repair-coupling factor
#=GS D0IKN9/1006-1152      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio sp. RC586; 
#=GS H4UHG5/1001-1148      AC H4UHG5
#=GS H4UHG5/1001-1148      OS Escherichia coli DEC6A
#=GS H4UHG5/1001-1148      DE Transcription-repair-coupling factor
#=GS H4UHG5/1001-1148      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; 
#=GS A0A069XMM8/1001-1148  AC A0A069XMM8
#=GS A0A069XMM8/1001-1148  OS Escherichia coli 3-373-03_S4_C2
#=GS A0A069XMM8/1001-1148  DE Transcription-repair-coupling factor
#=GS A0A069XMM8/1001-1148  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; 
#=GS A0A024L3Y3/1001-1148  AC A0A024L3Y3
#=GS A0A024L3Y3/1001-1148  OS Escherichia coli
#=GS A0A024L3Y3/1001-1148  DE Transcription-repair-coupling factor
#=GS A0A024L3Y3/1001-1148  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; 
#=GS E3PJS7/1001-1148      AC E3PJS7
#=GS E3PJS7/1001-1148      OS Escherichia coli ETEC H10407
#=GS E3PJS7/1001-1148      DE Transcription-repair-coupling factor
#=GS E3PJS7/1001-1148      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; 
#=GS A0A0H3JFE1/1017-1164  AC A0A0H3JFE1
#=GS A0A0H3JFE1/1017-1164  OS Escherichia coli O157:H7
#=GS A0A0H3JFE1/1017-1164  DE Transcription-repair-coupling factor
#=GS A0A0H3JFE1/1017-1164  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; 
#=GS A0A0K3RIT6/1017-1164  AC A0A0K3RIT6
#=GS A0A0K3RIT6/1017-1164  OS Escherichia coli
#=GS A0A0K3RIT6/1017-1164  DE Transcription-repair-coupling factor
#=GS A0A0K3RIT6/1017-1164  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; 
#=GS E2XFI3/1001-1148      AC E2XFI3
#=GS E2XFI3/1001-1148      OS Shigella dysenteriae 1617
#=GS E2XFI3/1001-1148      DE Transcription-repair-coupling factor
#=GS E2XFI3/1001-1148      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella; Shigella dysenteriae; 
#=GS A0A454A358/1017-1164  AC A0A454A358
#=GS A0A454A358/1017-1164  OS Escherichia coli 536
#=GS A0A454A358/1017-1164  DE Transcription-repair-coupling factor
#=GS A0A454A358/1017-1164  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; 
#=GS A0A449CBJ1/1017-1164  AC A0A449CBJ1
#=GS A0A449CBJ1/1017-1164  OS Escherichia coli
#=GS A0A449CBJ1/1017-1164  DE Transcription-repair-coupling factor
#=GS A0A449CBJ1/1017-1164  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; 
#=GS A0A0H3AKP6/1006-1152  AC A0A0H3AKP6
#=GS A0A0H3AKP6/1006-1152  OS Vibrio cholerae O395
#=GS A0A0H3AKP6/1006-1152  DE Transcription-repair-coupling factor
#=GS A0A0H3AKP6/1006-1152  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio cholerae; 
#=GS A0A0X1KXU8/1006-1152  AC A0A0X1KXU8
#=GS A0A0X1KXU8/1006-1152  OS Vibrio cholerae MO10
#=GS A0A0X1KXU8/1006-1152  DE Transcription-repair-coupling factor
#=GS A0A0X1KXU8/1006-1152  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio cholerae; 
#=GS A0A0H7AQ25/1006-1152  AC A0A0H7AQ25
#=GS A0A0H7AQ25/1006-1152  OS Vibrio cholerae
#=GS A0A0H7AQ25/1006-1152  DE Transcription-repair-coupling factor
#=GS A0A0H7AQ25/1006-1152  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio cholerae; 
#=GS C3LNJ0/1006-1152      AC C3LNJ0
#=GS C3LNJ0/1006-1152      OS Vibrio cholerae M66-2
#=GS C3LNJ0/1006-1152      DE Transcription-repair-coupling factor
#=GS C3LNJ0/1006-1152      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio cholerae; 
#=GS A0A0K9UZJ0/1006-1152  AC A0A0K9UZJ0
#=GS A0A0K9UZJ0/1006-1152  OS Vibrio cholerae 2740-80
#=GS A0A0K9UZJ0/1006-1152  DE Transcription-repair-coupling factor
#=GS A0A0K9UZJ0/1006-1152  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio cholerae; 
#=GF SQ 26
2eyqB07/1004-1151             QTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELEENAIA
Q9KQW2/1006-1152              QTEVEMRLPALLPEEYIPDINTRLSMYKQIASVASKDELAELKVELIDRFGKLPDAALNLLAIAELKLNAMRLKVRKIEAHERGGYVEFYPNADINPVFLVKLLQSQPKLLAMDGPTKLKFTLPLVERSARIQFVADMLKNFQQNVL-
2eyqA07/1004-1151             QTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELEENAIA
P30958/1001-1148              QTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELEENAIA
Q32EX4/1001-1148              QTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELEENTIA
A0A3Q8DIJ5/1001-1148          QTEVELRMPSLLPDDYIPDVNTRLSFYKRIASAKSENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGTIEFAEKNHVNPGWLIGLLQKQPQHFRLDGPTRLKFIQDLTERKTRMDWVRQFMQQLEENAVA
A0A085AH06/1001-1148          QTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKSENALEELKVELIDRFGLLPDAARNLLDIARLRQQAQKLGIRKLEGNEKGGVIEFNEKNHVNPAWLIGLLQKQPQHFRLDGPTRLRFMQDLSERKTRMDWVRQFMQQLEENAVA
A0A236LVU8/1001-1148          QTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELEENAIA
A0A236V3U4/1001-1148          QTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELEENAIA
A0A3R9E4G5/1001-1148          QTEVELRMPSLLPDDYIPDVNTRLSFYKRIASAKSENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGTIEFAEKNHVNPGWLIGLLQKQPQHFRLDGPTRLKFIQDLTERKTRMDWVRQFMQQLEENAVA
A0A0H2UYQ3/1001-1148          QTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELEENAIA
D0IKN9/1006-1152              QTEVEMRLPALLPDDYIPDINTRLSMYKQIASVASEDELVELKVELIDRFGKLPDAALNLLAIAELKLSAMRLKVRKIEAHERGGYIEFYPNADINPLFLVKLLQSQPKQFAMDGPTKFKFTLPLVERGARIQFVADILNNFQQNVL-
H4UHG5/1001-1148              QTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELEENAIA
A0A069XMM8/1001-1148          QTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELEENAIA
A0A024L3Y3/1001-1148          QTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELEENAIA
E3PJS7/1001-1148              QTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELEENAIA
A0A0H3JFE1/1017-1164          QTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELEENAIA
A0A0K3RIT6/1017-1164          QTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELEENAIA
E2XFI3/1001-1148              QTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELEENTIA
A0A454A358/1017-1164          QTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELEENAIA
A0A449CBJ1/1017-1164          QTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELEENAIA
A0A0H3AKP6/1006-1152          QTEVEMRLPALLPEEYIPDINTRLSMYKQIASVASKDELAELKVELIDRFGKLPDAALNLLAIAELKLNAMRLKVRKIEAHERGGYVEFYPNADINPVFLVKLLQSQPKLLAMDGPTKLKFTLPLVERSARIQFVADMLKNFQQNVL-
A0A0X1KXU8/1006-1152          QTEVEMRLPALLPEEYIPDINTRLSMYKQIASVASKDELAELKVELIDRFGKLPDAALNLLAIAELKLNAMRLKVRKIEAHERGGYVEFYPNADINPVFLVKLLQSQPKLLAMDGPTKLKFTLPLVERSARIQFVADMLKNFQQNVL-
A0A0H7AQ25/1006-1152          QTEVEMRLPALLPEEYIPDINTRLSMYKQIASVASKDELAELKVELIDRFGKLPDAALNLLAIAELKLNAMRLKVRKIEAHERGGYVEFYPNADINPVFLVKLLQSQPKLLAMDGPTKLKFTLPLVERSARIQFVADMLKNFQQNVL-
C3LNJ0/1006-1152              QTEVEMRLPALLPEEYIPDINTRLSMYKQIASVASKDELAELKVELIDRFGKLPDAALNLLAIAELKLNAMRLKVRKIEAHERGGYVEFYPNADINPVFLVKLLQSQPKLLAMDGPTKLKFTLPLVERSARIQFVADMLKNFQQNVL-
A0A0K9UZJ0/1006-1152          QTEVEMRLPALLPEEYIPDINTRLSMYKQIASVASKDELAELKVELIDRFGKLPDAALNLLAIAELKLNAMRLKVRKIEAHERGGYVEFYPNADINPVFLVKLLQSQPKLLAMDGPTKLKFTLPLVERSARIQFVADMLKNFQQNVL-
#=GC scorecons                9999969696999777999799999599699965666895969999999994999694699599597559579579969669799479945655799559759995996555699997889655959956986595556656669562
#=GC scorecons_70             *********_***************_******____***_***********_***_*__**_**_**__*_**_*****__****_***_____***__**_***_***___*********___*_**_***__*___*__****___
#=GC scorecons_80             *****_*_*_***__****_*****_**_***_____**_*_*********_***_*__**_**_*___*__*__**_*__*_**__**______**__*__***_**_____****_***___*_**__**__*_________*___
#=GC scorecons_90             *****_*_*_***___***_*****_**_***_____**_*_*********_***_*__**_**_*___*__*__**_*__*_**__**______**__*__***_**_____****_***___*_**__**__*_________*___
//