# STOCKHOLM 1.0
#=GF ID 3.40.50.11140/FF/000001
#=GF DE Transcription-repair-coupling factor
#=GF AC 3.40.50.11140/FF/000001
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 43.777
#=GS 3hjhA03/354-450     AC P30958
#=GS 3hjhA03/354-450     OS Escherichia coli K-12
#=GS 3hjhA03/354-450     DE Transcription-repair-coupling factor
#=GS 3hjhA03/354-450     DR CATH; 3hjh; A:354-450; 
#=GS 3hjhA03/354-450     DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; 
#=GS 3hjhA03/354-450     DR GO; GO:0000716; GO:0003677; GO:0005515; GO:0005829; GO:0006281; GO:0006283; GO:0006355; GO:0006974; GO:0015616; GO:0043175; 
#=GS Q9KQW2/355-453      AC Q9KQW2
#=GS Q9KQW2/355-453      OS Vibrio cholerae O1 biovar El Tor str. N16961
#=GS Q9KQW2/355-453      DE Transcription-repair-coupling factor
#=GS Q9KQW2/355-453      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio cholerae; 
#=GS Q9KQW2/355-453      DR GO; GO:0003690; GO:0005524; GO:0006281; GO:0016887; 
#=GS 2eyqB03/357-455     AC P30958
#=GS 2eyqB03/357-455     OS Escherichia coli K-12
#=GS 2eyqB03/357-455     DE Transcription-repair-coupling factor
#=GS 2eyqB03/357-455     DR CATH; 2eyq; B:354-452; 
#=GS 2eyqB03/357-455     DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; 
#=GS 2eyqB03/357-455     DR GO; GO:0000716; GO:0003677; GO:0005515; GO:0005829; GO:0006281; GO:0006283; GO:0006355; GO:0006974; GO:0015616; GO:0043175; 
#=GS 2eyqA03/357-455     AC P30958
#=GS 2eyqA03/357-455     OS Escherichia coli K-12
#=GS 2eyqA03/357-455     DE Transcription-repair-coupling factor
#=GS 2eyqA03/357-455     DR CATH; 2eyq; A:354-452; 
#=GS 2eyqA03/357-455     DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; 
#=GS 2eyqA03/357-455     DR GO; GO:0000716; GO:0003677; GO:0005515; GO:0005829; GO:0006281; GO:0006283; GO:0006355; GO:0006974; GO:0015616; GO:0043175; 
#=GS P30958/354-450      AC P30958
#=GS P30958/354-450      OS Escherichia coli K-12
#=GS P30958/354-450      DE Transcription-repair-coupling factor
#=GS P30958/354-450      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; 
#=GS P30958/354-450      DR GO; GO:0000716; GO:0003677; GO:0005515; GO:0005829; GO:0006281; GO:0006283; GO:0006355; GO:0006974; GO:0015616; GO:0043175; 
#=GS Q32EX4/354-450      AC Q32EX4
#=GS Q32EX4/354-450      OS Shigella dysenteriae Sd197
#=GS Q32EX4/354-450      DE Transcription-repair-coupling factor
#=GS Q32EX4/354-450      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella; Shigella dysenteriae; 
#=GS D0IKN9/355-453      AC D0IKN9
#=GS D0IKN9/355-453      OS Vibrio sp. RC586
#=GS D0IKN9/355-453      DE Transcription-repair-coupling factor
#=GS D0IKN9/355-453      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio sp. RC586; 
#=GS A0A236LVU8/354-450  AC A0A236LVU8
#=GS A0A236LVU8/354-450  OS Shigella boydii
#=GS A0A236LVU8/354-450  DE Transcription-repair-coupling factor
#=GS A0A236LVU8/354-450  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella; Shigella boydii; 
#=GS A0A236V3U4/354-450  AC A0A236V3U4
#=GS A0A236V3U4/354-450  OS Shigella sonnei
#=GS A0A236V3U4/354-450  DE Transcription-repair-coupling factor
#=GS A0A236V3U4/354-450  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella; Shigella sonnei; 
#=GS A0A0H2UYQ3/354-450  AC A0A0H2UYQ3
#=GS A0A0H2UYQ3/354-450  OS Shigella flexneri
#=GS A0A0H2UYQ3/354-450  DE Transcription-repair-coupling factor
#=GS A0A0H2UYQ3/354-450  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella; Shigella flexneri; 
#=GS A0A0H3AKP6/355-453  AC A0A0H3AKP6
#=GS A0A0H3AKP6/355-453  OS Vibrio cholerae O395
#=GS A0A0H3AKP6/355-453  DE Transcription-repair-coupling factor
#=GS A0A0H3AKP6/355-453  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio cholerae; 
#=GS A0A0X1KXU8/355-453  AC A0A0X1KXU8
#=GS A0A0X1KXU8/355-453  OS Vibrio cholerae MO10
#=GS A0A0X1KXU8/355-453  DE Transcription-repair-coupling factor
#=GS A0A0X1KXU8/355-453  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio cholerae; 
#=GS A0A0H7AQ25/355-453  AC A0A0H7AQ25
#=GS A0A0H7AQ25/355-453  OS Vibrio cholerae
#=GS A0A0H7AQ25/355-453  DE Transcription-repair-coupling factor
#=GS A0A0H7AQ25/355-453  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio cholerae; 
#=GS C3LNJ0/355-453      AC C3LNJ0
#=GS C3LNJ0/355-453      OS Vibrio cholerae M66-2
#=GS C3LNJ0/355-453      DE Transcription-repair-coupling factor
#=GS C3LNJ0/355-453      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio cholerae; 
#=GS A0A0K9UZJ0/355-453  AC A0A0K9UZJ0
#=GS A0A0K9UZJ0/355-453  OS Vibrio cholerae 2740-80
#=GS A0A0K9UZJ0/355-453  DE Transcription-repair-coupling factor
#=GS A0A0K9UZJ0/355-453  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio cholerae; 
#=GS A0A069XMM8/354-450  AC A0A069XMM8
#=GS A0A069XMM8/354-450  OS Escherichia coli 3-373-03_S4_C2
#=GS A0A069XMM8/354-450  DE Transcription-repair-coupling factor
#=GS A0A069XMM8/354-450  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; 
#=GS H4UHG5/354-450      AC H4UHG5
#=GS H4UHG5/354-450      OS Escherichia coli DEC6A
#=GS H4UHG5/354-450      DE Transcription-repair-coupling factor
#=GS H4UHG5/354-450      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; 
#=GS A0A024L3Y3/354-450  AC A0A024L3Y3
#=GS A0A024L3Y3/354-450  OS Escherichia coli
#=GS A0A024L3Y3/354-450  DE Transcription-repair-coupling factor
#=GS A0A024L3Y3/354-450  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; 
#=GS E3PJS7/354-450      AC E3PJS7
#=GS E3PJS7/354-450      OS Escherichia coli ETEC H10407
#=GS E3PJS7/354-450      DE Transcription-repair-coupling factor
#=GS E3PJS7/354-450      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; 
#=GS A0A0H3JFE1/370-466  AC A0A0H3JFE1
#=GS A0A0H3JFE1/370-466  OS Escherichia coli O157:H7
#=GS A0A0H3JFE1/370-466  DE Transcription-repair-coupling factor
#=GS A0A0H3JFE1/370-466  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; 
#=GS A0A0K3RIT6/370-466  AC A0A0K3RIT6
#=GS A0A0K3RIT6/370-466  OS Escherichia coli
#=GS A0A0K3RIT6/370-466  DE Transcription-repair-coupling factor
#=GS A0A0K3RIT6/370-466  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; 
#=GS E2XFI3/354-450      AC E2XFI3
#=GS E2XFI3/354-450      OS Shigella dysenteriae 1617
#=GS E2XFI3/354-450      DE Transcription-repair-coupling factor
#=GS E2XFI3/354-450      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella; Shigella dysenteriae; 
#=GS A0A454A358/370-466  AC A0A454A358
#=GS A0A454A358/370-466  OS Escherichia coli 536
#=GS A0A454A358/370-466  DE Transcription-repair-coupling factor
#=GS A0A454A358/370-466  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; 
#=GS A0A449CBJ1/370-466  AC A0A449CBJ1
#=GS A0A449CBJ1/370-466  OS Escherichia coli
#=GS A0A449CBJ1/370-466  DE Transcription-repair-coupling factor
#=GS A0A449CBJ1/370-466  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; 
#=GF SQ 24
3hjhA03/354-450             GFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGR--YLMIGAAEHGFVDTVRNLALICESDLL--
Q9KQW2/355-453              QVQPLPVLAVEHQNKEPLAALRQFSEQFTGKIIFSVESEGRREALLELLQRIKLRPQSQNDFSLACQQTEKYSLVLGSAERGFIYGDNQVALICESDLL--
2eyqB03/357-455             GFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGR--YLMIGAAEHGFVDTVRNLALICESDLLGE
2eyqA03/357-455             GFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGR--YLMIGAAEHGFVDTVRNLALICESDLLGE
P30958/354-450              GFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGR--YLMIGAAEHGFVDTVRNLALICESDLL--
Q32EX4/354-450              GFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGR--YLMIGAAEHGFVDKVRNLALICESDLL--
D0IKN9/355-453              QVQPLPILAVEHQNKEPLAALRQFSEQFVGKIIFSVESEGRREALLELLQRIKLRPQSQSEFSIACQQAEKFSLVLGAAERGFIYGDNQIALICESDLL--
A0A236LVU8/354-450          GFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGR--YLMIGAAEHGFVDTVRNLALICESDLL--
A0A236V3U4/354-450          GFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGR--YLMIGAAEHGFVDTVRNLALICESDLL--
A0A0H2UYQ3/354-450          GFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGR--YLMIGAAEHGFVDKARNLALICESDLL--
A0A0H3AKP6/355-453          QVQPLPVLAVEHQNKEPLAALRQFSEQFTGKIIFSVESEGRREALLELLQRIKLRPQSQNDFSLACQQTEKYSLVLGSAERGFIYGDNQVALICESDLL--
A0A0X1KXU8/355-453          QVQPLPVLAVEHQNKEPLAALRQFSEQFTGKIIFSVESEGRREALLELLQRIKLRPQSQNDFSLACQQTEKYSLVLGSAERGFIYGDNQVALICESDLL--
A0A0H7AQ25/355-453          QVQPLPVLAVEHQNKEPLAALRQFSEQFTGKIIFSVESEGRREALLELLQRIKLRPQSQNDFSLACQQTEKYSLVLGSAERGFIYGDNQVALICESDLL--
C3LNJ0/355-453              QVQPLPVLAVEHQNKEPLAALRQFSEQFTGKIIFSVESEGRREALLELLQRIKLRPQSQNDFSLACQQTEKYSLVLGSAERGFIYGDNQVALICESDLL--
A0A0K9UZJ0/355-453          QVQPLPVLAVEHQNKEPLAALRQFSEQFTGKIIFSVESEGRREALLELLQRIKLRPQSQNDFSLACQQTEKYSLVLGSAERGFIYGDNQVALICESDLL--
A0A069XMM8/354-450          GFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGR--YLMIGAAEHGFVDTVRNLALICESDLL--
H4UHG5/354-450              GFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGR--YLMIGAAEHGFVDTVRNLALICESDLL--
A0A024L3Y3/354-450          GFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGR--YLMIGAAEHGFVDTVRNLALICESDLL--
E3PJS7/354-450              GFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGR--YLMIGAAEHGFVDTVRNLALICESDLL--
A0A0H3JFE1/370-466          GFQKLPDLAVQAQQKAPLDALRKFLESFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGR--YLMIGAAEHGFVDTVRNLALICESDLL--
A0A0K3RIT6/370-466          GFQKLPDLAVQAQQKAPLDALRKFLESFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGR--YLMIGAAEHGFVDTVRNLALICESDLL--
E2XFI3/354-450              GFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGR--YLMIGAAEHGFVDKVRNLALICESDLL--
A0A454A358/370-466          GFQKLPDLAIQAQQKAPLDALRKFLESFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGR--YLMIGAAEHGFVDTVRNLALICESDLL--
A0A449CBJ1/370-466          GFQKLPDLAIQAQQKAPLDALRKFLESFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGR--YLMIGAAEHGFVDTVRNLALICESDLL--
#=GC scorecons              55959949986595959959996959495957799999999999949995999659954456549656551159669699699755455699999999900
#=GC scorecons_70           __*_**_****_*_*_**_*****_*_*_*_**************_***_****_**____*__*__*_____****_******______*********__
#=GC scorecons_80           __*_**_***__*_*_**_***_*_*_*_*___************_***_***__**_______*________*__*_**_**_______*********__
#=GC scorecons_90           __*_**_***__*_*_**_***_*_*_*_*___************_***_***__**_______*________*__*_**_**_______*********__
//