# STOCKHOLM 1.0 #=GF ID 2.40.290.30/FF/000002 #=GF DE Mediator of RNA polymerase II transcription subunit #=GF AC 2.40.290.30/FF/000002 #=GF TP FunFam #=GF DR CATH: v4.3 #=GF DR DOPS: 75.629 #=GS Q9VDR1/514-684 AC Q9VDR1 #=GS Q9VDR1/514-684 OS Drosophila melanogaster #=GS Q9VDR1/514-684 DE Mediator of RNA polymerase II transcription subunit 25 #=GS Q9VDR1/514-684 DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila melanogaster; #=GS Q9VDR1/514-684 DR GO; GO:0003712; GO:0005654; GO:0006357; GO:0006963; GO:0007399; GO:0016592; #=GS Q9VCB1/36-194 AC Q9VCB1 #=GS Q9VCB1/36-194 OS Drosophila melanogaster #=GS Q9VCB1/36-194 DE Protein PTOV1 homolog #=GS Q9VCB1/36-194 DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila melanogaster; #=GS D2A196/442-606 AC D2A196 #=GS D2A196/442-606 OS Tribolium castaneum #=GS D2A196/442-606 DE Uncharacterized protein #=GS D2A196/442-606 DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga; Cucujiformia; Tenebrionoidea; Tenebrionidae; Tribolium; Tribolium castaneum; #=GS E9H6X5/370-530 AC E9H6X5 #=GS E9H6X5/370-530 OS Daphnia pulex #=GS E9H6X5/370-530 DE Uncharacterized protein #=GS E9H6X5/370-530 DR ORG; Eukaryota; Metazoa; Arthropoda; Crustacea; Branchiopoda; Phyllopoda; Diplostraca; Cladocera; Anomopoda; Daphniidae; Daphnia; Daphnia pulex; #=GS A0A164ZK13/588-750 AC A0A164ZK13 #=GS A0A164ZK13/588-750 OS Daphnia magna #=GS A0A164ZK13/588-750 DE Uncharacterized protein #=GS A0A164ZK13/588-750 DR ORG; Eukaryota; Metazoa; Arthropoda; Crustacea; Branchiopoda; Phyllopoda; Diplostraca; Cladocera; Anomopoda; Daphniidae; Daphnia; Daphnia magna; #=GS B4HGK4/35-192 AC B4HGK4 #=GS B4HGK4/35-192 OS Drosophila sechellia #=GS B4HGK4/35-192 DE GM26574 #=GS B4HGK4/35-192 DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila sechellia; #=GS B4QT26/37-196 AC B4QT26 #=GS B4QT26/37-196 OS Drosophila simulans #=GS B4QT26/37-196 DE GD21078 #=GS B4QT26/37-196 DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila simulans; #=GS B4ILJ5/507-677 AC B4ILJ5 #=GS B4ILJ5/507-677 OS Drosophila sechellia #=GS B4ILJ5/507-677 DE GM17687 #=GS B4ILJ5/507-677 DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila sechellia; #=GS B4QSR4/396-569 AC B4QSR4 #=GS B4QSR4/396-569 OS Drosophila simulans #=GS B4QSR4/396-569 DE GD19330 #=GS B4QSR4/396-569 DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila simulans; #=GS B3M0J9/518-691 AC B3M0J9 #=GS B3M0J9/518-691 OS Drosophila ananassae #=GS B3M0J9/518-691 DE Uncharacterized protein #=GS B3M0J9/518-691 DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; ananassae subgroup; Drosophila ananassae; #=GS B4G3Z4/504-673 AC B4G3Z4 #=GS B4G3Z4/504-673 OS Drosophila persimilis #=GS B4G3Z4/504-673 DE GL23418 #=GS B4G3Z4/504-673 DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; obscura group; pseudoobscura subgroup; Drosophila persimilis; #=GS B5DVL8/501-670 AC B5DVL8 #=GS B5DVL8/501-670 OS Drosophila pseudoobscura pseudoobscura #=GS B5DVL8/501-670 DE Uncharacterized protein #=GS B5DVL8/501-670 DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; obscura group; pseudoobscura subgroup; Drosophila pseudoobscura; Drosophila pseudoobscura pseudoobscura; #=GS A0A3B0JK08/512-681 AC A0A3B0JK08 #=GS A0A3B0JK08/512-681 OS Drosophila guanche #=GS A0A3B0JK08/512-681 DE Blast:Mediator of RNA polymerase II transcription subunit 25 #=GS A0A3B0JK08/512-681 DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; obscura group; obscura subgroup; Drosophila guanche; #=GS A0A1W4W868/510-681 AC A0A1W4W868 #=GS A0A1W4W868/510-681 OS Drosophila ficusphila #=GS A0A1W4W868/510-681 DE mediator of RNA polymerase II transcription subunit 25 #=GS A0A1W4W868/510-681 DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; ficusphila subgroup; Drosophila ficusphila; #=GS B3NZ28/505-675 AC B3NZ28 #=GS B3NZ28/505-675 OS Drosophila erecta #=GS B3NZ28/505-675 DE GG23647 #=GS B3NZ28/505-675 DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila erecta; #=GS B4IV08/130-299 AC B4IV08 #=GS B4IV08/130-299 OS Drosophila yakuba #=GS B4IV08/130-299 DE Uncharacterized protein #=GS B4IV08/130-299 DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila yakuba; #=GS B4PP49/509-679 AC B4PP49 #=GS B4PP49/509-679 OS Drosophila yakuba #=GS B4PP49/509-679 DE Uncharacterized protein #=GS B4PP49/509-679 DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila yakuba; #=GS A0A0P4XZR4/588-751 AC A0A0P4XZR4 #=GS A0A0P4XZR4/588-751 OS Daphnia magna #=GS A0A0P4XZR4/588-751 DE Mediator of RNA polymerase II transcription subunit #=GS A0A0P4XZR4/588-751 DR ORG; Eukaryota; Metazoa; Arthropoda; Crustacea; Branchiopoda; Phyllopoda; Diplostraca; Cladocera; Anomopoda; Daphniidae; Daphnia; Daphnia magna; #=GS A0A0P4Y2X9/588-750 AC A0A0P4Y2X9 #=GS A0A0P4Y2X9/588-750 OS Daphnia magna #=GS A0A0P4Y2X9/588-750 DE Mediator of RNA polymerase II transcription subunit #=GS A0A0P4Y2X9/588-750 DR ORG; Eukaryota; Metazoa; Arthropoda; Crustacea; Branchiopoda; Phyllopoda; Diplostraca; Cladocera; Anomopoda; Daphniidae; Daphnia; Daphnia magna; #=GS A0A0P5QN17/589-751 AC A0A0P5QN17 #=GS A0A0P5QN17/589-751 OS Daphnia magna #=GS A0A0P5QN17/589-751 DE Mediator of RNA polymerase II transcription subunit #=GS A0A0P5QN17/589-751 DR ORG; Eukaryota; Metazoa; Arthropoda; Crustacea; Branchiopoda; Phyllopoda; Diplostraca; Cladocera; Anomopoda; Daphniidae; Daphnia; Daphnia magna; #=GS A0A0P6G7D2/589-751 AC A0A0P6G7D2 #=GS A0A0P6G7D2/589-751 OS Daphnia magna #=GS A0A0P6G7D2/589-751 DE Mediator of RNA polymerase II transcription subunit #=GS A0A0P6G7D2/589-751 DR ORG; Eukaryota; Metazoa; Arthropoda; Crustacea; Branchiopoda; Phyllopoda; Diplostraca; Cladocera; Anomopoda; Daphniidae; Daphnia; Daphnia magna; #=GS A0A0N8DLW0/692-855 AC A0A0N8DLW0 #=GS A0A0N8DLW0/692-855 OS Daphnia magna #=GS A0A0N8DLW0/692-855 DE Mediator of RNA polymerase II transcription subunit #=GS A0A0N8DLW0/692-855 DR ORG; Eukaryota; Metazoa; Arthropoda; Crustacea; Branchiopoda; Phyllopoda; Diplostraca; Cladocera; Anomopoda; Daphniidae; Daphnia; Daphnia magna; #=GS A0A0P5E3W3/628-789 AC A0A0P5E3W3 #=GS A0A0P5E3W3/628-789 OS Daphnia magna #=GS A0A0P5E3W3/628-789 DE Putative Mediator of RNA polymerase II transcription subunit #=GS A0A0P5E3W3/628-789 DR ORG; Eukaryota; Metazoa; Arthropoda; Crustacea; Branchiopoda; Phyllopoda; Diplostraca; Cladocera; Anomopoda; Daphniidae; Daphnia; Daphnia magna; #=GS A0A0P6HUR4/556-717 AC A0A0P6HUR4 #=GS A0A0P6HUR4/556-717 OS Daphnia magna #=GS A0A0P6HUR4/556-717 DE Putative Mediator of RNA polymerase II transcription subunit #=GS A0A0P6HUR4/556-717 DR ORG; Eukaryota; Metazoa; Arthropoda; Crustacea; Branchiopoda; Phyllopoda; Diplostraca; Cladocera; Anomopoda; Daphniidae; Daphnia; Daphnia magna; #=GF SQ 24 Q9VDR1/514-684 -SQQEQASLREKIWTGVLEWSEKPK--SDQQKIPHTLQCTVCTNIKDGEPEIKAENWPPKLLMQLMPKHLVGNIGGQFLKDSKMVVFRPTPGEALDSLAKMMTSGYAGCVHFSSIPNSPACDLKVLILLYTPDRNAFLGFIPNNQAMFVERLRKVIQQKQHGNMQQQQQQQQMM--- Q9VCB1/36-194 --NPENGDSKETIWSGELEWEDAQI--LDQPKTLHTVQCKICSMVKEGQPEINTENWPNKLKTQLIPKKVLGKIGEQFLKDARMVVFRSSQGEVLNLLITAMSSGFAGCIHFPSNPN---CNIKALILIYSRDHQALVGFIPNNEDSFSERLQEILQGAKRKPGVK----------- D2A196/442-606 -----PGRERPSIWQGLLEWIEKPKNPTDQQKITKHVPCQVSANSKDGEPELKADGWPSKLIMQLMPKQLIGNIGGAYLKNSKSVLFHPQPCEALESLTKVMSSGFAGCVHFTSTATPATCDIKVLILLYTAEKRAYLGFIPNDQGAFVDRLRKVIQQQKSTQIMRQTQG------- E9H6X5/370-530 ---ANPARERQVIWQGVLEWQEKTR---DPQKLPRHVPCQVSATVTNGESEVKAEHWPQKLLMQLIPKTLISNFGGAHFRNARSVMFHPQECEALEALAKVMSTGYAGCVHFTGMVNPNACEIKVLMLLYSPDKKAYIGFIPNDQAGFVDRIRKVIQQQKSKQVQPP---------- A0A164ZK13/588-750 --PANPARERQVIWQGVLEWQEKTR---DPQKLPRHVPCQVSASVTNGESEVKAEHWPQKLLMQLIPKTLISNFGGAHFRNARSVMFHPQDCEALEALAKVMSTGYAGCVHFTGMVNPNACEIKVLMLLYSPDKKAYIGFIPNDQAGFVDRIRKVIQQQKSKQVQQPP--------- B4HGK4/35-192 -ENPENADTKEPIWSGELEWEDAQI--LDQPKTLHTLQCKICSMIKEGQPKINTENWPIKLKTQLIPKKVLGKIGEQFLKDARMVVFRSSQGEVLNSLITAMSSGFTGCIHF-SNPN---CNIKALILIYSHDHQALVGFIPNNEDSFSERLQEVLQGAKRKPGV------------ B4QT26/37-196 ---PENADPKEPIWSGELEWEDAQI--LDQPKTLHTLQCKICSMIKEGQPEINTENWPNKLKTQLIPKTVLGKIGEQFLKDARMVIFRSSQEEVLNSLITAMSSGFAGCIHFSSNPN---CNIKALILIYSHDHQALVGFIPNNEDSFSERLQEILQGAKRKPGVNTQ--------- B4ILJ5/507-677 -SQQEQASLREKIWTGILEWSEKPK--SDQQKIPHTLQCTVCTNIKDGEPEIKAENWPPKLLMQLMPKHLVGNIGGQFLKDSKMVVFRPTPGEALDSLAKMMTSGYAGCVHFSSIPNSPACDLKVLILLYTPDRNAFLGFIPNNQAMFVERLRKVIQQKQHGNMQQQQQQQQMM--- B4QSR4/396-569 -SQQEQASLREKIWTGILEWSEKPK--SDQQKIPHTLQCTVCTNIKDGEPEIKAENWPPKLLMQLMPKHLVGNIGGQFLKDSKMVVFRPTPGEALDSLAKMMTSGYAGCVHFSSIPNSPACDLKVLILLYTPDRNAFLGFIPNNQAMFVERLRKVIQQKQHGNMQQQQQQQQMMQQQ B3M0J9/518-691 -PQQEQASLREKIWTGILEWSEKPK--SDQQKIPHTLQCTVCTNIKDGEPEIKAENWPPKLLMQLMPKHLVGNIGGQFLKDSKMVVFRPTPGEALDSLAKMMTSGYAGCVHFSSIPNSPACELKVLILLYTPDRNAFLGFIPNNQAMFVERLRKVIQQKQHGSMQQQQQQQQQQMLQ B4G3Z4/504-673 QQQQEQASLREKIWTGLLEWSEKPK--NDPQKIPHTLQCTVCTNIKDGEPEIKAENWPPKLLMQLMPKHLVGNIGGQFLKDSKMVVFRPSPGEALDSLAKMMTSGYAGCVHFSSIPNAPACELKVLILLYTPDRNAFLGFIPNNQAMFVERLRKVIQQKQHGNMQQQQQQQM----- B5DVL8/501-670 QQQQEQASLREKIWTGLLEWSEKPK--NDPQKIPHTLQCTVCTNIKDGEPEIKAENWPPKLLMQLMPKHLVGNIGGQFLKDSKMVVFRPSPGEALDSLAKMMTSGYAGCVHFSSIPNAPACELKVLILLYTPDRNAFLGFIPNNQAMFVERLRKVIQQKQHGNMQQQQQQQM----- A0A3B0JK08/512-681 -PQQEQASLREKIWTGLLEWSEKPK--NDPQKIPHTLQCTVCTNIKDGEPEIKAENWPPKLLMQLMPKHLVGNIGGQFLKDSKMVVFRPTPGEALDSLAKMMTSGFAGCVHFSSMPNAPACELKVLILLYTPDRNAFLGFIPNNQAMFVERLRKVIQQKQHGNMQQQQQQQQM---- A0A1W4W868/510-681 -PQQEQASLREKIWTGILEWSEKPK--SDPQKIPHSLQCTVCTNIKDGQPEIKAENWPPKLLMQLMPKHLVGNIGGQFLKDSKMVVFRPSPGEALDSLAKMMTSGYAGCVHFSSIPNAPACDLKVLILLYTPDRNAFLGFIPNNQAIFVERLRKVIQQKQHGSMQQQQQQQQMM--Q B3NZ28/505-675 -PQQEQASLREKIWTGLLEWSEKPK--SDQQKIPHTLQCTVCTNIKDGEPEIKAENWPPKLLMQLMPKHLVGNIGGQFLKDSKMVVFRPTPGEALDSLAKMMTSGYAGCVHFSSIPNSPACDLKVLILLYTPDRNAFLGFIPNNQAMFVERLRKVIQQKQHGSMQQQQQQQQMM--- B4IV08/130-299 -SQQEQASLREKIWTGVLEWSEKPK--SDQQKIPHTLQCTVCTNIKDGEPEIKAENWPPKLLMQLMPKHLVGNIGGQFLKDSKMVVFRPTPGEALDSLAKMMTSGYAGCVHFSSIPNSPACDLKVLILLYTPDRNAFLGFIPNNQAMFVERLRKVIQQKQHGNMQQQQQQQQM---- B4PP49/509-679 -SQQEQASLREKIWTGVLEWSEKPK--SDQQKIPHTLQCTVCTNIKDGEPEIKAENWPPKLLMQLMPKHLVGNIGGQFLKDSKMVVFRPTPGEALDSLAKMMTSGYAGCVHFSSIPNSPACDLKVLILLYTPDRNAFLGFIPNNQAMFVERLRKVIQQKQHGNMQQQQQQQQMM--- A0A0P4XZR4/588-751 --PANPARERQVIWQGVLEWQEKTR---DPQKLPRHVPCQVSASVTNGESEVKAEHWPQKLLMQLIPKTLISNFGGAHFRNARSVMFHPQDCEALEALAKVMSTGYAGCVHFTGMVNPNACEIKVLMLLYSPDKKAYIGFIPNDQAGFVDRIRKVIQQQKSKQVQVNIT-------- A0A0P4Y2X9/588-750 --PANPARERQVIWQGVLEWQEKTR---DPQKLPRHVPCQVSASVTNGESEVKAEHWPQKLLMQLIPKTLISNFGGAHFRNARSVMFHPQDCEALEALAKVMSTGYAGCVHFTGMVNPNACEIKVLMLLYSPDKKAYIGFIPNDQAGFVDRIRKVIQQQKSKQVQQPP--------- A0A0P5QN17/589-751 --PANPARERQVIWQGVLEWQEKTR---DPQKLPRHVPCQVSASVTNGESEVKAEHWPQKLLMQLIPKTLISNFGGAHFRNARSVMFHPQDCEALEALAKVMSTGYAGCVHFTGMVNPNACEIKVLMLLYSPDKKAYIGFIPNDQAGFVDRIRKVIQQQKSKQVQQPP--------- A0A0P6G7D2/589-751 --PANPARERQVIWQGVLEWQEKTR---DPQKLPRHVPCQVSASVTNGESEVKAEHWPQKLLMQLIPKTLISNFGGAHFRNARSVMFHPQDCEALEALAKVMSTGYAGCVHFTGMVNPNACEIKVLMLLYSPDKKAYIGFIPNDQAGFVDRIRKVIQQQKSKQVQQPP--------- A0A0N8DLW0/692-855 -APANPARERQVIWQGVLEWQEKTR---DPQKLPRHVPCQVSASVTNGESEVKAEHWPQKLLMQLIPKTLISNFGGAHFRNARSVMFHPQDCEALEALAKVMSTGYAGCVHFTGMVNPNACEIKVLMLLYSPDKKAYIGFIPNDQAGFVDRIRKVIQQQKSKQVQQPP--------- A0A0P5E3W3/628-789 ---ANPARERQVIWQGVLEWQEKTR---DPQKLPRHVPCQVSASVTNGESEVKAEHWPQKLLMQLIPKTLISNFGGAHFRNARSVMFHPQDCEALEALAKVMSTGYAGCVHFTGMVNPNACEIKVLMLLYSPDKKAYIGFIPNDQAGFVDRIRKVIQQQKSKQVQQPP--------- A0A0P6HUR4/556-717 ---ANPARERQVIWQGVLEWQEKTR---DPQKLPRHVPCQVSASVTNGESEVKAEHWPQKLLMQLIPKTLISNFGGAHFRNARSVMFHPQDCEALEALAKVMSTGYAGCVHFTGMVNPNACEIKVLMLLYSPDKKAYIGFIPNDQAGFVDRIRKVIQQQKSKQVQQPP--------- #=GC scorecons 002454743763994949994765500195795665659476546559768677859949967996994766769756676675969674459796596659669789979956458335966979697966865965999996764967967787965645445533111000000 #=GC scorecons_70 ______*__*__**_*_***_**_____*_**_**_*_*_*___*__********_**_**_******_*_**_**__***_*_*_***___***__***_***********_*__*___*_********_**__*__********_***********_*_________________ #=GC scorecons_80 ______*__*__**_*_***_*______*__*______*_*______**_*_***_**_**__**_**_*__*_**___*____*_*_*___***__*___*__********____*___*__***_***__*__*__*****_*__*__*_*****____________________ #=GC scorecons_90 ____________**_*_***________*__*______*________*__*___*_**_**__**_**______*_________*_*_____*_*__*___*__*_***_**____*___*__*_*_*_*__*__*__*****____*__*___*_*____________________ //