# STOCKHOLM 1.0
#=GF ID 3.80.10.10/FF/000724
#=GF DE Class II major histocompatibility complex transactivator
#=GF AC 3.80.10.10/FF/000724
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 60.200
#=GS P79621/1068-1153      AC P79621
#=GS P79621/1068-1153      OS Mus musculus
#=GS P79621/1068-1153      DE MHC class II transactivator
#=GS P79621/1068-1153      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Muridae; Murinae; Mus; Mus; Mus musculus; 
#=GS P79621/1068-1153      DR GO; GO:0000122; GO:0008022; GO:0009986; GO:0016605; GO:0033613; GO:0034341; GO:0044212; GO:0044877; GO:0045345; GO:0045348; GO:0045892; GO:0045893; GO:0045944; GO:0046677; 
#=GS P79621/1068-1153      DR EC; 2.7.11.1; 
#=GS Q3U5G4/991-1076       AC Q3U5G4
#=GS Q3U5G4/991-1076       OS Mus musculus
#=GS Q3U5G4/991-1076       DE Class II transactivator, isoform CRA_a
#=GS Q3U5G4/991-1076       DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Muridae; Murinae; Mus; Mus; Mus musculus; 
#=GS A0A2R8VHC7/988-1073   AC A0A2R8VHC7
#=GS A0A2R8VHC7/988-1073   OS Mus musculus
#=GS A0A2R8VHC7/988-1073   DE Class II transactivator, isoform CRA_c
#=GS A0A2R8VHC7/988-1073   DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Muridae; Murinae; Mus; Mus; Mus musculus; 
#=GS H9GUS6/906-985        AC H9GUS6
#=GS H9GUS6/906-985        OS Anolis carolinensis
#=GS H9GUS6/906-985        DE Uncharacterized protein
#=GS H9GUS6/906-985        DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Lepidosauria; Squamata; Iguania; Dactyloidae; Anolis; Anolis carolinensis; 
#=GS F6ZCE4/1031-1120      AC F6ZCE4
#=GS F6ZCE4/1031-1120      OS Monodelphis domestica
#=GS F6ZCE4/1031-1120      DE Uncharacterized protein
#=GS F6ZCE4/1031-1120      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Didelphimorphia; Didelphidae; Didelphinae; Monodelphis; Monodelphis domestica; 
#=GS F1MG35/1119-1200      AC F1MG35
#=GS F1MG35/1119-1200      OS Bos taurus
#=GS F1MG35/1119-1200      DE Class II major histocompatibility complex transactivator
#=GS F1MG35/1119-1200      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Laurasiatheria; Ruminantia; Pecora; Bovidae; Bovinae; Bos; Bos taurus; 
#=GS A0A1A6GSZ5/1053-1139  AC A0A1A6GSZ5
#=GS A0A1A6GSZ5/1053-1139  OS Neotoma lepida
#=GS A0A1A6GSZ5/1053-1139  DE Uncharacterized protein
#=GS A0A1A6GSZ5/1053-1139  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Cricetidae; Neotominae; Neotoma; Neotoma lepida; 
#=GS L8J0C0/1021-1102      AC L8J0C0
#=GS L8J0C0/1021-1102      OS Bos mutus
#=GS L8J0C0/1021-1102      DE MHC class II transactivator
#=GS L8J0C0/1021-1102      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Laurasiatheria; Ruminantia; Pecora; Bovidae; Bovinae; Bos; Bos mutus; 
#=GS A0A3Q1LZW6/1098-1179  AC A0A3Q1LZW6
#=GS A0A3Q1LZW6/1098-1179  OS Bos taurus
#=GS A0A3Q1LZW6/1098-1179  DE Class II major histocompatibility complex transactivator
#=GS A0A3Q1LZW6/1098-1179  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Laurasiatheria; Ruminantia; Pecora; Bovidae; Bovinae; Bos; Bos taurus; 
#=GS A0A3Q1LQ73/1027-1108  AC A0A3Q1LQ73
#=GS A0A3Q1LQ73/1027-1108  OS Bos taurus
#=GS A0A3Q1LQ73/1027-1108  DE Class II major histocompatibility complex transactivator
#=GS A0A3Q1LQ73/1027-1108  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Laurasiatheria; Ruminantia; Pecora; Bovidae; Bovinae; Bos; Bos taurus; 
#=GS A0A3Q1ME12/1042-1123  AC A0A3Q1ME12
#=GS A0A3Q1ME12/1042-1123  OS Bos taurus
#=GS A0A3Q1ME12/1042-1123  DE Class II major histocompatibility complex transactivator
#=GS A0A3Q1ME12/1042-1123  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Laurasiatheria; Ruminantia; Pecora; Bovidae; Bovinae; Bos; Bos taurus; 
#=GF SQ 11
P79621/1068-1153              ---AKSLLRLSLYNNCICDKGAKSLAQVLPDMVSLRVMDVQFNKFTAAGAQQLASSLQKCPQVETLAMWTPTIPFGVQEHLQQLDARIS-
Q3U5G4/991-1076               ---AKSLLRLSLYNNCICDKGAKSLAQVLPDMVSLRVMDVQFNKFTAAGAQQLASSLQKCPQVETLAMWTPTIPFGVQEHLQQLDARIS-
A0A2R8VHC7/988-1073           ---AKSLLRLSLYNNCICDKGAKSLAQVLPDMVSLRVMDVQFNKFTAAGAQQLASSLQKCPQVETLAMWTPTIPFGVQEHLQQLDARIS-
H9GUS6/906-985                ----FSFLFCSLYKNSIGDAGAGKLAETLPRIHSLKVLDIHCNKITASGAQRLTEALKNCPWVQSLALWSPTIPHGVLDHLQQL------
F6ZCE4/1031-1120              PSLATSLVTLSLYNNCICDTGAKNIASVLPSMVSLRVLDVQYNKFTDAGAQQLTASLKKCPHIETLAMWNSTIPYGVQEHLQHLDSRISL
F1MG35/1119-1200              ---ATSLLRLSLYNNCICDAGAESLAHALPDMVSLRVLDVQYNKFTAAGAQQLAAGLRKCPQVKTLAMWTPTIPFGVQEHLQQLD-----
A0A1A6GSZ5/1053-1139          PALAKSLLRLSLYNNCICDAGARSLAQVLPDMVSLRVMDVQFNKFTAAGAQQLASSLQKCPQVETLAMWTPTIPFGVQEHLQQLDAR---
L8J0C0/1021-1102              ---ATSLLRLSLYNNCICDAGAESLAHALPDMVSLRVLDVQYNKFTAAGAQQLAAGLRKCPQVKTLAMWTPTIPFGVQEHLQQLD-----
A0A3Q1LZW6/1098-1179          ---ATSLLRLSLYNNCICDAGAESLAHALPDMVSLRVLDVQYNKFTAAGAQQLAAGLRKCPQVKTLAMWTPTIPFGVQEHLQQLD-----
A0A3Q1LQ73/1027-1108          ---ATSLLRLSLYNNCICDAGAESLAHALPDMVSLRVLDVQYNKFTAAGAQQLAAGLRKCPQVKTLAMWTPTIPFGVQEHLQQLD-----
A0A3Q1ME12/1042-1123          ---ATSLLRLSLYNNCICDAGAESLAHALPDMVSLRVLDVQYNKFTAAGAQQLAAGLRKCPQVKTLAMWTPTIPFGVQEHLQQLD-----
#=GC scorecons                000539774699979796959945794599576997969776996977999796459579958579979579996996799979511110
#=GC scorecons_70             _____***__*********_**__**__**_*_********_************__*_***_*_*****_**************______
#=GC scorecons_80             _____***__***_*_*_*_**__**__**_*_****_***_**_*__*****___*__**_*__****_****_**_******______
#=GC scorecons_90             _____*____***_*_*_*_**___*__**___**_*_*___**_*__***_*___*__**____**_*__***_**__***_*______
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