# STOCKHOLM 1.0
#=GF ID 3.40.1280.10/FF/000042
#=GF DE Ribosomal RNA small subunit methyltransferase Nep1
#=GF AC 3.40.1280.10/FF/000042
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 93.240
#=GS 3bbhB00/1-205     AC Q57977
#=GS 3bbhB00/1-205     OS Methanocaldococcus jannaschii DSM 2661
#=GS 3bbhB00/1-205     DE Ribosomal RNA small subunit methyltransferase Nep1
#=GS 3bbhB00/1-205     DR CATH; 3bbh; B:2-205; 
#=GS 3bbhB00/1-205     DR ORG; Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanocaldococcaceae; Methanocaldococcus; Methanocaldococcus jannaschii; 
#=GS 3bbhB00/1-205     DR GO; GO:0019843; GO:0042803; GO:0070037; GO:0070475; 
#=GS 3bbhA00/1-205     AC Q57977
#=GS 3bbhA00/1-205     OS Methanocaldococcus jannaschii DSM 2661
#=GS 3bbhA00/1-205     DE Ribosomal RNA small subunit methyltransferase Nep1
#=GS 3bbhA00/1-205     DR CATH; 3bbh; A:2-205; 
#=GS 3bbhA00/1-205     DR ORG; Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanocaldococcaceae; Methanocaldococcus; Methanocaldococcus jannaschii; 
#=GS 3bbhA00/1-205     DR GO; GO:0019843; GO:0042803; GO:0070037; GO:0070475; 
#=GS 3bbeB00/1-205     AC Q57977
#=GS 3bbeB00/1-205     OS Methanocaldococcus jannaschii DSM 2661
#=GS 3bbeB00/1-205     DE Ribosomal RNA small subunit methyltransferase Nep1
#=GS 3bbeB00/1-205     DR CATH; 3bbe; B:2-205; 
#=GS 3bbeB00/1-205     DR ORG; Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanocaldococcaceae; Methanocaldococcus; Methanocaldococcus jannaschii; 
#=GS 3bbeB00/1-205     DR GO; GO:0019843; GO:0042803; GO:0070037; GO:0070475; 
#=GS 3bbeA00/1-205     AC Q57977
#=GS 3bbeA00/1-205     OS Methanocaldococcus jannaschii DSM 2661
#=GS 3bbeA00/1-205     DE Ribosomal RNA small subunit methyltransferase Nep1
#=GS 3bbeA00/1-205     DR CATH; 3bbe; A:2-205; 
#=GS 3bbeA00/1-205     DR ORG; Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanocaldococcaceae; Methanocaldococcus; Methanocaldococcus jannaschii; 
#=GS 3bbeA00/1-205     DR GO; GO:0019843; GO:0042803; GO:0070037; GO:0070475; 
#=GS Q57977/1-205      AC Q57977
#=GS Q57977/1-205      OS Methanocaldococcus jannaschii DSM 2661
#=GS Q57977/1-205      DE Ribosomal RNA small subunit methyltransferase Nep1
#=GS Q57977/1-205      DR ORG; Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanocaldococcaceae; Methanocaldococcus; Methanocaldococcus jannaschii; 
#=GS Q57977/1-205      DR GO; GO:0019843; GO:0042803; GO:0070037; GO:0070475; 
#=GS B1L6J0/1-212      AC B1L6J0
#=GS B1L6J0/1-212      OS Candidatus Korarchaeum cryptofilum OPF8
#=GS B1L6J0/1-212      DE Suppressor Mra1 family protein
#=GS B1L6J0/1-212      DR ORG; Archaea; Candidatus Korarchaeota; Candidatus Korarchaeum; Candidatus Korarchaeum cryptofilum; 
#=GS A9A643/1-221      AC A9A643
#=GS A9A643/1-221      OS Nitrosopumilus maritimus SCM1
#=GS A9A643/1-221      DE Ribosomal RNA small subunit methyltransferase Nep1
#=GS A9A643/1-221      DR ORG; Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus; Nitrosopumilus maritimus; 
#=GS Q97WJ0/1-215      AC Q97WJ0
#=GS Q97WJ0/1-215      OS Saccharolobus solfataricus P2
#=GS Q97WJ0/1-215      DE Ribosomal RNA small subunit methyltransferase Nep1
#=GS Q97WJ0/1-215      DR ORG; Archaea; Crenarchaeota; Thermoprotei; Sulfolobales; Sulfolobaceae; Saccharolobus; Saccharolobus solfataricus; 
#=GS Q8ZW45/1-219      AC Q8ZW45
#=GS Q8ZW45/1-219      OS Pyrobaculum aerophilum str. IM2
#=GS Q8ZW45/1-219      DE Ribosomal RNA small subunit methyltransferase Nep1
#=GS Q8ZW45/1-219      DR ORG; Archaea; Crenarchaeota; Thermoprotei; Thermoproteales; Thermoproteaceae; Pyrobaculum; Pyrobaculum aerophilum; 
#=GS Q5JI44/2-218      AC Q5JI44
#=GS Q5JI44/2-218      OS Thermococcus kodakarensis KOD1
#=GS Q5JI44/2-218      DE Ribosomal RNA small subunit methyltransferase Nep1
#=GS Q5JI44/2-218      DR ORG; Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus; Thermococcus kodakarensis; 
#=GS A0A087RXI0/1-221  AC A0A087RXI0
#=GS A0A087RXI0/1-221  OS Marine Group I thaumarchaeote SCGC AAA799-P11
#=GS A0A087RXI0/1-221  DE Ribosomal RNA small subunit methyltransferase Nep1
#=GS A0A087RXI0/1-221  DR ORG; Archaea; Thaumarchaeota; Marine Group I thaumarchaeote SCGC AAA799-P11; 
#=GS D0KUA5/6-220      AC D0KUA5
#=GS D0KUA5/6-220      OS Saccharolobus solfataricus 98/2
#=GS D0KUA5/6-220      DE Ribosomal RNA small subunit methyltransferase Nep1
#=GS D0KUA5/6-220      DR ORG; Archaea; Crenarchaeota; Thermoprotei; Sulfolobales; Sulfolobaceae; Saccharolobus; Saccharolobus solfataricus; 
#=GS A0A0E3GVT7/6-220  AC A0A0E3GVT7
#=GS A0A0E3GVT7/6-220  OS Saccharolobus solfataricus
#=GS A0A0E3GVT7/6-220  DE Ribosomal RNA small subunit methyltransferase Nep1
#=GS A0A0E3GVT7/6-220  DR ORG; Archaea; Crenarchaeota; Thermoprotei; Sulfolobales; Sulfolobaceae; Saccharolobus; Saccharolobus solfataricus; 
#=GS A0A371R5T5/1-219  AC A0A371R5T5
#=GS A0A371R5T5/1-219  OS Pyrobaculum aerophilum
#=GS A0A371R5T5/1-219  DE Ribosomal RNA small subunit methyltransferase Nep1
#=GS A0A371R5T5/1-219  DR ORG; Archaea; Crenarchaeota; Thermoprotei; Thermoproteales; Thermoproteaceae; Pyrobaculum; Pyrobaculum aerophilum; 
#=GF SQ 14
3bbhB00/1-205             MTYNIILAKSALELIPEEIKN-------KIRKSRVYKYDILDSNYHYKAMEKLKDKEMRGRPDIIHISLLNILDSPINHEKKLNIYIHTYDDKVLKINPETRLPRNYFRFLGVMEKVLKGER------NHLIKMEEKTLEDLLNEINAKKIAIMTKTGKLTHP----KLLKEYD---TFIIGGFPYGKLKIN-KEKVFGDIKEISIYNKGLMAWTVCGIICYSLSF---
3bbhA00/1-205             MTYNIILAKSALELIPEEIKN-------KIRKSRVYKYDILDSNYHYKAMEKLKDKEMRGRPDIIHISLLNILDSPINHEKKLNIYIHTYDDKVLKINPETRLPRNYFRFLGVMEKVLKGER------NHLIKMEEKTLEDLLNEINAKKIAIMTKTGKLTHP----KLLKEYD---TFIIGGFPYGKLKIN-KEKVFGDIKEISIYNKGLMAWTVCGIICYSLSF---
3bbeB00/1-205             MTYNIILAKSALELIPEEIKN-------KIRKSRVYKYDILDSNYHYKAMEKLKDKEMRGRPDIIHISLLNILDSPINHEKKLNIYIHTYDDKVLKINPETRLPRNYFRFLGVMEKVLKGER------NHLIKMEEKTLEDLLNEINAKKIAIMTKTGKLTHP----KLLKEYD---TFIIGGFPYGKLKIN-KEKVFGDIKEISIYNKGLMAWTVCGIICYSLSF---
3bbeA00/1-205             MTYNIILAKSALELIPEEIKN-------KIRKSRVYKYDILDSNYHYKAMEKLKDKEMRGRPDIIHISLLNILDSPINHEKKLNIYIHTYDDKVLKINPETRLPRNYFRFLGVMEKVLKGER------NHLIKMEEKTLEDLLNEINAKKIAIMTKTGKLTHP----KLLKEYD---TFIIGGFPYGKLKIN-KEKVFGDIKEISIYNKGLMAWTVCGIICYSLSF---
Q57977/1-205              MTYNIILAKSALELIPEEIKN-------KIRKSRVYKYDILDSNYHYKAMEKLKDKEMRGRPDIIHISLLNILDSPINHEKKLNIYIHTYDDKVLKINPETRLPRNYFRFLGVMEKVLKGER------NHLIKMEEKTLEDLLNEINAKKIAIMTKTGKLTHP----KLLKEYD---TFIIGGFPYGKLKIN-KEKVFGDIKEISIYNKGLMAWTVCGIICYSLSF---
B1L6J0/1-212              M-ITLVLVESSLSRLPDWARR-KDVISNYKKVYGKPYD-VLDVNAIPPRMRKMV-GEKEGRPDIVHRALLSITDHPLYSMGRISLYMHTVEERIFSFSPSIRPPRNYLRFLGLMAELLREGWVGESRETALIREVDLTLEEIA-----DGSILLDESGEFLNPI---SFLKS-LNEGKFIVGCFPHGEFSEK-VERLAK--FKLSLHRGTLSSSAAISMLLSYAYYKE-
A9A643/1-221              M-ISVVLAESALELVPSELKHHQSVISHARKLGKLSSEILLDNSWHFAAMKGIINELKRGRPDLVHFSILEATTIPLYLKNKIKLYVHTIDDKVIYFGQNVHVPKSYHRFAGLIEKLYKEKKIIANN-ETLLEIKNKTFSELIDEINPSKIIGFSTKGT---ENSYEKIVSEINTDYCLVFGGFQKGHFSDS-IEKKFA--QMYSVGNEPFEGHTVVARMLYEYEKTIF
Q97WJ0/1-215              MHLNIILLEASLELVPKEIVNHPAVIKNAKRRNKKPEDTLLDISLHYHAMKYLENSHKRGRPDILHQALLVILTDPVI---KGDIFIHTIQSKIIKVNPNMRPPKNYLRFIGLMEQLLKYGKIPINGDETLMEVTNLTLDNIVNRYD---LILLSEKGEKINPE---EICKL-DEKWLLGIGAFPHGDFSDK-ILNLAK--KIYSISGFPLETQQVLCRIFSACNSIL-
Q8ZW45/1-219              --MILVLAESALELVPKEIWNHPAVLADARRRGKRPGEILLDRARHHPAMRLLADAKRRGRPDIVHQVLLAFQYSLLAKRGLGKAYIHTRDDYVIAVSPEARVPKNYNNFVALIEQLFALGKVPPKG-EPLMELYRKDLATLLQELG-GVWAVFHESGA---RKPLSQMGSE-LLKSVVVVGGFPHGDFQNKWVVEKAA--VVYSLGEESLDAAQVICKAVTAAEVAAG
Q5JI44/2-218              --LHLIIAEAELELVPESIRDHPAVVNYARRRKKRPEEAILDSTYHHAALKKLPDGDRRGRPDIVHICLLNALESIANKEGFLRVYVHTRNDEVIHIKPETRLPRNYNRFLGLMESLFKKGAVPEG--LELLRIEKKPLESLIEDINPDTVFIMHEEGELIRPRSFGEILAS-HQNPVVVVGGFPHGDFMRP-IEGT-----KVSLYREPLMAWTVVSEVIVNFEAAL-
A0A087RXI0/1-221          M-ISIVLAESALELVPSDLKHHPSVVSHARKLGKLSSEILLDNSWHFAAMKGINNELKRGRPDLVHFSILEATTLPLYLKNKIKLYVHTIDDKVIYFGQNVHVPKSYHRFAGLIEKLYKEKKITAND-DTLLEIKNKTFSELIDEIHPSKIIGLSTKGT---KNSYEKIAGEINDDYCLVFGGFQKGHFSDS-IEKQFA--QMYSIGDESFEGHTVVARMLYEYEKTIF
D0KUA5/6-220              MHLNIILLEASLELVPKEIVNHPAVIKNAKRRNKKPEDTLLDISLHYHAMKYLENSHKRGRPDILHQALLVILTDPVI---KGDIFIHTIQSKIIKVNPNMRPPKNYLRFIGLMEQLLKYGKIPINGDETLMEVTNLTLDNIVNRYD---LILLSEKGEKINPE---EICKL-DEKWLLGIGAFPHGDFSDK-ILNLAK--KIYSISGFPLETQQVLCRIFSACNSIL-
A0A0E3GVT7/6-220          MHLNIILLEASLELVPKEIVNHPAVIKNAKRRNKKPEDTLLDISLHYHAMKYLENSHKRGRPDILHQALLVILTDPVI---KGDIFIHTIQSKIIKVNPNMRPPKNYLRFIGLMEQLLKYGKIPINGDETLMEVTNLTLDNIVNRYD---LILLSEKGEKINPE---EICKL-DEKWLLGIGAFPHGDFSDK-ILNLAK--KIYSISGFPLETQQVLCRIFSACNSIL-
A0A371R5T5/1-219          --MILVLAESALELVPKEIWNHPAVLADARRRGKRPGEILLDRARHHPAMRLLADAKRRGRPDIVHQVLLAFQYSLLAKRGLGKAYIHTRDDYVIAVSPEARVPKNYNNFVALIEQLFALGKVPPKG-EPLMELYRKDLATLLQELG-GVWAVFHESGA---RKPLSQMGSE-LLKSVVVVGGFPHGDFQNKWVVEKAA--VVYSLGEESLDAAQVICKAVTAAEVAAG
#=GC scorecons            5144678566597769466363224212447446343436993437537853735334799997693479354446532225345779935657645575474977937957677565625532121044955434567446545441224545454942225100055354141213555969759464340444343003349634347453584435344343110
#=GC scorecons_70         ____***_**_*****__*___________*__*______**___*__**__*_____******_*__**_____*_________****__*_*____*__*_****_**_****_*_*___________*______**__*_______________*_______________________*_**_*_*_______________**____*____*_____________
#=GC scorecons_80         ______*____***_*______________*_________**___*__**________******_*__**_______________*_**____*____*__*_*_**_**_*__*_______________*_______*__________________*_______________________*_**_*_________________*_____*____*_____________
#=GC scorecons_90         ______*____*___*________________________**_______*_________****__*___*_________________**______________*__*__*____________________*__________________________*_______________________*_*__*_________________*________________________
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