# STOCKHOLM 1.0
#=GF ID 3.30.70.330/FF/000676
#=GF DE U2 snRNP auxiliary factor large subunit
#=GF AC 3.30.70.330/FF/000676
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 71.350
#=GS Q9W1T4/202-205_242-293  AC Q9W1T4
#=GS Q9W1T4/202-205_242-293  OS Drosophila melanogaster
#=GS Q9W1T4/202-205_242-293  DE U2 snRNP auxiliary factor large subunit
#=GS Q9W1T4/202-205_242-293  DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila melanogaster; 
#=GS Q9W1T4/202-205_242-293  DR GO; GO:0003723; GO:0003729; GO:0005515; GO:0033119; GO:0060968; 
#=GS Q54LV5/354-357_378-429  AC Q54LV5
#=GS Q54LV5/354-357_378-429  OS Dictyostelium discoideum
#=GS Q54LV5/354-357_378-429  DE Uncharacterized protein
#=GS Q54LV5/354-357_378-429  DR ORG; Eukaryota; Dictyosteliales; Dictyosteliaceae; Dictyostelium; Dictyostelium discoideum; 
#=GS Q54LV5/354-357_378-429  DR GO; GO:0000398; GO:0008187; 
#=GS Q8T8Y4/202-205_242-293  AC Q8T8Y4
#=GS Q8T8Y4/202-205_242-293  OS Drosophila melanogaster
#=GS Q8T8Y4/202-205_242-293  DE U2 snRNP auxiliary factor large subunit
#=GS Q8T8Y4/202-205_242-293  DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila melanogaster; 
#=GS Q8T8Y4/202-205_242-293  DR GO; GO:0003723; GO:0003729; GO:0005515; GO:0033119; GO:0060968; 
#=GS T1FNY6/358-358_415-466  AC T1FNY6
#=GS T1FNY6/358-358_415-466  OS Helobdella robusta
#=GS T1FNY6/358-358_415-466  DE Uncharacterized protein
#=GS T1FNY6/358-358_415-466  DR ORG; Eukaryota; Metazoa; Annelida; Clitellata; Hirudinea; Hirudinida; Glossiphoniiformes; Glossiphoniidae; Helobdella; Helobdella robusta; 
#=GS H6QU19/441-507          AC H6QU19
#=GS H6QU19/441-507          OS Puccinia graminis f. sp. tritici CRL 75-36-700-3
#=GS H6QU19/441-507          DE Uncharacterized protein
#=GS H6QU19/441-507          DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Pucciniomycotina; Pucciniomycetes; Pucciniales; Pucciniaceae; Puccinia; Puccinia graminis; 
#=GS A0A0D1CHB4/457-513      AC A0A0D1CHB4
#=GS A0A0D1CHB4/457-513      OS Ustilago maydis 521
#=GS A0A0D1CHB4/457-513      DE Chromosome 19, whole genome shotgun sequence
#=GS A0A0D1CHB4/457-513      DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Ustilaginomycotina; Ustilaginomycetes; Ustilaginales; Ustilaginaceae; Ustilago; Ustilago maydis; 
#=GS F0ZQL5/247-320          AC F0ZQL5
#=GS F0ZQL5/247-320          OS Dictyostelium purpureum
#=GS F0ZQL5/247-320          DE U2 snRNP auxiliary factor large subunit
#=GS F0ZQL5/247-320          DR ORG; Eukaryota; Dictyosteliales; Dictyosteliaceae; Dictyostelium; Dictyostelium purpureum; 
#=GS F4R5G1/137-204          AC F4R5G1
#=GS F4R5G1/137-204          OS Melampsora larici-populina 98AG31
#=GS F4R5G1/137-204          DE U2 snRNP auxiliary factor large subunit
#=GS F4R5G1/137-204          DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Pucciniomycotina; Pucciniomycetes; Pucciniales; Melampsoraceae; Melampsora; Melampsora larici-populina; 
#=GS V5GMJ3/446-502          AC V5GMJ3
#=GS V5GMJ3/446-502          OS Kalmanozyma brasiliensis GHG001
#=GS V5GMJ3/446-502          DE Uncharacterized protein
#=GS V5GMJ3/446-502          DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Ustilaginomycotina; Ustilaginomycetes; Ustilaginales; Ustilaginaceae; Kalmanozyma; Kalmanozyma brasiliensis; 
#=GS R9P966/453-509          AC R9P966
#=GS R9P966/453-509          OS Pseudozyma hubeiensis SY62
#=GS R9P966/453-509          DE Splicing factor, subunit
#=GS R9P966/453-509          DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Ustilaginomycotina; Ustilaginomycetes; Ustilaginales; Ustilaginaceae; Pseudozyma; Pseudozyma hubeiensis; 
#=GS A0A0L0VBA2/429-495      AC A0A0L0VBA2
#=GS A0A0L0VBA2/429-495      OS Puccinia striiformis f. sp. tritici PST-78
#=GS A0A0L0VBA2/429-495      DE Uncharacterized protein
#=GS A0A0L0VBA2/429-495      DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Pucciniomycotina; Pucciniomycetes; Pucciniales; Pucciniaceae; Puccinia; Puccinia striiformis; 
#=GS A0A180H444/395-461      AC A0A180H444
#=GS A0A180H444/395-461      OS Puccinia triticina 1-1 BBBD Race 1
#=GS A0A180H444/395-461      DE Uncharacterized protein
#=GS A0A180H444/395-461      DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Pucciniomycotina; Pucciniomycetes; Pucciniales; Pucciniaceae; Puccinia; Puccinia triticina; 
#=GS A0A0L6VLW1/467-533      AC A0A0L6VLW1
#=GS A0A0L6VLW1/467-533      OS Puccinia sorghi
#=GS A0A0L6VLW1/467-533      DE Uncharacterized protein
#=GS A0A0L6VLW1/467-533      DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Pucciniomycotina; Pucciniomycetes; Pucciniales; Pucciniaceae; Puccinia; Puccinia sorghi; 
#=GS A0A2N5S6I5/434-500      AC A0A2N5S6I5
#=GS A0A2N5S6I5/434-500      OS Puccinia coronata var. avenae f. sp. avenae
#=GS A0A2N5S6I5/434-500      DE Uncharacterized protein
#=GS A0A2N5S6I5/434-500      DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Pucciniomycotina; Pucciniomycetes; Pucciniales; Pucciniaceae; Puccinia; Puccinia coronata; Puccinia coronata var. avenae; 
#=GS I2FSE7/447-503          AC I2FSE7
#=GS I2FSE7/447-503          OS Ustilago hordei Uh4857-4
#=GS I2FSE7/447-503          DE Related to pre-mRNA splicing factor U2AF large chain
#=GS I2FSE7/447-503          DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Ustilaginomycotina; Ustilaginomycetes; Ustilaginales; Ustilaginaceae; Ustilago; Ustilago hordei; 
#=GS B4I8I1/198-201_238-289  AC B4I8I1
#=GS B4I8I1/198-201_238-289  OS Drosophila sechellia
#=GS B4I8I1/198-201_238-289  DE U2 snRNP auxiliary factor large subunit
#=GS B4I8I1/198-201_238-289  DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila sechellia; 
#=GS B4QI74/198-201_238-289  AC B4QI74
#=GS B4QI74/198-201_238-289  OS Drosophila simulans
#=GS B4QI74/198-201_238-289  DE U2 snRNP auxiliary factor large subunit
#=GS B4QI74/198-201_238-289  DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila simulans; 
#=GS A0A2S4VK24/407-473      AC A0A2S4VK24
#=GS A0A2S4VK24/407-473      OS Puccinia striiformis
#=GS A0A2S4VK24/407-473      DE Uncharacterized protein
#=GS A0A2S4VK24/407-473      DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Pucciniomycotina; Pucciniomycetes; Pucciniales; Pucciniaceae; Puccinia; Puccinia striiformis; 
#=GF SQ 18
Q9W1T4/202-205_242-293          -----------------VP-SINKIYVGGLPTCLNQDQVKELLQSFGELKGLNLVMDTNTN--LNKGFAFFEYCDP
Q54LV5/354-357_378-429          ------------------TSDNNKIYVGGLPSNLSEEQVKSLLSAYGKLKAFNLVKDTNTG--VSKGFAFCEYQDS
Q8T8Y4/202-205_242-293          -----------------VP-SINKIYVGGLPTCLNQDQVKELLQSFGELKGLNLVMDTNTN--LNKGFAFFEYCDP
T1FNY6/358-358_415-466          ---------------------KYKIFVGGIPSYLNEDQVKELLSSFGPLKSFNLVKDPVTM--LSKGFAFAEYSDY
H6QU19/441-507                  ---------IPGVVSTNVPDSPNKIFIGGLPSYLTDDQVMELLKSFGELKSFNLVKDTSSGGHVSKGFAFCEYVDP
A0A0D1CHB4/457-513              -----------------VPDSPHKIFVGGLPTYLNDDQVIELLQAFGELRAFNLVKDTGTG--ASKGFAFCEYVDP
F0ZQL5/247-320                  SNDPTNTSALPTIVPTNVPDSEHKIFVGGLPSNLNEEQVKTLLSAYGKLKAFNLVKDTNTG--ISKGYAFCEYLDP
F4R5G1/137-204                  --------HIPGVVSTNVPDSPNKIFIGGLPSYLTDDQVMELLKSFGELKSFNLVKDTSSGGQVSKGFAFCEYVDS
V5GMJ3/446-502                  -----------------VPDSPHKIFVGGLPTYLTDDQVVELLQAFGELRAFNLVKDAGTG--ASKGFAFCEYVDT
R9P966/453-509                  -----------------VPDSPHKIFVGGLPTYLTDDQVIELLQAFGELRAFNLVKDTGTG--ASKGFAFCEYVDP
A0A0L0VBA2/429-495              ---------IPGVVSTNVPDSPNKIFIGGLPSYLTDDQVMELLKSFGELKSFNLVKDTSSGGHVSKGFAFCEYVDP
A0A180H444/395-461              ---------IPGVVSTNVPDSPNKIFIGGLPSYLTDDQVMELLKSFGELKSFNLVKDTSSGGHVSKGFAFCEYVDP
A0A0L6VLW1/467-533              ---------IPGVVSTNVPDSPNKIFIGGLPSYLTDDQVMELLKSFGELKSFNLVKDTSSGGHVSKGFAFCEYVDP
A0A2N5S6I5/434-500              ---------IPGVVSTNVPDSPNKIFIGGLPSYLTDDQVMELLKSFGELKSFNLVKDTSSGGHVSKGFAFCEYVDP
I2FSE7/447-503                  -----------------VPDSPHKIFVGGLPTYLTDDQVIELLQAFGELRAFNLVKDTANG--ASKGFAFCEYVDT
B4I8I1/198-201_238-289          -----------------VP-SINKIYVGGLPTCLNQDQVKELLQSFGELKGLNLVMDGNTS--LNKGFAFFEYYDP
B4QI74/198-201_238-289          -----------------VP-SINKIYVGGLPTCLNQDQVKELLQSFGELKGLNLVMDGNTS--LNKGFAFFEYYDP
A0A2S4VK24/407-473              ---------IPGVVSTNVPDSPNKIFIGGLPSYLTDDQVMELLKSFGELKSFNLVKDTSSGGHVSKGFAFCEYVDP
#=GC scorecons                  0000000001111111166364699779989659558994799568969757999696465005699899599495
#=GC scorecons_70               _________________**_*__********__*__***_***_******_****_**______******_**_*_
#=GC scorecons_80               _______________________********__*__***__**__**_**__***_*________*****_**_*_
#=GC scorecons_90               _______________________**__****__*___**__**__**_*___***_*________*****_**_*_
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