# STOCKHOLM 1.0
#=GF ID 3.30.70.330/FF/000476
#=GF DE Zinc finger CCCH domain-containing protein 4
#=GF AC 3.30.70.330/FF/000476
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 89.870
#=GS Q9LNV5/213-310      AC Q9LNV5
#=GS Q9LNV5/213-310      OS Arabidopsis thaliana
#=GS Q9LNV5/213-310      DE Zinc finger CCCH domain-containing protein 4
#=GS Q9LNV5/213-310      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS Q9LNV5/213-310      DR GO; GO:0003729; GO:0005515; GO:0005634; GO:0042742; 
#=GS Q9ZW36/213-308      AC Q9ZW36
#=GS Q9ZW36/213-308      OS Arabidopsis thaliana
#=GS Q9ZW36/213-308      DE Zinc finger CCCH domain-containing protein 25
#=GS Q9ZW36/213-308      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS Q9ZW36/213-308      DR GO; GO:0005515; 
#=GS Q22412/221-321      AC Q22412
#=GS Q22412/221-321      OS Caenorhabditis elegans
#=GS Q22412/221-321      DE RNA Binding Motif protein homolog
#=GS Q22412/221-321      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS Q22412/221-321      DR GO; GO:0005634; 
#=GS F4K5C2/211-283      AC F4K5C2
#=GS F4K5C2/211-283      OS Arabidopsis thaliana
#=GS F4K5C2/211-283      DE CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein
#=GS F4K5C2/211-283      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS Q9FL40/211-283      AC Q9FL40
#=GS Q9FL40/211-283      OS Arabidopsis thaliana
#=GS Q9FL40/211-283      DE Zinc finger CCCH domain-containing protein 53
#=GS Q9FL40/211-283      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS A8J9D3/98-213       AC A8J9D3
#=GS A8J9D3/98-213       OS Chlamydomonas reinhardtii
#=GS A8J9D3/98-213       DE Predicted protein
#=GS A8J9D3/98-213       DR ORG; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas; Chlamydomonas reinhardtii; 
#=GS Q4PGU6/214-317      AC Q4PGU6
#=GS Q4PGU6/214-317      OS Ustilago maydis 521
#=GS Q4PGU6/214-317      DE Pre-mRNA-splicing factor SLT11
#=GS Q4PGU6/214-317      DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Ustilaginomycotina; Ustilaginomycetes; Ustilaginales; Ustilaginaceae; Ustilago; Ustilago maydis; 
#=GS A0A0P0WTE0/138-233  AC A0A0P0WTE0
#=GS A0A0P0WTE0/138-233  OS Oryza sativa Japonica Group
#=GS A0A0P0WTE0/138-233  DE Os06g0170500 protein
#=GS A0A0P0WTE0/138-233  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa; 
#=GS F6V766/218-315      AC F6V766
#=GS F6V766/218-315      OS Ciona intestinalis
#=GS F6V766/218-315      DE Uncharacterized protein
#=GS F6V766/218-315      DR ORG; Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Enterogona; Phlebobranchia; Cionidae; Ciona; Ciona intestinalis; 
#=GS A0A078FRV1/214-308  AC A0A078FRV1
#=GS A0A078FRV1/214-308  OS Brassica napus
#=GS A0A078FRV1/214-308  DE BnaA08g28930D protein
#=GS A0A078FRV1/214-308  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica napus; 
#=GS V4MG00/213-307      AC V4MG00
#=GS V4MG00/213-307      OS Eutrema salsugineum
#=GS V4MG00/213-307      DE Uncharacterized protein
#=GS V4MG00/213-307      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Eutremeae; Eutrema; Eutrema salsugineum; 
#=GS A0A1J3GFP1/213-307  AC A0A1J3GFP1
#=GS A0A1J3GFP1/213-307  OS Noccaea caerulescens
#=GS A0A1J3GFP1/213-307  DE Zinc finger CCCH domain-containing protein 25
#=GS A0A1J3GFP1/213-307  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Coluteocarpeae; Noccaea; Noccaea caerulescens; 
#=GS H3F4W2/238-310      AC H3F4W2
#=GS H3F4W2/238-310      OS Pristionchus pacificus
#=GS H3F4W2/238-310      DE Uncharacterized protein
#=GS H3F4W2/238-310      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Diplogasteromorpha; Diplogasteroidea; Neodiplogasteridae; Pristionchus; Pristionchus pacificus; 
#=GS R0GWK5/189-286      AC R0GWK5
#=GS R0GWK5/189-286      OS Capsella rubella
#=GS R0GWK5/189-286      DE Uncharacterized protein
#=GS R0GWK5/189-286      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Capsella; Capsella rubella; 
#=GS K7VE89/212-310      AC K7VE89
#=GS K7VE89/212-310      OS Zea mays
#=GS K7VE89/212-310      DE Zinc finger CCCH domain-containing protein 4
#=GS K7VE89/212-310      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; 
#=GS M4EPF9/214-308      AC M4EPF9
#=GS M4EPF9/214-308      OS Brassica rapa subsp. pekinensis
#=GS M4EPF9/214-308      DE Uncharacterized protein
#=GS M4EPF9/214-308      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica rapa; Brassica rapa subsp. pekinensis; 
#=GS A0A3P6GIU9/214-308  AC A0A3P6GIU9
#=GS A0A3P6GIU9/214-308  OS Brassica oleracea
#=GS A0A3P6GIU9/214-308  DE Uncharacterized protein
#=GS A0A3P6GIU9/214-308  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica oleracea; 
#=GS D7KH15/213-310      AC D7KH15
#=GS D7KH15/213-310      OS Arabidopsis lyrata subsp. lyrata
#=GS D7KH15/213-310      DE Uncharacterized protein
#=GS D7KH15/213-310      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis lyrata; Arabidopsis lyrata subsp. lyrata; 
#=GS A0A0D3DJ96/214-308  AC A0A0D3DJ96
#=GS A0A0D3DJ96/214-308  OS Brassica oleracea var. oleracea
#=GS A0A0D3DJ96/214-308  DE Uncharacterized protein
#=GS A0A0D3DJ96/214-308  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica oleracea; Brassica oleracea var. oleracea; 
#=GS A0A2G5U7W1/219-319  AC A0A2G5U7W1
#=GS A0A2G5U7W1/219-319  OS Caenorhabditis nigoni
#=GS A0A2G5U7W1/219-319  DE Uncharacterized protein
#=GS A0A2G5U7W1/219-319  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis nigoni; 
#=GS A8XRP6/224-324      AC A8XRP6
#=GS A8XRP6/224-324      OS Caenorhabditis briggsae
#=GS A8XRP6/224-324      DE Protein CBG17615
#=GS A8XRP6/224-324      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis briggsae; 
#=GS G0P902/221-321      AC G0P902
#=GS G0P902/221-321      OS Caenorhabditis brenneri
#=GS G0P902/221-321      DE Uncharacterized protein
#=GS G0P902/221-321      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis brenneri; 
#=GS E3M561/221-321      AC E3M561
#=GS E3M561/221-321      OS Caenorhabditis remanei
#=GS E3M561/221-321      DE Uncharacterized protein
#=GS E3M561/221-321      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis remanei; 
#=GS A0A2H2I832/82-181   AC A0A2H2I832
#=GS A0A2H2I832/82-181   OS Caenorhabditis japonica
#=GS A0A2H2I832/82-181   DE Uncharacterized protein
#=GS A0A2H2I832/82-181   DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis japonica; 
#=GS A0A1I7UNB4/221-321  AC A0A1I7UNB4
#=GS A0A1I7UNB4/221-321  OS Caenorhabditis tropicalis
#=GS A0A1I7UNB4/221-321  DE Uncharacterized protein
#=GS A0A1I7UNB4/221-321  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis tropicalis; 
#=GS A0A260ZS27/775-875  AC A0A260ZS27
#=GS A0A260ZS27/775-875  OS Caenorhabditis latens
#=GS A0A260ZS27/775-875  DE Uncharacterized protein
#=GS A0A260ZS27/775-875  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis latens; 
#=GS A0A0E0A5N3/214-309  AC A0A0E0A5N3
#=GS A0A0E0A5N3/214-309  OS Oryza glumipatula
#=GS A0A0E0A5N3/214-309  DE Uncharacterized protein
#=GS A0A0E0A5N3/214-309  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza glumipatula; 
#=GS R0GW62/233-330      AC R0GW62
#=GS R0GW62/233-330      OS Capsella rubella
#=GS R0GW62/233-330      DE Uncharacterized protein
#=GS R0GW62/233-330      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Capsella; Capsella rubella; 
#=GS D7LLA7/213-307      AC D7LLA7
#=GS D7LLA7/213-307      OS Arabidopsis lyrata subsp. lyrata
#=GS D7LLA7/213-307      DE Uncharacterized protein
#=GS D7LLA7/213-307      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis lyrata; Arabidopsis lyrata subsp. lyrata; 
#=GS A0A2G5U7V4/221-321  AC A0A2G5U7V4
#=GS A0A2G5U7V4/221-321  OS Caenorhabditis nigoni
#=GS A0A2G5U7V4/221-321  DE Uncharacterized protein
#=GS A0A2G5U7V4/221-321  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis nigoni; 
#=GS A0A2A6CB20/269-341  AC A0A2A6CB20
#=GS A0A2A6CB20/269-341  OS Pristionchus pacificus
#=GS A0A2A6CB20/269-341  DE RNA binding protein
#=GS A0A2A6CB20/269-341  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Diplogasteromorpha; Diplogasteroidea; Neodiplogasteridae; Pristionchus; Pristionchus pacificus; 
#=GF SQ 31
Q9LNV5/213-310              -----AGEMGTLESPD-DESIKTLYVGGLN----SRILEQDIRDQF------YAHGEIESIRILADKACAFVTYTSREGAEKAAQELSNRLVINGQRLKLTWGR---PKPDQDGA---------NQ
Q9ZW36/213-308              -----AGEMGTLESPE-DQSIRTLYVGGLN----SRVLEQDIRDQF------YAHGEIESIRILAEKACAFVTYTTREGAEKAAEELSNRLVVNGQRLKLTWGRPQVPKPDQ--------------
Q22412/221-321              ------AAAPTLSPPA-DTTITTLYIGNLGPSGAQQVTEKDLNDFF------YQYGDIRCLRVLTEKGCAFIEFTTREAAERAAERSFNKTFIKGKRLTIRWGEPQAKRAADNS------------
F4K5C2/211-283              ------GEMGTLEPPE-DESIKTLYVGGLN----SRIFEQDIHDHF------YAYGEMESIRVMAEDG--------KYDQSGSNQQQQGSIAHTG----------------------------LIS
Q9FL40/211-283              ------GEMGTLEPPE-DESIKTLYVGGLN----SRIFEQDIHDHF------YAYGEMESIRVMAEDG--------KYDQSGSNQQQQGSIAHTG----------------------------LIS
A8J9D3/98-213               ASNTHCRNTPTQLPGELDPQNTTLFVGGLS----AHVSEDALRGVF------GRYGEISYVKIPPGKGCGFVHFADRQAAEYAMQEVNGTIIGGSANYYNSNGQGQGQGGSGGGSGGQGSSSVWDP
Q4PGU6/214-317              -------SSVGLPPPS-DASVRSLFISNLPP---EHLEEPSIRQFFLDLAPPLQAQDIKSITLVRASNCAFVNFATRDHAELAARRCEPKMRLGDKEIRLMWGRSRPVKRNEENE-----------
A0A0P0WTE0/138-233          ------GEMPSLTPPD-DESIRTLYIGGLN----NRITEQDLRDQF------YAHGEIESIRMVLQRACAFVTYTTREGAEKAAEELANKLVIKGIRLKLMWGKPQAPKPEDD-------------
F6V766/218-315              ---TESAEQEAVAPPE-DQTITTLYIGGLG----EAVNEEDLRDQF------YHYGEIRSIHMATNQNYAFVQFTKRSDAETAAKRTAGRLMIKGKRIVVRWGKSQGSIKKG--------------
A0A078FRV1/214-308          ------GEMGTLESPD-DQSIKTLYVGGLN----SRILEQDLRDQF------YAYGEIESIRILADKACAFVTYTAREGAEKAAQELSNRLVVNGQRLKLMWGRPQAPRPDQ--------------
V4MG00/213-307              -----AGEMGTLESPE-DQSIKTLYVGGLN----SRVLEQDIRDQF------YAYGEIESIRILAEKACAFVTYTTREGAEKAAEELSNKLVVNGQRLKLTWGRPQVPKTD---------------
A0A1J3GFP1/213-307          -----AGEMGTLESPE-DQSIKTLYVGGLN----SRVLEQDLRDQF------YAYGEIESIRILAEKACAFVTYTTREGAEKAAEELSNKLVVNGQRLKLTWGRPQVPRND---------------
H3F4W2/238-310              ----------------------TLYVGGLGPD--GTINEKDLRDFF------YQYGEIRTLNVLGVKGCAFVTYTTRESAEMAAERSFNRINIKNRRLTIRWG-----------------------
R0GWK5/189-286              -----AGEMGTLESPE-DESIKTLYVGGLN----SRILEQDIRDQF------YAYGEIESIRILADKACAFVTYTSREGAEKAAQELSNRLVVNGQRLKLTWGR---PKPDQDSN---------LQ
K7VE89/212-310              ----KAGEMPSLTPPD-DETIRTLYIGGLD----SRITEQDLRDQF------YAHGEIESIRMVLQRAIAFVTYTTREGAEKAAEELANKLVIKGVRLKLMWGKPQAPKPEEDE------------
M4EPF9/214-308              ------GEMGTLESPD-DQSIKTLYVGGLN----SRILEQDLRDQF------YAYGEIESIRILADKACAFVTYTAREGAEKAAQELSNRLVVNGQRLKLMWGRPQAPRPDQ--------------
A0A3P6GIU9/214-308          ------GEMGTLESPD-DQSIKTLYVGGLN----SRILEQDLRDQF------YAYGEIESIRILADKACAFVTYTAREGAEKAAQELSNRLVVNGQRLKLMWGRPQAPRPDQ--------------
D7KH15/213-310              -----AGEMGTLESPD-DESIKTLYVGGLN----SRILEQDIRDQF------YAYGEIESIRILADKACAFVTYTSREGAEKAAQELANRLVVNGQRLKLTWGR---PKPDQDGS---------NQ
A0A0D3DJ96/214-308          ------GEMGTLESPD-DQSIKTLYVGGLN----SRILEQDLRDQF------YAYGEIESIRILADKACAFVTYTAREGAEKAAQELSNRLVVNGQRLKLMWGRPQAPRPDQ--------------
A0A2G5U7W1/219-319          ------AAAPTLSPPA-DTTITTLYIGNLGPNGPQQVTEKDLNDFF------YQYGDIRCLRVLTEKGCAFIEFTTREAAERAAERSFNKTFIKGRRLTIRWGEPQAKRAADNS------------
A8XRP6/224-324              ------AAAPTLSPPA-DTTITTLYIGNLGPNGPQQVTEKDLNDFF------YQYGDIRCLRVLTEKGCAFIEFTTREAAERAAERSFNKTFIKGRRLTIRWGEPQAKRAADNS------------
G0P902/221-321              ------AAAPTLSPPA-DTTITTLYIGNLGPAGPQQVTEKELNDVF------YQYGDIRCLRVLTEKGCAFIEYTTREAAERAAERAFNKTFIKGRKLSIRWGEPQAKRAADNS------------
E3M561/221-321              ------AAAPTLSPPA-DTTITTLYIGNLGPSGAQQVTEKDLNDFF------YQYGDIRCLRVLTEKGCAFIEFTTREAAERAAERSFNKTFIKGRRLTIRWGEPQAKRAADNS------------
A0A2H2I832/82-181           --------APSLAPPA-DTTITTLYIGNLGPAGPNQVTEKDLNDYF------YQFGDIRCLRVLTEKGCAFLEFTTRESAERAAERSFNKTFIKGRRLTIRWGEPQAKRAADNST-----------
A0A1I7UNB4/221-321          ------AAAPTLSPPA-DTTITTLYIGNLGPAGPQQVTEKDLNDFF------YQYGDIRCLRVLVQKGCAFIEFTTRESAERAADRSFNKTFIKGRRLTIRWGEPQAKRAADNS------------
A0A260ZS27/775-875          ------AAAPTLSPPA-DTTITTLYIGNLGPSGAQQVTEKDLNDFF------YQYGDIRCLRVLTEKGCAFIEFTTREAAERAAERSFNKTFIKGRRLTIRWGEPQAKRAADNS------------
A0A0E0A5N3/214-309          ------GEMPSLTPPD-DESIRTLYIGGLN----NRITEQDLRDQF------YAHGEIESIRMVLQRACAFVTYTTREGAEKAAEELANKLVIKGIRLKLMWGKPQAPKPEDD-------------
R0GW62/233-330              -----AGEMGTLESPE-DESIKTLYVGGLN----SRILEQDIRDQF------YAYGEIESIRILADKACAFVTYTSREGAEKAAQELSNRLVVNGQRLKLTWGR---PKPDQDSN---------LQ
D7LLA7/213-307              -----AGEMGTLESPE-DQSIKTLYVGGLN----SRVLEQDIRDQF------YAYGEIESIRILAEKACAFVTYTTREGAEKAAEELSNRLVVNGQRLKLTWGRPQVPKPD---------------
A0A2G5U7V4/221-321          ------AAAPTLSPPA-DTTITTLYIGNLGPNGPQQVTEKDLNDFF------YQYGDIRCLRVLTEKGCAFIEFTTREAAERAAERSFNKTFIKGRRLTIRWGEPQAKRAADNS------------
A0A2A6CB20/269-341          ----------------------TLYVGGLGPD--GTINEKDLRDFF------YQYGEIRTLNVLGVKGCAFVTYTTRESAEMAAERSFNRINIKNRRLTIRWG-----------------------
#=GC scorecons              000000444456356407346489878695100045639576574900000075787855666644656675466486477477554365545573653436733422333211000000000000
#=GC scorecons_70           ___________*__*__*__*_*****_*_______*_*_**_*_*______*_****__***___*_***___*_**_**_**____*_____*______**_______________________
#=GC scorecons_80           _________________*____***_*_*_________*_*__*_*______*_****____________*_____*__**_**__________________*_______________________
#=GC scorecons_90           ______________________***_*_*_________*______*_________*_*__________________*_________________________________________________
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