# STOCKHOLM 1.0
#=GF ID 3.30.70.330/FF/001014
#=GF DE Homologous to Drosophila SQD (Squid) protein
#=GF AC 3.30.70.330/FF/001014
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 44.919
#=GS Q4W5P0/2-108        AC Q4W5P0
#=GS Q4W5P0/2-108        OS Caenorhabditis elegans
#=GS Q4W5P0/2-108        DE Homologous to Drosophila SQD (Squid) protein
#=GS Q4W5P0/2-108        DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS Q8MXR6/2-108        AC Q8MXR6
#=GS Q8MXR6/2-108        OS Caenorhabditis elegans
#=GS Q8MXR6/2-108        DE Homologous to Drosophila SQD (Squid) protein
#=GS Q8MXR6/2-108        DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS H3E9J7/3-99         AC H3E9J7
#=GS H3E9J7/3-99         OS Pristionchus pacificus
#=GS H3E9J7/3-99         DE Uncharacterized protein
#=GS H3E9J7/3-99         DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Diplogasteromorpha; Diplogasteroidea; Neodiplogasteridae; Pristionchus; Pristionchus pacificus; 
#=GS A0A261ATQ1/2-107    AC A0A261ATQ1
#=GS A0A261ATQ1/2-107    OS Caenorhabditis latens
#=GS A0A261ATQ1/2-107    DE Uncharacterized protein
#=GS A0A261ATQ1/2-107    DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis latens; 
#=GS A0A261AHT7/2-107    AC A0A261AHT7
#=GS A0A261AHT7/2-107    OS Caenorhabditis remanei
#=GS A0A261AHT7/2-107    DE Uncharacterized protein
#=GS A0A261AHT7/2-107    DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis remanei; 
#=GS A0A2G5U241/9-108    AC A0A2G5U241
#=GS A0A2G5U241/9-108    OS Caenorhabditis nigoni
#=GS A0A2G5U241/9-108    DE Uncharacterized protein
#=GS A0A2G5U241/9-108    DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis nigoni; 
#=GS A8WZY6/9-108        AC A8WZY6
#=GS A8WZY6/9-108        OS Caenorhabditis briggsae
#=GS A8WZY6/9-108        DE Protein CBR-SQD-1
#=GS A8WZY6/9-108        DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis briggsae; 
#=GS A0A2A6CB22/624-724  AC A0A2A6CB22
#=GS A0A2A6CB22/624-724  OS Pristionchus pacificus
#=GS A0A2A6CB22/624-724  DE E3 ubiquitin-protein ligase
#=GS A0A2A6CB22/624-724  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Diplogasteromorpha; Diplogasteroidea; Neodiplogasteridae; Pristionchus; Pristionchus pacificus; 
#=GS E3NUW8/2-107        AC E3NUW8
#=GS E3NUW8/2-107        OS Caenorhabditis remanei
#=GS E3NUW8/2-107        DE Uncharacterized protein
#=GS E3NUW8/2-107        DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis remanei; 
#=GS E3MS94/2-103        AC E3MS94
#=GS E3MS94/2-103        OS Caenorhabditis remanei
#=GS E3MS94/2-103        DE CRE-SQD-1 protein
#=GS E3MS94/2-103        DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis remanei; 
#=GF SQ 10
Q4W5P0/2-108                EATDNKINGNASETIKENGHST----KGNEDKKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAAREQTIKGKSVEVKPAKSRE
Q8MXR6/2-108                EATDNKINGNASETIKENGHST----KGNEDKKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAAREQTIKGKSVEVKPAKSRE
H3E9J7/3-99                 --------------GTEDKHNVSDGLKGNEDRKIFVGGIAYDVTNEDLQTHFSQYGEVAQAQVKFDRMTGRSRGFAFVEFVNGESCKLALASREQAIKGKNVEVKPAKSRE
A0A261ATQ1/2-107            EATDNKINGNASETIKENGHST----KGNEDKKIFVGGISPEVNNEDLSSHFTQYGEVSQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAAREQTIKGKSVEVKPAKSR-
A0A261AHT7/2-107            EATDNKINGNASETIKENGHST----KGNEDKKIFVGGISPEVNNEDLSSHFTQYGEVSQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAAREQTIKGKSVEVKPAKSR-
A0A2G5U241/9-108            -------NGNASETIKENGHST----KGNEDKKIFVGGISPEVNNEDLSTHFTKFGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALSAREQTIKGKSVEVKPAKSRE
A8WZY6/9-108                -------NGNASETIKENGHST----KGNEDKKIFVGGISPEVNNEDLNSHFTKYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALSAREQTIKGKSVEVKPAKSRE
A0A2A6CB22/624-724          ---------NSSMNGTEDKHNVSDGLKGNEDRKIFVGGIAYDVTNEDLQTHFSQYGEVAQAQVKFDRMTGRSRGFAFVEFVNGESCKLALASREQAIKGKNVEVKPAKSR-
E3NUW8/2-107                EATDNKINGNASETIKENGHST----KGNEDKKIFVGGISPEVNNEDLSSHFTQYGEVSQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAAREQTIKGKSVEVKPAKSR-
E3MS94/2-103                EATDNKINGNASETIKENGHST----KGNEDKKIFVGGISPEVNNEDLSSHFTQYGEVSQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAAREQTIKGKSVSINF-----
#=GC scorecons              111111133545344596596500009999979999999647969999459967899969999979956999999999995699699999769996999969787777771
#=GC scorecons_70           ________________**_*______*************__**_****__**_**************__***********__**_******_********_*********_
#=GC scorecons_80           ________________*__*______*****_*******___*_****__**_*****_********__***********__**_******_***_****_*****_____
#=GC scorecons_90           ________________*__*______*****_*******___*_****__**__****_*****_**__***********__**_*****__***_****_*_*_______
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