# STOCKHOLM 1.0 #=GF ID 3.30.40.20/FF/000001 #=GF DE ORF1a polyprotein #=GF AC 3.30.40.20/FF/000001 #=GF TP FunFam #=GF DR CATH: v4.3 #=GF DR DOPS: 45.576 #=GS A0MD28/1830-1879 AC A0MD28 #=GS A0MD28/1830-1879 OS PRRSV SD 01-08 #=GS A0MD28/1830-1879 DE Replicase polyprotein 1ab #=GS A0MD28/1830-1879 DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; #=GS A0MD28/1830-1879 DR EC; 2.7.7.48; 3.4.19.12; 3.6.4.12; 3.6.4.13; #=GS Q04561/1847-1896 AC Q04561 #=GS Q04561/1847-1896 OS Lelystad virus #=GS Q04561/1847-1896 DE Replicase polyprotein 1ab #=GS Q04561/1847-1896 DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Variarterivirinae; Betaarterivirus; Eurpobartevirus; Betaarterivirus suid 1; #=GS Q04561/1847-1896 DR EC; 2.7.7.48; 3.4.19.12; 3.6.4.12; 3.6.4.13; #=GS U3NGL1/1806-1855 AC U3NGL1 #=GS U3NGL1/1806-1855 OS Porcine reproductive and respiratory syndrome virus #=GS U3NGL1/1806-1855 DE ORF1a polyprotein #=GS U3NGL1/1806-1855 DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; #=GS A0A0U2YQP0/1834-1883 AC A0A0U2YQP0 #=GS A0A0U2YQP0/1834-1883 OS Porcine reproductive and respiratory syndrome virus #=GS A0A0U2YQP0/1834-1883 DE Polyprotein 1a #=GS A0A0U2YQP0/1834-1883 DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; #=GS A0A1P8NRK3/1831-1880 AC A0A1P8NRK3 #=GS A0A1P8NRK3/1831-1880 OS Porcine reproductive and respiratory syndrome virus #=GS A0A1P8NRK3/1831-1880 DE ORF1a #=GS A0A1P8NRK3/1831-1880 DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; #=GS Q6UN13/1830-1879 AC Q6UN13 #=GS Q6UN13/1830-1879 OS Porcine reproductive and respiratory syndrome virus #=GS Q6UN13/1830-1879 DE Replicase polyprotein 1A #=GS Q6UN13/1830-1879 DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; #=GS G0TEG8/1819-1868 AC G0TEG8 #=GS G0TEG8/1819-1868 OS Porcine reproductive and respiratory syndrome virus #=GS G0TEG8/1819-1868 DE Replicase polyprotein 1a #=GS G0TEG8/1819-1868 DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; #=GS A0A1L3H034/1847-1896 AC A0A1L3H034 #=GS A0A1L3H034/1847-1896 OS Porcine reproductive and respiratory syndrome virus #=GS A0A1L3H034/1847-1896 DE Polyprotein 1a #=GS A0A1L3H034/1847-1896 DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; #=GS A0A077DAD8/1842-1891 AC A0A077DAD8 #=GS A0A077DAD8/1842-1891 OS Porcine reproductive and respiratory syndrome virus #=GS A0A077DAD8/1842-1891 DE Nonstructural protein #=GS A0A077DAD8/1842-1891 DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; #=GS A0A1P8NRD2/1837-1886 AC A0A1P8NRD2 #=GS A0A1P8NRD2/1837-1886 OS Porcine reproductive and respiratory syndrome virus #=GS A0A1P8NRD2/1837-1886 DE ORF1a #=GS A0A1P8NRD2/1837-1886 DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; #=GS A0A0S2IKF5/1822-1871 AC A0A0S2IKF5 #=GS A0A0S2IKF5/1822-1871 OS Porcine reproductive and respiratory syndrome virus #=GS A0A0S2IKF5/1822-1871 DE ORF1a #=GS A0A0S2IKF5/1822-1871 DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; #=GS A0A140GJK3/1792-1841 AC A0A140GJK3 #=GS A0A140GJK3/1792-1841 OS Porcine reproductive and respiratory syndrome virus #=GS A0A140GJK3/1792-1841 DE Pp1a #=GS A0A140GJK3/1792-1841 DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; #=GS A7UKW2/1847-1896 AC A7UKW2 #=GS A7UKW2/1847-1896 OS Porcine reproductive and respiratory syndrome virus #=GS A7UKW2/1847-1896 DE Polyprotein #=GS A7UKW2/1847-1896 DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; #=GS A0A0U3AH00/1846-1895 AC A0A0U3AH00 #=GS A0A0U3AH00/1846-1895 OS Porcine reproductive and respiratory syndrome virus #=GS A0A0U3AH00/1846-1895 DE Polyprotein 1a #=GS A0A0U3AH00/1846-1895 DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; #=GS A0A1P8NRG7/1797-1846 AC A0A1P8NRG7 #=GS A0A1P8NRG7/1797-1846 OS Porcine reproductive and respiratory syndrome virus #=GS A0A1P8NRG7/1797-1846 DE ORF1a #=GS A0A1P8NRG7/1797-1846 DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; #=GS A0A1P8NRM4/1831-1880 AC A0A1P8NRM4 #=GS A0A1P8NRM4/1831-1880 OS Porcine reproductive and respiratory syndrome virus #=GS A0A1P8NRM4/1831-1880 DE ORF1a #=GS A0A1P8NRM4/1831-1880 DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; #=GS E9P7V6/1822-1871 AC E9P7V6 #=GS E9P7V6/1822-1871 OS Porcine reproductive and respiratory syndrome virus #=GS E9P7V6/1822-1871 DE ORF1a polyprotein #=GS E9P7V6/1822-1871 DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; #=GS E9P7U0/1773-1822 AC E9P7U0 #=GS E9P7U0/1773-1822 OS Porcine reproductive and respiratory syndrome virus #=GS E9P7U0/1773-1822 DE ORF1a polyprotein #=GS E9P7U0/1773-1822 DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; #=GS A0A2D3HIT2/1694-1743 AC A0A2D3HIT2 #=GS A0A2D3HIT2/1694-1743 OS Porcine reproductive and respiratory syndrome virus 1 #=GS A0A2D3HIT2/1694-1743 DE ORF1a polyprotein #=GS A0A2D3HIT2/1694-1743 DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Variarterivirinae; Betaarterivirus; Eurpobartevirus; Betaarterivirus suid 1; #=GS A0A0U2V7J4/1800-1849 AC A0A0U2V7J4 #=GS A0A0U2V7J4/1800-1849 OS Porcine reproductive and respiratory syndrome virus #=GS A0A0U2V7J4/1800-1849 DE ORF1ab protein #=GS A0A0U2V7J4/1800-1849 DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; #=GF SQ 20 A0MD28/1830-1879 KETKLSDLSRHFAGPSVPLGDIKLSPAIVPDVTSIPSDLASLLASVPVME Q04561/1847-1896 KETKLSDLSRHFAGPSVPLGDIKLSPAIIPDVTSIPSDLASLLASVPVVE U3NGL1/1806-1855 KETKLSDLSRHFAGPSVPLGDIKLSPAIIPDVTSIPSDLASLLASVPVME A0A0U2YQP0/1834-1883 KETKLSTLSRYFAGPSVPLGDIKLSPTIIPDVTSIPSDLSSLLASVPVME A0A1P8NRK3/1831-1880 KETKLSDLSRHFAGPSVPLGDIKLGPAIVPDVTSIPSDLASLLASVPVME Q6UN13/1830-1879 KETKLSDLSRHFAGPSVPLGDIKLSPAIIPDVTSIPSDLASLLASVPVLE G0TEG8/1819-1868 KETKLSDLSKHFAGPSVPLGDIKLSPAIIPDVTSVPSDLASLLASVPVME A0A1L3H034/1847-1896 KETKLSDLSRHFAGPSVPLGDIKLSPAIIPDVTSIPSDLASLLASVPVVE A0A077DAD8/1842-1891 KETKLSDLSEHFAGPSVPLGDIKLSPAIIPDVTSIPSDLASLLASVPAAE A0A1P8NRD2/1837-1886 RETKLSDLSKHFAGPSVPLGDIKLSPTIIPDVTSVPSDLASLLASVPVME A0A0S2IKF5/1822-1871 RETKLSDLSKHFAGPSVPLGDIKLSPAIIPDVTSIPSDLASLLSSVPAME A0A140GJK3/1792-1841 KETKLSDLSRHFAGPSVPLGDIKLSPAIIPDVTFIPSDLASLLASVPVME A7UKW2/1847-1896 KETKLSDLSRHFAGPSVPLGNIKLSPAIIPDVTSIPSDLASLLASVPVVE A0A0U3AH00/1846-1895 KETKLSDLSKYFAGPSVPLGDIKLSPAIIPDVTSVPSDLASLLASIPVME A0A1P8NRG7/1797-1846 KETRLSDLSRHFAGPSVPLGDVKLSPAIVPDVTSIPSDLASLLASVPVAE A0A1P8NRM4/1831-1880 KETKLSDLSRHFAGPSVPLGDIKLSPAIIPDVTSIPSDLASLLASVPVVE E9P7V6/1822-1871 KETKLSDLSRYFAGPSVPLGDIKLSPAIIPDVTSIPSDLESFLASVPVTE E9P7U0/1773-1822 KETKLSDLSRHFAGPSVPLGDIKLSPAIIPDVTSIPSDLASLLASVPAME A0A2D3HIT2/1694-1743 KETKLSELSRYFAGPSVPLGDVKLSPAIIPDVASIPSDLASLLASVPVME A0A0U2V7J4/1800-1849 KETRLSDLSRHFAGPSVPLGDIKLSPAIIPDVTTIPSDLASLLASVPVME #=GC scorecons 89989979977999999999889989798999877999979898989759 #=GC scorecons_70 ************************************************_* #=GC scorecons_80 *********_**************************************_* #=GC scorecons_90 ******_**__***************_*_****__****_*******__* //