# STOCKHOLM 1.0
#=GF ID 3.30.200.20/FF/000607
#=GF DE Nuclear receptor-binding protein 2a
#=GF AC 3.30.200.20/FF/000607
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 70.001
#=GS G5ED17/26-123      AC G5ED17
#=GS G5ED17/26-123      OS Caenorhabditis elegans
#=GS G5ED17/26-123      DE Uncharacterized protein
#=GS G5ED17/26-123      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS W4YWG0/65-172      AC W4YWG0
#=GS W4YWG0/65-172      OS Strongylocentrotus purpuratus
#=GS W4YWG0/65-172      DE Uncharacterized protein
#=GS W4YWG0/65-172      DR ORG; Eukaryota; Metazoa; Echinodermata; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae; Strongylocentrotus; Strongylocentrotus purpuratus; 
#=GS F1Q5L0/34-122      AC F1Q5L0
#=GS F1Q5L0/34-122      OS Danio rerio
#=GS F1Q5L0/34-122      DE Nuclear receptor-binding protein 2a
#=GS F1Q5L0/34-122      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Actinopterygii; Actinopteri; Neopterygii; Teleostei; Otomorpha; Ostariophysi; Cypriniphysae; Cypriniformes; Cyprinoidei; Cyprinidae; Danio; Danio rerio; 
#=GS A0A016SMN1/45-142  AC A0A016SMN1
#=GS A0A016SMN1/45-142  OS Ancylostoma ceylanicum
#=GS A0A016SMN1/45-142  DE Uncharacterized protein
#=GS A0A016SMN1/45-142  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Strongylida; Ancylostomatoidea; Ancylostomatidae; Ancylostomatinae; Ancylostoma; Ancylostoma ceylanicum; 
#=GS A0A0R3PMZ3/25-123  AC A0A0R3PMZ3
#=GS A0A0R3PMZ3/25-123  OS Angiostrongylus costaricensis
#=GS A0A0R3PMZ3/25-123  DE Uncharacterized protein
#=GS A0A0R3PMZ3/25-123  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Strongylida; Metastrongyloidea; Angiostrongylidae; Angiostrongylus; Angiostrongylus costaricensis; 
#=GS A0A3P8AI34/25-122  AC A0A3P8AI34
#=GS A0A3P8AI34/25-122  OS Heligmosomoides polygyrus
#=GS A0A3P8AI34/25-122  DE Uncharacterized protein
#=GS A0A3P8AI34/25-122  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Strongylida; Trichostrongyloidea; Heligmosomatidae; Heligmosomoides; Heligmosomoides polygyrus; 
#=GS A0A0B1SXB9/25-125  AC A0A0B1SXB9
#=GS A0A0B1SXB9/25-125  OS Oesophagostomum dentatum
#=GS A0A0B1SXB9/25-125  DE Uncharacterized protein
#=GS A0A0B1SXB9/25-125  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Strongylida; Strongyloidea; Chabertiidae; Oesophagostominae; Oesophagostomum; Oesophagostomum dentatum; 
#=GS A0A0N4YR99/25-122  AC A0A0N4YR99
#=GS A0A0N4YR99/25-122  OS Nippostrongylus brasiliensis
#=GS A0A0N4YR99/25-122  DE Nuclear receptor-binding protein homolog (inferred by orthology to a D. melanogaster protein)
#=GS A0A0N4YR99/25-122  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Strongylida; Trichostrongyloidea; Heligmonellidae; Nippostrongylinae; Nippostrongylus; Nippostrongylus brasiliensis; 
#=GS A0A0N4X2W5/25-122  AC A0A0N4X2W5
#=GS A0A0N4X2W5/25-122  OS Haemonchus placei
#=GS A0A0N4X2W5/25-122  DE Uncharacterized protein
#=GS A0A0N4X2W5/25-122  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Strongylida; Trichostrongyloidea; Haemonchidae; Haemonchus; Haemonchus placei; 
#=GS A0A0K0D9X4/25-122  AC A0A0K0D9X4
#=GS A0A0K0D9X4/25-122  OS Angiostrongylus cantonensis
#=GS A0A0K0D9X4/25-122  DE Uncharacterized protein
#=GS A0A0K0D9X4/25-122  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Strongylida; Metastrongyloidea; Angiostrongylidae; Angiostrongylus; Angiostrongylus cantonensis; 
#=GS A0A2A2LJ11/90-188  AC A0A2A2LJ11
#=GS A0A2A2LJ11/90-188  OS Diploscapter pachys
#=GS A0A2A2LJ11/90-188  DE Uncharacterized protein
#=GS A0A2A2LJ11/90-188  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Diploscapter; Diploscapter pachys; 
#=GS A0A183FDH1/25-122  AC A0A183FDH1
#=GS A0A183FDH1/25-122  OS Heligmosomoides polygyrus bakeri
#=GS A0A183FDH1/25-122  DE Uncharacterized protein
#=GS A0A183FDH1/25-122  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Strongylida; Trichostrongyloidea; Heligmosomatidae; Heligmosomoides; Heligmosomoides polygyrus; Heligmosomoides polygyrus bakeri; 
#=GS A0A0C2FAR8/45-142  AC A0A0C2FAR8
#=GS A0A0C2FAR8/45-142  OS Ancylostoma duodenale
#=GS A0A0C2FAR8/45-142  DE Uncharacterized protein
#=GS A0A0C2FAR8/45-142  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Strongylida; Ancylostomatoidea; Ancylostomatidae; Ancylostomatinae; Ancylostoma; Ancylostoma duodenale; 
#=GS G0NKL1/25-122      AC G0NKL1
#=GS G0NKL1/25-122      OS Caenorhabditis brenneri
#=GS G0NKL1/25-122      DE Uncharacterized protein
#=GS G0NKL1/25-122      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis brenneri; 
#=GS A0A2G5VH29/27-124  AC A0A2G5VH29
#=GS A0A2G5VH29/27-124  OS Caenorhabditis nigoni
#=GS A0A2G5VH29/27-124  DE Uncharacterized protein
#=GS A0A2G5VH29/27-124  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis nigoni; 
#=GS A0A1I7U4D0/27-129  AC A0A1I7U4D0
#=GS A0A1I7U4D0/27-129  OS Caenorhabditis tropicalis
#=GS A0A1I7U4D0/27-129  DE Uncharacterized protein
#=GS A0A1I7U4D0/27-129  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis tropicalis; 
#=GS A0A2H2IHP6/22-124  AC A0A2H2IHP6
#=GS A0A2H2IHP6/22-124  OS Caenorhabditis japonica
#=GS A0A2H2IHP6/22-124  DE Uncharacterized protein
#=GS A0A2H2IHP6/22-124  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis japonica; 
#=GS A8XXY9/27-124      AC A8XXY9
#=GS A8XXY9/27-124      OS Caenorhabditis briggsae
#=GS A8XXY9/27-124      DE Protein CBR-HPO-11
#=GS A8XXY9/27-124      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis briggsae; 
#=GS G0PB38/25-122      AC G0PB38
#=GS G0PB38/25-122      OS Caenorhabditis brenneri
#=GS G0PB38/25-122      DE Uncharacterized protein
#=GS G0PB38/25-122      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis brenneri; 
#=GS A0A016SLK5/45-142  AC A0A016SLK5
#=GS A0A016SLK5/45-142  OS Ancylostoma ceylanicum
#=GS A0A016SLK5/45-142  DE Uncharacterized protein
#=GS A0A016SLK5/45-142  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Strongylida; Ancylostomatoidea; Ancylostomatidae; Ancylostomatinae; Ancylostoma; Ancylostoma ceylanicum; 
#=GS A0A2G5VH12/27-124  AC A0A2G5VH12
#=GS A0A2G5VH12/27-124  OS Caenorhabditis nigoni
#=GS A0A2G5VH12/27-124  DE Uncharacterized protein
#=GS A0A2G5VH12/27-124  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis nigoni; 
#=GS A0A016SMJ8/25-122  AC A0A016SMJ8
#=GS A0A016SMJ8/25-122  OS Ancylostoma ceylanicum
#=GS A0A016SMJ8/25-122  DE Uncharacterized protein
#=GS A0A016SMJ8/25-122  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Strongylida; Ancylostomatoidea; Ancylostomatidae; Ancylostomatinae; Ancylostoma; Ancylostoma ceylanicum; 
#=GF SQ 22
G5ED17/26-123              -ADGAEEILEESPDKRWSKRREQVKQRDVPGIDVAYLAMDNETGNEVVWNEVQFSERKNFRAQEEKINAVFDNLTQLVHTNLVKFHKYWTDS----KSEKPRI-----
W4YWG0/65-172              ESEDEREILEESPCGRWQKRRVKVTQRDVPGIDVAYLAMDMEEGREVVWNEVQFSARRDFKAQEDILHLLLHHLIHLQHLLIVKLHNHCHDTMLHIDQLHIRVIFITE
F1Q5L0/34-122              -------------CGCSSRRRQ--NQGNVPGIESAYLAMDTEEGVEVVWNEVQFSDKKVFKSFEERIREMFENLMQVEHPNIVKFHKYWLDM----RESRARVIFITE
A0A016SMN1/45-142          -GDAAEEILEESPCKRWSKRREQVKQRDVPGIDVAYLAMDNETGNEVVWNEVQFSERKNFRAQEEKINAVFDNLTQLVHTNLVKFHKYWTDA----KSEKPRI-----
A0A0R3PMZ3/25-123          -GDAAEDILEESPCKRWSKRREQVKQRDVPGIDVAYLAMDNETGNEVVWNEVQFSERKNFRAQEEKINAVFDKLTQLVHTNLVKFHKYWTDA----KPEKPRII----
A0A3P8AI34/25-122          -GDAAEDILEESPCKRWSKRREQVKQRDVPGIDVAYLAMDNETGNEVVWNEVQFSERKNFRAQEEKINAVFDNLTQLVHTNLVKFHKYWTDA----KSEKPRI-----
A0A0B1SXB9/25-125          -GDAAEEILEESPCKRWSKRREQVKQRDVPGIDVAYLAMDNETGNEVVWNEVQFSERKNFRAQEEKINAVFDNLTQLVHTNLVKFHKYWTDA----KSEKPRIIFI--
A0A0N4YR99/25-122          -GDAAEDILEESPCKRWSKRREQVKQRDVPGIDVAYLAMDNETGNEVVWNEVQFSERKNFRAQEEKINTVFDNLTQLVHTNLVKFHKYWTDA----KSEKPRI-----
A0A0N4X2W5/25-122          -GDAAEDILEESPCKRWSKRREQVKQRDVPGIDVAYLAMDNETGNEVVWNEVQFSERKNFRAQEEKINAVFDNLTQLVHTNLVKFHKYWTDA----KSEKPRI-----
A0A0K0D9X4/25-122          -GDAAEDILEESPCKRWSKRREQVKQRDVPGIDVAYLAMDNETGNEVVWNEVQFSERKNFRAQEEKINAVFDKLTQLVHTNLVKFHKYWTDA----KSEKPRI-----
A0A2A2LJ11/90-188          EDDGTTEILEESPDRRWSKRREQVKQRDVPGIDVAYLAMDNETGNEVVWNEVQFSERKNFRAQEEKINAVFDSLTQLVHTNLVKFHKYWTDA----KSDKPRI-----
A0A183FDH1/25-122          -GDAAEDILEESPCKRWSKRREQVKQRDVPGIDVAYLAMDNETGNEVVWNEVQFSERKNFRAQEEKINAVFDNLTQLVHTNLVKFHKYWTDA----KSEKPRI-----
A0A0C2FAR8/45-142          -GDAAEEILEESPCKRWSKRREQVKQRDVPGIDVAYLAMDNETGNEVVWNEVQFSERKNFRAQEEKINAVFDNLTQLVHTNLVKFHKYWTDA----KSEKPRI-----
G0NKL1/25-122              -ADAAEEILEESPDKRWSKRREQVKQRDVPGIDVAYLAMDNETGNEVVWNEVQFSERKNFKTQEEKINAVFDNLTQLVHTNLVKFHKYWTDS----KSEKPRI-----
A0A2G5VH29/27-124          -ADGAEEILEESPDKRWSKRREQVKQRDVPGIDVAYLAMDNETGNEVVWNEVQFSERKNFRAQEEKINAVFDNLTQLVHTNLVKFHKYWTDS----KSEKPRI-----
A0A1I7U4D0/27-129          -ADAAEEILEESPDKRWSKRREQVKQRDVPGIDVAYLAMDNETGNEVVWNEVQFSERKNFRAQEEKINAVFDNLTQLVHTNLVKFHKYWTDS----KSEKPRIIFITE
A0A2H2IHP6/22-124          -SDSDADGAEESPDKRWSKRREQVKQRDVPGIDVAYLAMDNETGNEVVWNEVQFSERKNFRAQEEKINAVFDNLTQLVHTNLVKFHKYWTDS----KSEKPRIIFITE
A8XXY9/27-124              -ADGAEEILEESPDKRWSKRREQVKQRDVPGIDVAYLAMDNETGNEVVWNEVQFSERKNFRAQEEKINAVFDNLTQLVHTNLVKFHKYWTDS----KSEKPRI-----
G0PB38/25-122              -ADAAEEILEESPDKRWSKRREQVKQRDVPGIDVAYLAMDNETGNEVVWNEVQFSERKNFKTQEEKINAVFDNLTQLVHTNLVKFHKYWTDS----KSEKPRI-----
A0A016SLK5/45-142          -GDAAEEILEESPCKRWSKRREQVKQRDVPGIDVAYLAMDNETGNEVVWNEVQFSERKNFRAQEEKINAVFDNLTQLVHTNLVKFHKYWTDA----KSEKPRI-----
A0A2G5VH12/27-124          -ADGAEEILEESPDKRWSKRREQVKQRDVPGIDVAYLAMDNETGNEVVWNEVQFSERKNFRAQEEKINAVFDNLTQLVHTNLVKFHKYWTDS----KSEKPRI-----
A0A016SMJ8/25-122          -GDAAEEILEESPCKRWSKRREQVKQRDVPGIDVAYLAMDNETGNEVVWNEVQFSERKNFRAQEEKINAVFDNLTQLVHTNLVKFHKYWTDA----KSEKPRI-----
#=GC scorecons             035333455666655667799546597799997699999959595999999999967759766975754676695774956699797775940000654659711111
#=GC scorecons_70          _______________******____***************_*_*_**********_**_***_**_*__**_**_**_*_*********_*________*_**_____
#=GC scorecons_80          __________________***____*_******_******_*_*_**********_**_*___**_*___*__*_**_*___*******_*__________**_____
#=GC scorecons_90          ___________________**____*__****__******_*_*_**********____*___*_________*____*___**_*____*__________*______
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