# STOCKHOLM 1.0
#=GF ID 2.70.170.10/FF/000057
#=GF DE Ligand-Gated ion Channel
#=GF AC 2.70.170.10/FF/000057
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 95.736
#=GS P34271/38-276      AC P34271
#=GS P34271/38-276      OS Caenorhabditis elegans
#=GS P34271/38-276      DE Acetylcholine receptor-like protein cup-4
#=GS P34271/38-276      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS P34271/38-276      DR GO; GO:0005216; GO:0006897; GO:0008340; GO:0015464; GO:0030100; GO:0030659; GO:0031410; GO:0061771; GO:1901046; GO:1901562; 
#=GS Q9N4R6/17-259      AC Q9N4R6
#=GS Q9N4R6/17-259      OS Caenorhabditis elegans
#=GS Q9N4R6/17-259      DE Ligand-Gated ion Channel
#=GS Q9N4R6/17-259      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS Q9N4R6/17-259      DR GO; GO:0005737; GO:0006897; GO:0008340; 
#=GS A8XF54/39-281      AC A8XF54
#=GS A8XF54/39-281      OS Caenorhabditis briggsae
#=GS A8XF54/39-281      DE Acetylcholine receptor-like protein cup-4
#=GS A8XF54/39-281      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis briggsae; 
#=GS A8XF54/39-281      DR GO; GO:0030100; GO:0030659; 
#=GS Q17999/24-272      AC Q17999
#=GS Q17999/24-272      OS Caenorhabditis elegans
#=GS Q17999/24-272      DE Ligand-Gated ion Channel
#=GS Q17999/24-272      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS A5JYS3/21-255      AC A5JYS3
#=GS A5JYS3/21-255      OS Caenorhabditis elegans
#=GS A5JYS3/21-255      DE Ligand-Gated ion Channel
#=GS A5JYS3/21-255      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS Q4W520/23-261      AC Q4W520
#=GS Q4W520/23-261      OS Caenorhabditis elegans
#=GS Q4W520/23-261      DE Ligand-Gated ion Channel
#=GS Q4W520/23-261      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS Q9XTY8/23-232      AC Q9XTY8
#=GS Q9XTY8/23-232      OS Caenorhabditis elegans
#=GS Q9XTY8/23-232      DE Ligand-Gated ion Channel
#=GS Q9XTY8/23-232      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS H3F9J4/43-260      AC H3F9J4
#=GS H3F9J4/43-260      OS Pristionchus pacificus
#=GS H3F9J4/43-260      DE Uncharacterized protein
#=GS H3F9J4/43-260      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Diplogasteromorpha; Diplogasteroidea; Neodiplogasteridae; Pristionchus; Pristionchus pacificus; 
#=GS A0A2G5TC44/31-263  AC A0A2G5TC44
#=GS A0A2G5TC44/31-263  OS Caenorhabditis nigoni
#=GS A0A2G5TC44/31-263  DE Uncharacterized protein
#=GS A0A2G5TC44/31-263  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis nigoni; 
#=GS A8XES1/28-260      AC A8XES1
#=GS A8XES1/28-260      OS Caenorhabditis briggsae
#=GS A8XES1/28-260      DE Protein CBR-LGC-26
#=GS A8XES1/28-260      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis briggsae; 
#=GS A0A2G5TC56/28-260  AC A0A2G5TC56
#=GS A0A2G5TC56/28-260  OS Caenorhabditis nigoni
#=GS A0A2G5TC56/28-260  DE Uncharacterized protein
#=GS A0A2G5TC56/28-260  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis nigoni; 
#=GS A0A454XPC4/43-260  AC A0A454XPC4
#=GS A0A454XPC4/43-260  OS Pristionchus pacificus
#=GS A0A454XPC4/43-260  DE Cup-4
#=GS A0A454XPC4/43-260  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Diplogasteromorpha; Diplogasteroidea; Neodiplogasteridae; Pristionchus; Pristionchus pacificus; 
#=GS A0A2G5UKU5/39-281  AC A0A2G5UKU5
#=GS A0A2G5UKU5/39-281  OS Caenorhabditis nigoni
#=GS A0A2G5UKU5/39-281  DE Uncharacterized protein
#=GS A0A2G5UKU5/39-281  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis nigoni; 
#=GF SQ 13
P34271/38-276              SFFNKSYSEHQSALEQKIFRGYNPKNRPMKNASFPTIVDVHWHIIHVS-INQREQTMTVHGHIYMRWFDEFLVWDPKDFNNIQYARVKK------WQVWQPKIKVSNSASGLGSA---FDFSTSAHVIIQMMGKD-----RAKVEMYPTFSIKVGCAFDFTDYPYDLNKCAINL------FSTSTMADVQL-QNLYAIPPTLSFGWE--EQKMKRIISDFKIQNVSSSALYYTNGNITSSAPITGFDLGSTWSMLAVTVSFVR-----------
Q9N4R6/17-259              FGNAASQSTDERKLEAQLLKGYNSKVRPVKVESTVTQVAVYLNIAHVEKVDEHEQTALVHGHLMASWTDEYLKWERKA-TNISTLSIAS------SKLWQPALQLYNSARG-NSW---SLYLTGLPAIV---------YNTGKVWSRGTFSFFVTCQFDFTNWPYDQQSCPIVITDWVYGLGQVNLSDPAT-AAGYGK-PTIRLSYDPIDETNKRHVGGWEVIDSWKKHCYWGPKGCLDAEPDGNPDW--YWSLLEFGITLKRHLPY-------
A8XF54/39-281              -FFNRTYSAHQSDLEKRIFRGYDIKKRPVKNASVPTVVDVHWHVIHVS-INQKEQTMTLHGHIYMRWYDEYLVWDPKDFAGIHYARVKK------WQVWQPKIRVSNSASGLASA---FDFSTSAHVIIQMVEKD-----RAKVEMYPTFSIKVGCMFDFGDFPYDQNKCSVNL------FATDTMAEVQL-QNLYNIPPTLSFGWE--EQKMKRIISDFKILNVSASQFYYGSGNVSKTAPVTGFELGNTWSMLAVNVDFVRHSPY------F
Q17999/24-272              ESERHQAYLDHRKLKEDVLGPLD-GSMPSELPVFIG---AQLKLDHISRVDEKTGFLTLALTVKFMWSDERLQWDPSHYSGFTRTRLEFVDFWL-YQIWKPRIYMTNTYERRQSKTIDLLSNTLVEMDI---------HSKGFVMTTTKILLKTFCFLDFKGYPHDFQNCSFSF------IPNMNANDIFLGSSMLKAKFTKDFT----DPQQVVRVQDFQINDVVTEDLYLFMNRIVLHDLTREPRS-LVRSFVSFTIVLQRKNVYVHLQLYA
A5JYS3/21-255              TG---KSFTVLTKLRSDLFKNYN-GSMPVGKGEYLEAT-PSLEVGFIHFIDDDHGFMSVVINAELTWIDERLKWNPANYSGVREIVEKTFEFRKDNNCWMPIVKYRSYDRRYSEL--DLLEFSDARTLI---------SYKGEIKTALQTMVTTKCQFSFGEYPNDYQNCSIML------IPNQNADEFRF-VSPNGYCNPKFEN----LEHRAVRVHDLHLMGVESNIFYTFANTYFTAEEVTGFEY-MAKTEFRFNLMFKR-----------
Q4W520/23-261              PGEMEKRYEAETKLREDITKRFD-DTMPIKKDGYLQLI-PLLHVDHIHDIQDEQGVLKMALTFTFTWMDERLMWNPSNYSGIRTFSTTRHEMWR-KKFWTPTLMMTDVPNSRRPS--DVFKPFDMDIYI---------SSSGMVRTSARMMLTIPCRTGFGSYPNDYKNCTFTL------MSPYYADQFRF-AQWGGAEFTRYL-----MSSRVTDVLDFQLINIDTRNYYMFLGSEVVDDFSKFKPR-HCRSFYRYNLVLKRVNK--------
Q9XTY8/23-232              ------GLSKEQQLEKQLMVKYNYKVRPVKSEATVTQVNVFLSIAHVEKVDEHEQTALVHGHIWATWIDEYMQWDAKK-ENVTKLTISA------HSLWQPALALYNSARG-NSW---HLYMGAMPATV---------YSTGKVWSTGTFSFYVTCQFDFTNWPFDQQSCPIVIADWVYNLNQVNLSDPYI-LKEYGK-PSIRLSYDPIEKSDKRHVAGWEVMDAWKKHCYWGPKGCK------------------------------------
H3F9J4/43-260              -------AEDQTKLQMAIFRNYNRNNRPVVKDDDSTEVELHLHVTHVS-FNQREQTMTVHGHMYMTWLDETLFWDPKDYGGVTTTNVKK------WQIWMPELRVTNSVNGIYSM---HEISRNAHITVQTLTTDGKTYTKSRVETYPTFSMKVGCLMDFSDYPYDVHYCGVRL------YTPKKINQVKL-RVYKGMAPTMFLSWS--NESQKLTSGDFTINRASNNISWYRYGVTDDLEPLT------------------------------
A0A2G5TC44/31-263          -----------RDFQNQILTGYNSKIRPVKAETTVTQVTVFLNIAHVEKVDEAEQTALVHGHLWASWTDEYLQWDRAK-TNVTKITLPS------HRIWQPALALYNSARG-NTW---HLYMAGMPATV---------YFNGKVWSSGTFSFFVTCQFDFENWPFDKQNCPIVIADWVYGLAQVNLSDPNM-ISEYAK-PSIRLSYDPLERKNKRHVGGWEVMDAWKKHCYWGPKGCKEDQPEGEPDW--YWSLLEFGIVLKRHLPY------F
A8XES1/28-260              -----------RDFQNQILTGYNSKIRPVKAETTVTQVTVFLNIAHVEKVDEAEQTALVHGHLWASWTDEYLQWDRAK-TNVTKITLPS------HRIWQPALALYNSARG-NTW---HLYMAGMPATV---------YFNGKVWSSGTFSFFVTCQFDFENWPFDKQNCPIVIADWVYGLAQVNLSDPNM-ISEYAK-PSIRLSYDPLERKNKRHVGGWEVMDAWKKHCYWGPKGCKEDQPEGEPDW--YWSLLEFGIVLKRHLPY------F
A0A2G5TC56/28-260          -----------RDFQNQILTGYNSKIRPVKAETTVTQVTVFLNIAHVEKVDEAEQTALVHGHLWASWTDEYLQWDRAK-TNVTKITLPS------HRIWQPALALYNSARG-NTW---HLYMAGMPATV---------YFNGKVWSSGTFSFFVTCQFDFENWPFDKQNCPIVIADWVYGLAQVNLSDPNM-ISEYAK-PSIRLSYDPLERKNKRHVGGWEVMDAWKKHCYWGPKGCKEDQPEGEPDW--YWSLLEFGIVLKRHLPY------F
A0A454XPC4/43-260          -------AEDQTKLQMAIFRNYNRNNRPVVKDDDSTEVELHLHVTHVS-FNQREQTMTVHGHMYMTWLDETLFWDPKDYGGVTTTNVKK------WQIWMPELRVTNSVNGIYSM---HEISRNAHITVQTLTTDGKTYTKSRVETYPTFSMKVGCLMDFSDYPYDVHYCGVRL------YTPKKINQVKL-RVYKGMAPTMFLSWS--NESQKLTSGDFTINRASNNISWYRYGVTDDLEPLT------------------------------
A0A2G5UKU5/39-281          -FFNRTYSAHQSDLEKRIFRGYDIKKRPVKNASVPTVVDVHWHVIHVS-INQKEQTMTLHGHIYMRWYDEYLVWDPKDFAGIHYARVKK------WQVWQPKIRVSNSASGLASA---FDFSTSAHVIIQMVEKD-----RAKVEMYPTFSIKVGCMFDFGDFPYDQNKCSVNL------FATDTMAEVQL-QNLYNIPPTLSFGWE--EQKMKRIISDFKILNVSASQFYYGSGNVSKTAPVTGFELGNTWSMLAVNVDFVRHSPY------F
#=GC scorecons             0000011222245753465447615359653433452525464637741555366544655643449399483975443456434344300000035494936343754461352000333333444471000010003245483434555436393579455959354945360000004442444543503323431553354220044435436365463453443473334332223423222100134232323232511120000000
#=GC scorecons_70          _____________*___*___**____**____________*_*_**___________*_______*_**_*_**______*________________*_*_____*_____________________*______________*_________*_*__**___*_*___*________________________________________________*___________*___________________________________________
#=GC scorecons_80          _____________*_______*_____*_________________**___________________*_**_*_*________________________*_*_____*____________________________________*___________*___*___*_*___*____________________________________________________________*___________________________________________
#=GC scorecons_90          ___________________________*______________________________________*_**_*_*________________________*_*__________________________________________*___________*___*___*_*___*________________________________________________________________________________________________________
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