# STOCKHOLM 1.0
#=GF ID 2.40.10.10/FF/000119
#=GF DE ORF1a polyprotein
#=GF AC 2.40.10.10/FF/000119
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 49.436
#=GS Q04561/1701-1773      AC Q04561
#=GS Q04561/1701-1773      OS Lelystad virus
#=GS Q04561/1701-1773      DE Replicase polyprotein 1ab
#=GS Q04561/1701-1773      DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Variarterivirinae; Betaarterivirus; Eurpobartevirus; Betaarterivirus suid 1; 
#=GS Q04561/1701-1773      DR EC; 2.7.7.48; 3.4.19.12; 3.6.4.12; 3.6.4.13; 
#=GS A0MD28/1684-1756      AC A0MD28
#=GS A0MD28/1684-1756      OS PRRSV SD 01-08
#=GS A0MD28/1684-1756      DE Replicase polyprotein 1ab
#=GS A0MD28/1684-1756      DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; 
#=GS A0MD28/1684-1756      DR EC; 2.7.7.48; 3.4.19.12; 3.6.4.12; 3.6.4.13; 
#=GS A0A1P8NRR6/1696-1768  AC A0A1P8NRR6
#=GS A0A1P8NRR6/1696-1768  OS Porcine reproductive and respiratory syndrome virus
#=GS A0A1P8NRR6/1696-1768  DE ORF1a
#=GS A0A1P8NRR6/1696-1768  DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; 
#=GS U3NGL1/1660-1732      AC U3NGL1
#=GS U3NGL1/1660-1732      OS Porcine reproductive and respiratory syndrome virus
#=GS U3NGL1/1660-1732      DE ORF1a polyprotein
#=GS U3NGL1/1660-1732      DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; 
#=GS A0A0U2YQP0/1688-1760  AC A0A0U2YQP0
#=GS A0A0U2YQP0/1688-1760  OS Porcine reproductive and respiratory syndrome virus
#=GS A0A0U2YQP0/1688-1760  DE Polyprotein 1a
#=GS A0A0U2YQP0/1688-1760  DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; 
#=GS A0A1P8NRK3/1685-1757  AC A0A1P8NRK3
#=GS A0A1P8NRK3/1685-1757  OS Porcine reproductive and respiratory syndrome virus
#=GS A0A1P8NRK3/1685-1757  DE ORF1a
#=GS A0A1P8NRK3/1685-1757  DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; 
#=GS Q6UN13/1684-1756      AC Q6UN13
#=GS Q6UN13/1684-1756      OS Porcine reproductive and respiratory syndrome virus
#=GS Q6UN13/1684-1756      DE Replicase polyprotein 1A
#=GS Q6UN13/1684-1756      DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; 
#=GS G0TEG8/1673-1745      AC G0TEG8
#=GS G0TEG8/1673-1745      OS Porcine reproductive and respiratory syndrome virus
#=GS G0TEG8/1673-1745      DE Replicase polyprotein 1a
#=GS G0TEG8/1673-1745      DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; 
#=GS V5N5M1/1701-1773      AC V5N5M1
#=GS V5N5M1/1701-1773      OS Porcine reproductive and respiratory syndrome virus
#=GS V5N5M1/1701-1773      DE Polyprotein 1a
#=GS V5N5M1/1701-1773      DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; 
#=GS A0A1P8NRL0/1702-1774  AC A0A1P8NRL0
#=GS A0A1P8NRL0/1702-1774  OS Porcine reproductive and respiratory syndrome virus
#=GS A0A1P8NRL0/1702-1774  DE ORF1a
#=GS A0A1P8NRL0/1702-1774  DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; 
#=GS A0A1L3H034/1701-1773  AC A0A1L3H034
#=GS A0A1L3H034/1701-1773  OS Porcine reproductive and respiratory syndrome virus
#=GS A0A1L3H034/1701-1773  DE Polyprotein 1a
#=GS A0A1L3H034/1701-1773  DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; 
#=GS A0A0K2DRE0/1681-1753  AC A0A0K2DRE0
#=GS A0A0K2DRE0/1681-1753  OS Porcine reproductive and respiratory syndrome virus
#=GS A0A0K2DRE0/1681-1753  DE ORF1a
#=GS A0A0K2DRE0/1681-1753  DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; 
#=GS A0A1P8NRD2/1691-1763  AC A0A1P8NRD2
#=GS A0A1P8NRD2/1691-1763  OS Porcine reproductive and respiratory syndrome virus
#=GS A0A1P8NRD2/1691-1763  DE ORF1a
#=GS A0A1P8NRD2/1691-1763  DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; 
#=GS A0A0S2IKF5/1676-1748  AC A0A0S2IKF5
#=GS A0A0S2IKF5/1676-1748  OS Porcine reproductive and respiratory syndrome virus
#=GS A0A0S2IKF5/1676-1748  DE ORF1a
#=GS A0A0S2IKF5/1676-1748  DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; 
#=GS A0A140GJK3/1646-1718  AC A0A140GJK3
#=GS A0A140GJK3/1646-1718  OS Porcine reproductive and respiratory syndrome virus
#=GS A0A140GJK3/1646-1718  DE Pp1a
#=GS A0A140GJK3/1646-1718  DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; 
#=GS A7UKW2/1701-1773      AC A7UKW2
#=GS A7UKW2/1701-1773      OS Porcine reproductive and respiratory syndrome virus
#=GS A7UKW2/1701-1773      DE Polyprotein
#=GS A7UKW2/1701-1773      DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; 
#=GS V5JCU6/1696-1768      AC V5JCU6
#=GS V5JCU6/1696-1768      OS Porcine reproductive and respiratory syndrome virus
#=GS V5JCU6/1696-1768      DE Nonstructural protein
#=GS V5JCU6/1696-1768      DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; 
#=GS A0A0U2M4P4/1700-1772  AC A0A0U2M4P4
#=GS A0A0U2M4P4/1700-1772  OS Porcine reproductive and respiratory syndrome virus
#=GS A0A0U2M4P4/1700-1772  DE Polyprotein 1a
#=GS A0A0U2M4P4/1700-1772  DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; 
#=GS A0A1P8NRE1/1699-1771  AC A0A1P8NRE1
#=GS A0A1P8NRE1/1699-1771  OS Porcine reproductive and respiratory syndrome virus
#=GS A0A1P8NRE1/1699-1771  DE ORF1a
#=GS A0A1P8NRE1/1699-1771  DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; 
#=GS V5N5Z0/1698-1770      AC V5N5Z0
#=GS V5N5Z0/1698-1770      OS Porcine reproductive and respiratory syndrome virus
#=GS V5N5Z0/1698-1770      DE Polyprotein 1a
#=GS V5N5Z0/1698-1770      DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; 
#=GS A0A1P8NRG7/1651-1723  AC A0A1P8NRG7
#=GS A0A1P8NRG7/1651-1723  OS Porcine reproductive and respiratory syndrome virus
#=GS A0A1P8NRG7/1651-1723  DE ORF1a
#=GS A0A1P8NRG7/1651-1723  DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; 
#=GS A0A1P8NRM4/1685-1757  AC A0A1P8NRM4
#=GS A0A1P8NRM4/1685-1757  OS Porcine reproductive and respiratory syndrome virus
#=GS A0A1P8NRM4/1685-1757  DE ORF1a
#=GS A0A1P8NRM4/1685-1757  DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; 
#=GS D0V780/1696-1768      AC D0V780
#=GS D0V780/1696-1768      OS Porcine reproductive and respiratory syndrome virus
#=GS D0V780/1696-1768      DE Replicase polyprotein 1a
#=GS D0V780/1696-1768      DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; 
#=GS A0A1U9X9Q8/1700-1772  AC A0A1U9X9Q8
#=GS A0A1U9X9Q8/1700-1772  OS Porcine reproductive and respiratory syndrome virus
#=GS A0A1U9X9Q8/1700-1772  DE Replicase polyprotein 1a
#=GS A0A1U9X9Q8/1700-1772  DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; 
#=GS A0A1P8NRH6/1668-1740  AC A0A1P8NRH6
#=GS A0A1P8NRH6/1668-1740  OS Porcine reproductive and respiratory syndrome virus
#=GS A0A1P8NRH6/1668-1740  DE ORF1a
#=GS A0A1P8NRH6/1668-1740  DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; 
#=GS E9P7U0/1627-1699      AC E9P7U0
#=GS E9P7U0/1627-1699      OS Porcine reproductive and respiratory syndrome virus
#=GS E9P7U0/1627-1699      DE ORF1a polyprotein
#=GS E9P7U0/1627-1699      DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; 
#=GS E9P7Y0/1701-1773      AC E9P7Y0
#=GS E9P7Y0/1701-1773      OS Porcine reproductive and respiratory syndrome virus
#=GS E9P7Y0/1701-1773      DE ORF1a polyprotein
#=GS E9P7Y0/1701-1773      DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; 
#=GS A0A0U2V7J4/1654-1726  AC A0A0U2V7J4
#=GS A0A0U2V7J4/1654-1726  OS Porcine reproductive and respiratory syndrome virus
#=GS A0A0U2V7J4/1654-1726  DE ORF1ab protein
#=GS A0A0U2V7J4/1654-1726  DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; 
#=GF SQ 28
Q04561/1701-1773              PCLNTVNVVGSSLGSGGVFTIDGRRTVVTAAHVLNGDTARVTGDSYNRMHTFKTNGDYAWSHADDWQGVAPVV
A0MD28/1684-1756              PCLNTVNVVGSSLGSGGVFTIDGRKTVVTAAHVLNGDTARVTGDSYNRMHTFKTSGDYAWSHADDWQGVAPVV
A0A1P8NRR6/1696-1768          PCLNTVNVVGSSLGSGGVFTIDGRRTVVTAAHVLNGDTARVTGDSYNRMHTFKTNGDYAWSHADDWQGVAPVV
U3NGL1/1660-1732              PCLNTVNVVGSSLGSGGVFTIDGRKTVVTATHVLNGDTARVTGDSYNRMHTFKTNGDYAWSHADDWQGVAPVV
A0A0U2YQP0/1688-1760          PCLNTVNVVGSSLGSGGVFTIDGRRVIVTAAHVLNGKTARVTGDSYNRMHTFETNGDYAWSHADDWQGVAPVV
A0A1P8NRK3/1685-1757          PCLNTVNVVGSSLGSGGVFTIDGRKTVVTATHVLNGDTARVTGDSYNRMHTFKTSGDYAWSHADDWQGVAPVV
Q6UN13/1684-1756              PCLNTVNVVGSSLGSGGVFTINGRRTVVTAAHVLNGDTARVTGDSYNRMHTFKTNGDYAWSHADDWQGVAPVV
G0TEG8/1673-1745              PCLNTVNVVGSSLGSGGVFTIDGRKTIVTATHVLNGDTARVTGDSYNRMHTFKTNGDYAWSHADDWRGVAPAV
V5N5M1/1701-1773              PCLNTVNVVGSSLGSGGVFTIDGRRTIITAAHVLNGDTARVTGDSYNRMHTFKTNGDYAWSHADDWQGVAPAV
A0A1P8NRL0/1702-1774          PCLNTVNVVGSSLGSGGVFTIDGRKVIVTATHVLNGDTARVTGDSYNRMHTFKTNGDYAWSHADNWQGVAPLV
A0A1L3H034/1701-1773          PCLNTVNVVGSSFGSGGVFTIDGKKTVVTATHVLNGDTARVTGDSYNRMLTFRTNGDYAWSHADDWQGVAPVV
A0A0K2DRE0/1681-1753          PCLNTVNVVGSSLGSGGVFTIDGRKTVVTATHVLNGDVARVTGESYNRMHTFKTNGDYAWSHADDWQGVAPVV
A0A1P8NRD2/1691-1763          PCLNTVNVVGSSLGSGGVFTIDGRKTIVTAAHVLNGDTARVTGDSYNRMHTFKTNGDYAWSHADAWQGVAPVV
A0A0S2IKF5/1676-1748          PCLNTVSVVGSSLGSGGVFTIDGRKTVVTAAHVLNGDTARITGDSYNRMHTFKTNGDYAWSHADDWQGIAPVV
A0A140GJK3/1646-1718          PCLNTVNVVGSSLGSGGVFTIDGRRTIVTAAHVLNGNTARVTGDSYNRMHTFKTNGDYAWSHADDWQGVAPVV
A7UKW2/1701-1773              PCLNTVNVVGSSLGSGGVFTIDGRKTVVTAAHVLNGDTARVTGDSYNRMHTFNINGDYAWSHADGWQGVAPVV
V5JCU6/1696-1768              PCLNTVNVVGSSLGSGGVFTIDGRKTIITAAHVLNGDTARVTGDSYNRMHTFKVNGDYAWSHADDWQGVAPVV
A0A0U2M4P4/1700-1772          PCLNTVNVVGSSLGSGGVFTVDGRKTIVTATHVLNGDTARVTGDSYNRMLTFKTNGDYAWSHVDDWQGVAPVV
A0A1P8NRE1/1699-1771          PCSNTVNVVGSSLGSGGVFTIDGRKTIVTAAHVLNGDTARVTGDSYNRMHTFKTNGDYAWSFADDWKGVAPMV
V5N5Z0/1698-1770              PCLNTVNVVGSSLGSGGVFTIDGRKTIVTAAHVLNGDTARVTGDSYNRMHTFKTNGDYAWSHADGWQGVAPVV
A0A1P8NRG7/1651-1723          PCLNTVNVVGSSLGSGGVFTIDGRKTIVTATHVLNGDTARVTGDSYNRVHTFKTNGDYAWSHADDWQGVAPAV
A0A1P8NRM4/1685-1757          PCLNTVNVVGSSLGSGGVFTIDGRRTVVTAAHVLNGDTARVTGDSYNRMHTFKTNGDYAWSHADDWQGIAPVV
D0V780/1696-1768              PCLNTVSVVGSSLGSGGVFTIDGKRIVVTAAHVLNGDTARVTGDSYSRMHTFRTNGDYAWSHADDWRGVAPVV
A0A1U9X9Q8/1700-1772          PCLNTVNVVGSSLGSGGVFTIDGRRIVVTATHVLSGDTARVTGDSYNRMHTFKTNGDYAWSHADNWEGVAPVV
A0A1P8NRH6/1668-1740          PCLNTVNVVGSSLGSGGVFTINKKKIVVTAAHVLNGDTARVTGDSYNRIHTFKTNGDYAWSHADDWQGVAPTV
E9P7U0/1627-1699              PCLNAVNVVGSSLGSGGVFTIEGRKIVVTATHVLNGDTARVTGDSYNRMHTFKTTGDYAWSHANDWQGVAPVV
E9P7Y0/1701-1773              PCLNTVNVVGSSLGSGGVFTIDGRRTVVTAAHVLNGDTARVTGDSYNRMHTFKTNGDYAWSHADDWRGVAPVV
A0A0U2V7J4/1654-1726          PCLNTVNVVGSSLGSGGVFTIDGRRVIVTATHVLNGNTARVTGDSYNRMHTFNTNGDYAWSHADDWQGVAPMV
#=GC scorecons                9989898999998999999987887678996999897899899899898799787999999888797989969
#=GC scorecons_70             *************************_***********************************************
#=GC scorecons_80             *************************__***_*********************_******************_*
#=GC scorecons_90             *********************_*____***_*****_************_**_*_*********_*_****_*
//