# STOCKHOLM 1.0
#=GF ID 1.25.40.10/FF/000436
#=GF DE Pentatricopeptide repeat-containing protein At5g39350 family
#=GF AC 1.25.40.10/FF/000436
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 98.279
#=GS F4J1L5/252-355      AC F4J1L5
#=GS F4J1L5/252-355      OS Arabidopsis thaliana
#=GS F4J1L5/252-355      DE LOW protein: PPR containing-like protein
#=GS F4J1L5/252-355      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS F4J1L5/252-355      DR GO; GO:0009409; GO:0009451; GO:0009507; GO:0009644; GO:0010027; GO:0010207; GO:0010380; GO:0048564; 
#=GS Q9SN39/413-532      AC Q9SN39
#=GS Q9SN39/413-532      OS Arabidopsis thaliana
#=GS Q9SN39/413-532      DE Pentatricopeptide repeat-containing protein DOT4, chloroplastic
#=GS Q9SN39/413-532      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS Q9SN39/413-532      DR GO; GO:0010087; GO:0010305; GO:0010588; GO:0048366; GO:1900865; 
#=GS Q9C507/218-320      AC Q9C507
#=GS Q9C507/218-320      OS Arabidopsis thaliana
#=GS Q9C507/218-320      DE Putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial
#=GS Q9C507/218-320      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS Q9XE98/258-361      AC Q9XE98
#=GS Q9XE98/258-361      OS Arabidopsis thaliana
#=GS Q9XE98/258-361      DE Pentatricopeptide repeat-containing protein At4g04370
#=GS Q9XE98/258-361      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS Q9LUJ2/252-353      AC Q9LUJ2
#=GS Q9LUJ2/252-353      OS Arabidopsis thaliana
#=GS Q9LUJ2/252-353      DE Pentatricopeptide repeat-containing protein At3g22690
#=GS Q9LUJ2/252-353      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS A0A178UCZ9/338-458  AC A0A178UCZ9
#=GS A0A178UCZ9/338-458  OS Arabidopsis thaliana
#=GS A0A178UCZ9/338-458  DE Uncharacterized protein
#=GS A0A178UCZ9/338-458  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS Q9FLZ9/338-458      AC Q9FLZ9
#=GS Q9FLZ9/338-458      OS Arabidopsis thaliana
#=GS Q9FLZ9/338-458      DE Pentatricopeptide repeat-containing protein At5g39350
#=GS Q9FLZ9/338-458      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS E0CVP3/263-369      AC E0CVP3
#=GS E0CVP3/263-369      OS Vitis vinifera
#=GS E0CVP3/263-369      DE Uncharacterized protein
#=GS E0CVP3/263-369      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Vitales; Vitaceae; Viteae; Vitis; Vitis vinifera; 
#=GS F6HDS6/226-308      AC F6HDS6
#=GS F6HDS6/226-308      OS Vitis vinifera
#=GS F6HDS6/226-308      DE Uncharacterized protein
#=GS F6HDS6/226-308      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Vitales; Vitaceae; Viteae; Vitis; Vitis vinifera; 
#=GS A0A0N7KCI8/218-309  AC A0A0N7KCI8
#=GS A0A0N7KCI8/218-309  OS Oryza sativa Japonica Group
#=GS A0A0N7KCI8/218-309  DE Os01g0205200 protein
#=GS A0A0N7KCI8/218-309  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa; 
#=GS D7SXJ1/341-464      AC D7SXJ1
#=GS D7SXJ1/341-464      OS Vitis vinifera
#=GS D7SXJ1/341-464      DE Uncharacterized protein
#=GS D7SXJ1/341-464      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Vitales; Vitaceae; Viteae; Vitis; Vitis vinifera; 
#=GS I1K1E8/276-390      AC I1K1E8
#=GS I1K1E8/276-390      OS Glycine max
#=GS I1K1E8/276-390      DE Uncharacterized protein
#=GS I1K1E8/276-390      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja; Glycine max; 
#=GS B9HUS7/213-314      AC B9HUS7
#=GS B9HUS7/213-314      OS Populus trichocarpa
#=GS B9HUS7/213-314      DE Uncharacterized protein
#=GS B9HUS7/213-314      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Malpighiales; Salicaceae; Saliceae; Populus; Populus trichocarpa; 
#=GS A0A0D3A468/413-528  AC A0A0D3A468
#=GS A0A0D3A468/413-528  OS Brassica oleracea var. oleracea
#=GS A0A0D3A468/413-528  DE Uncharacterized protein
#=GS A0A0D3A468/413-528  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica oleracea; Brassica oleracea var. oleracea; 
#=GS A0A087GF94/396-510  AC A0A087GF94
#=GS A0A087GF94/396-510  OS Arabis alpina
#=GS A0A087GF94/396-510  DE Uncharacterized protein
#=GS A0A087GF94/396-510  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Arabideae; Arabis; Arabis alpina; 
#=GS D7M9F5/413-530      AC D7M9F5
#=GS D7M9F5/413-530      OS Arabidopsis lyrata subsp. lyrata
#=GS D7M9F5/413-530      DE Pentatricopeptide repeat-containing protein
#=GS D7M9F5/413-530      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis lyrata; Arabidopsis lyrata subsp. lyrata; 
#=GS A0A1B6P7H7/280-391  AC A0A1B6P7H7
#=GS A0A1B6P7H7/280-391  OS Sorghum bicolor
#=GS A0A1B6P7H7/280-391  DE Uncharacterized protein
#=GS A0A1B6P7H7/280-391  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Sorghinae; Sorghum; Sorghum bicolor; 
#=GS A0A151TI65/261-378  AC A0A151TI65
#=GS A0A151TI65/261-378  OS Cajanus cajan
#=GS A0A151TI65/261-378  DE Pentatricopeptide repeat-containing protein At5g39350 family
#=GS A0A151TI65/261-378  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus; Cajanus cajan; 
#=GS V7CHZ4/329-443      AC V7CHZ4
#=GS V7CHZ4/329-443      OS Phaseolus vulgaris
#=GS V7CHZ4/329-443      DE Uncharacterized protein
#=GS V7CHZ4/329-443      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus; Phaseolus vulgaris; 
#=GS A0A1D6M0U6/276-392  AC A0A1D6M0U6
#=GS A0A1D6M0U6/276-392  OS Zea mays
#=GS A0A1D6M0U6/276-392  DE Putative pentatricopeptide repeat family protein
#=GS A0A1D6M0U6/276-392  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; 
#=GS I1LFV1/269-382      AC I1LFV1
#=GS I1LFV1/269-382      OS Glycine max
#=GS I1LFV1/269-382      DE Uncharacterized protein
#=GS I1LFV1/269-382      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja; Glycine max; 
#=GS I1J411/263-366      AC I1J411
#=GS I1J411/263-366      OS Glycine max
#=GS I1J411/263-366      DE Uncharacterized protein
#=GS I1J411/263-366      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja; Glycine max; 
#=GS K7K4F6/329-449      AC K7K4F6
#=GS K7K4F6/329-449      OS Glycine max
#=GS K7K4F6/329-449      DE Uncharacterized protein
#=GS K7K4F6/329-449      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja; Glycine max; 
#=GF SQ 23
F4J1L5/252-355              ---LETGEKVYAFIRNSGIEVNDLMVSALVDMYMKC---NAIDVAKRLFDEYGASNLDLCNAMASNYVR-QGLTREALGVFNLMMDSG-VRPDRISMLSAISSCSQLRNILW--------------------
Q9SN39/413-532              ---LDEGKRVHEWIKENDLGFDIFVSNALMDMYAKC---GSMQEAELVFSEMRVKDIISWNTIIGGYSK-NCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFS-----
Q9C507/218-320              ---LRIARSVHGQITRKMFDLDETLCNSLLTMYSKC---GDLLSSERIFEKIAKKNAVSWTAMISSYNR-GEFSEKALRSFSEMIKSG-IEPNLVTLYSVLSSCGLIGLIR---------------------
Q9XE98/258-361              MCDLEMGRMLHCQIVKTGFDVDMHLKTALITMYLKC---GKEEASYRVLETIPNKDVVCWTVMISGLMR-LGRAEKALIVFSEMLQSG-SDLSSEAIASVVASCAQLGS-----------------------
Q9LUJ2/252-353              ---LETGEKVYAFIRNSGIEVNDLMVSALVDMYMKC---NAIDVAKRLFDEYGASNLDLCNAMASNYVR-QGLTREALGVFNLMMDSG-VRPDRISMLSAISSCSQLRNI----------------------
A0A178UCZ9/338-458          ------GKCLHGWAVRQQVYSDIIIETSLISMYAKC---KRVDLCFRVFSGASKYHTGPWSAIIAGCVQ-NELVSDALGLFKRMRRED-VEPNIATLNSLLPAYAALADLRQAMNIHCYLTKTGFMSSLDAA
Q9FLZ9/338-458              ------GKCLHGWAVRQQVYSDIIIETSLISMYAKC---KRVDLCFRVFSGASKYHTGPWSAIIAGCVQ-NELVSDALGLFKRMRRED-VEPNIATLNSLLPAYAALADLRQAMNIHCYLTKTGFMSSLDAA
E0CVP3/263-369              ---LGVGKMVHGHILRAGLEQDSHIETSLIGMYLKC---GNVNSAFRIFEGMMHKDVISWTAMISGLVQ-NDCADMAVTVFRRMLKSR-VMPSTATIASVLAACAELGSFPLGTS-----------------
F6HDS6/226-308              ----------------------KVMVNALVDMYMKC---GAIDAAKRLFDECVDRNLVLYNTILSNYAR-QGLAREALAILDEMLQQG-PRPDRVTMLSAISASAQLVDL----------------------
A0A0N7KCI8/218-309          ----------HGYAIRNGIEEVLPVANALMEMYVKC---GYMEEARFIFDHVTKKDTISWNTLIGGYSR-SNLANEAFTLFNEMLLQ--LRPNAVTMACILPAAASLS------------------------
D7SXJ1/341-464              ---LKHGRCLHGWAIRQKLESEVIVETALIDMYAKC---NNVNLSFRVFSKTSKQRTAPWNAIISGCIH-NGLSRKAIELFKQMLMEA-VDPNDATLNSLLPAYAFLTDLQQARNMHGYLIRSGFLSRIEVA
I1K1E8/276-390              ---LELGKWIGSWVRDRGFGKNLQLVNALVDMYSKC---GEIGTARKLFDGMEDKDVILWNTMIGGYCH-LSLYEEALVLFEVMLREN-VTPNDVTFLAVLPACASLGALDLGKWVHAYIDKN---------
B9HUS7/213-314              -----LGEQVCTCIGELELEVNALMVNALVDMYMKC---GAIDKARKIFDECVDKNLVLYNTIMSNYVR-QGLAREVLAVLGEMLKHG-PRPDRITMLSAVSACSELDDVSC--------------------
A0A0D3A468/413-528          ----EEGKRVHEWIKENDMGFDIFLSNALMDMYAKC---GSMGEAEIVFSEMPVRDIISWNTIIGGYSK-NCYANEALSLFNLLLEEKRFVPDERTVVCVLPACASLSAFDKGREIHGYIVRNG--------
A0A087GF94/396-510          ----DEGKRVHEWIKENDMGFDMFVSNALMDMYAKC---GSMREAELVFSEMPVKDIYSWNTVIGGYSK-NCYANEALSLFSLMLEEKRVDPDERTVACLLPACASLSAFDKGREIHGYIMRN---------
D7M9F5/413-530              ---LDEGKRVHEWIKENDMGFDIFVSNALMDMYAKC---GSMREAELVFSEMRVKDIISWNTVIGGYSK-NCYANEALSLFNLLLVEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGY-------
A0A1B6P7H7/280-391          -----------SLALRLGLESDSCVSCGLVDMYAKSHNGHSLHNARKVFNRMPKHNVMSWTALLSGYVQRGSQDNQVMILFCEMLNEG-IRPNHITYSSMLKACANLGDQDSGRQIHTHCVKSS--------
A0A151TI65/261-378          --YLSHGKCLHAWAIRQKLESEVVVETALIDMYAKC---NRGNLSYKVFMGTSKKRTAPWNAILSGFIQ-NRLAREAIELFKQMLVKD-VQPDNATFNSLLPAYAILADLLQAINIHCHLIKSGF-------
V7CHZ4/329-443              -VYLKHGKCLHAWAIRQKLESEVIVETALIDMYAKC---NHGNLSYKVFMGTSKKRTAPWNALLSGFIQ-NRLGGEAIKLFKQMLVKG-VQPDNATCNSLLPAYAILADLLQAMNIHCYLI-----------
A0A1D6M0U6/276-392          --------QLHSLALRLGLESDSCVSCGLVDMYAKSHNGQSLHNAREVFNRMPKHNVMAWTALLSGYVQRGSQDNQVMILFCKMLNEG-IRPNHITYSSMLKACANLGDQDSGRQIHTHCVKSNLA------
I1LFV1/269-382              -------KKVCSYISELGMELSTIMVNALVDMYMKC---GDICAARQIFDECANKNLVMYNTIMSNYVH-HEWASDVLVILDEMLQKG-PRPDKVTMLSTIAACAQLGDLSVGKSSHAYVLRNGLE------
I1J411/263-366              --FFSLGKQLHSWVIRSGLASDVFVGCTLVDMYAKS---AAVENSRKIFNTMLHHNVMSWTALISGYVQ-SRQEQEAIKLFCNMLHGH-VTPNCFTFSSVLKACASLPDFG---------------------
K7K4F6/329-449              -VYLNHGKCLHAWAIRQKIESEVIVETALINMYAKC---NCGNLSYKVFMGTSKKRTAPWNALLSGFIQ-NRLAREAIELFKQMLVKD-VQPDHATFNSLLPAYAILADLQQAMNIHCYLIRSGFLY-----
#=GC scorecons              000211442453353434443533534696699497000434335346844333554346665566645043444576367338634404385337436464767384432121122121121100000000
#=GC scorecons_70           ____________________________*__**_**___________**__________*_____**_________*___*__**______*___*__*_*_*_*_*_________________________
#=GC scorecons_80           ____________________________*__**_**____________*___________________________*___*__*_______*___*______*_*_*_________________________
#=GC scorecons_90           ____________________________*__**_*_____________*__________________________________________*______________*_________________________
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