# STOCKHOLM 1.0
#=GF ID 1.25.40.10/FF/000390
#=GF DE Tetratricopeptide repeat (TPR)-like superfamily protein
#=GF AC 1.25.40.10/FF/000390
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 62.906
#=GS Q9LKU3/348-502      AC Q9LKU3
#=GS Q9LKU3/348-502      OS Arabidopsis thaliana
#=GS Q9LKU3/348-502      DE Tetratricopeptide repeat (TPR)-like superfamily protein
#=GS Q9LKU3/348-502      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS A0A178ULT4/348-502  AC A0A178ULT4
#=GS A0A178ULT4/348-502  OS Arabidopsis thaliana
#=GS A0A178ULT4/348-502  DE Uncharacterized protein
#=GS A0A178ULT4/348-502  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS Q8LIB1/357-509      AC Q8LIB1
#=GS Q8LIB1/357-509      OS Oryza sativa Japonica Group
#=GS Q8LIB1/357-509      DE Os07g0644300 protein
#=GS Q8LIB1/357-509      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa; 
#=GS A9SYX9/323-497      AC A9SYX9
#=GS A9SYX9/323-497      OS Physcomitrella patens
#=GS A9SYX9/323-497      DE Predicted protein
#=GS A9SYX9/323-497      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella; Physcomitrella patens; 
#=GS F6H863/350-500      AC F6H863
#=GS F6H863/350-500      OS Vitis vinifera
#=GS F6H863/350-500      DE Uncharacterized protein
#=GS F6H863/350-500      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Vitales; Vitaceae; Viteae; Vitis; Vitis vinifera; 
#=GS B9S614/335-499      AC B9S614
#=GS B9S614/335-499      OS Ricinus communis
#=GS B9S614/335-499      DE XPA-binding protein, putative
#=GS B9S614/335-499      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus; Ricinus communis; 
#=GS A0A2H5N2A7/356-501  AC A0A2H5N2A7
#=GS A0A2H5N2A7/356-501  OS Citrus unshiu
#=GS A0A2H5N2A7/356-501  DE Uncharacterized protein
#=GS A0A2H5N2A7/356-501  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Sapindales; Rutaceae; Aurantioideae; Citrus; Citrus unshiu; 
#=GS A0A1U8KC12/350-500  AC A0A1U8KC12
#=GS A0A1U8KC12/350-500  OS Gossypium hirsutum
#=GS A0A1U8KC12/350-500  DE pre-mRNA-splicing factor SYF1-like
#=GS A0A1U8KC12/350-500  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Malvales; Malvaceae; Malvoideae; Gossypium; Gossypium hirsutum; 
#=GS B9H231/335-495      AC B9H231
#=GS B9H231/335-495      OS Populus trichocarpa
#=GS B9H231/335-495      DE Uncharacterized protein
#=GS B9H231/335-495      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Malpighiales; Salicaceae; Saliceae; Populus; Populus trichocarpa; 
#=GS M4DVS5/346-499      AC M4DVS5
#=GS M4DVS5/346-499      OS Brassica rapa subsp. pekinensis
#=GS M4DVS5/346-499      DE Uncharacterized protein
#=GS M4DVS5/346-499      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica rapa; Brassica rapa subsp. pekinensis; 
#=GS V4K459/348-502      AC V4K459
#=GS V4K459/348-502      OS Eutrema salsugineum
#=GS V4K459/348-502      DE Uncharacterized protein
#=GS V4K459/348-502      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Eutremeae; Eutrema; Eutrema salsugineum; 
#=GS A0A1D6IL59/360-524  AC A0A1D6IL59
#=GS A0A1D6IL59/360-524  OS Zea mays
#=GS A0A1D6IL59/360-524  DE Tetratricopeptide repeat (TPR)-like superfamily protein
#=GS A0A1D6IL59/360-524  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; 
#=GS A0A453AX65/445-598  AC A0A453AX65
#=GS A0A453AX65/445-598  OS Aegilops tauschii subsp. strangulata
#=GS A0A453AX65/445-598  DE Uncharacterized protein
#=GS A0A453AX65/445-598  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Pooideae; Triticeae; Triticinae; Aegilops; Aegilops tauschii; Aegilops tauschii subsp. strangulata; 
#=GS A0A0D3AX47/349-500  AC A0A0D3AX47
#=GS A0A0D3AX47/349-500  OS Brassica oleracea var. oleracea
#=GS A0A0D3AX47/349-500  DE Uncharacterized protein
#=GS A0A0D3AX47/349-500  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica oleracea; Brassica oleracea var. oleracea; 
#=GS V4U912/356-501      AC V4U912
#=GS V4U912/356-501      OS Citrus clementina
#=GS V4U912/356-501      DE Uncharacterized protein
#=GS V4U912/356-501      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Sapindales; Rutaceae; Aurantioideae; Citrus; Citrus clementina; 
#=GS A0A0D2TRG7/350-496  AC A0A0D2TRG7
#=GS A0A0D2TRG7/350-496  OS Gossypium raimondii
#=GS A0A0D2TRG7/350-496  DE Uncharacterized protein
#=GS A0A0D2TRG7/350-496  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Malvales; Malvaceae; Malvoideae; Gossypium; Gossypium raimondii; 
#=GS A0A067GK26/349-497  AC A0A067GK26
#=GS A0A067GK26/349-497  OS Citrus sinensis
#=GS A0A067GK26/349-497  DE Uncharacterized protein
#=GS A0A067GK26/349-497  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Sapindales; Rutaceae; Aurantioideae; Citrus; Citrus sinensis; 
#=GS A0A3L6TB40/361-517  AC A0A3L6TB40
#=GS A0A3L6TB40/361-517  OS Panicum miliaceum
#=GS A0A3L6TB40/361-517  DE Pre-mRNA-splicing factor SYF1
#=GS A0A3L6TB40/361-517  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Paniceae; Panicinae; Panicum; Panicum miliaceum; 
#=GS C5X3Z7/361-513      AC C5X3Z7
#=GS C5X3Z7/361-513      OS Sorghum bicolor
#=GS C5X3Z7/361-513      DE Uncharacterized protein
#=GS C5X3Z7/361-513      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Sorghinae; Sorghum; Sorghum bicolor; 
#=GS K3ZQH3/359-511      AC K3ZQH3
#=GS K3ZQH3/359-511      OS Setaria italica
#=GS K3ZQH3/359-511      DE Uncharacterized protein
#=GS K3ZQH3/359-511      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Paniceae; Cenchrinae; Setaria; Setaria italica; 
#=GS A0A2S3H4L2/359-510  AC A0A2S3H4L2
#=GS A0A2S3H4L2/359-510  OS Panicum hallii
#=GS A0A2S3H4L2/359-510  DE Uncharacterized protein
#=GS A0A2S3H4L2/359-510  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Paniceae; Panicinae; Panicum; Panicum sect. Panicum; Panicum hallii; 
#=GS A0A0E0QBY2/357-509  AC A0A0E0QBY2
#=GS A0A0E0QBY2/357-509  OS Oryza rufipogon
#=GS A0A0E0QBY2/357-509  DE Uncharacterized protein
#=GS A0A0E0QBY2/357-509  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza rufipogon; 
#=GS A0A1D6F2G7/360-512  AC A0A1D6F2G7
#=GS A0A1D6F2G7/360-512  OS Zea mays
#=GS A0A1D6F2G7/360-512  DE Tetratricopeptide repeat (TPR)-like superfamily protein
#=GS A0A1D6F2G7/360-512  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; 
#=GS A0A1D6F2H0/334-486  AC A0A1D6F2H0
#=GS A0A1D6F2H0/334-486  OS Zea mays
#=GS A0A1D6F2H0/334-486  DE Tetratricopeptide repeat (TPR)-like superfamily protein
#=GS A0A1D6F2H0/334-486  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; 
#=GS A0A3L6QTN1/360-511  AC A0A3L6QTN1
#=GS A0A3L6QTN1/360-511  OS Panicum miliaceum
#=GS A0A3L6QTN1/360-511  DE Pre-mRNA-splicing factor SYF1
#=GS A0A3L6QTN1/360-511  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Paniceae; Panicinae; Panicum; Panicum miliaceum; 
#=GS A0A1U8L555/347-499  AC A0A1U8L555
#=GS A0A1U8L555/347-499  OS Gossypium hirsutum
#=GS A0A1U8L555/347-499  DE pre-mRNA-splicing factor SYF1-like
#=GS A0A1U8L555/347-499  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Malvales; Malvaceae; Malvoideae; Gossypium; Gossypium hirsutum; 
#=GF SQ 26
Q9LKU3/348-502              -----------------WLNDDNDVDLRLARLEELMNRRPALANSVLLRQNPHNVEQWH----RRVKIFEGNAAKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYENHKDLVNTRVIFDKAVQVNYKTVDHLASVWCEWAEMELRHKNFKGALELMRRATAVPTVE-------VRRRVAAD---
A0A178ULT4/348-502          -----------------WLNDDNDVDLRLARLEELMNRRPALANSVLLRQNPHNVEQWH----RRVKIFEGNAAKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYENHKDLVNTRVIFDKAVQVNYKTVDHLASVWCEWAEMELRHKNFKGALELMRRATAVPTVE-------VRRRVAAD---
Q8LIB1/357-509              ---------------DCWLNDEDDTDLRLARFERLLDRRPELLSSVLLRQNPHNVEEWH----RRVKLFEKDPTRQVATYVEAVKTVDPMKAAGKPHTLWVAFAKMYEKHNRLDSAEEIFKKATQVNYKAVDHLASIWCEWAEMELRHSNFDKAIELMRQATAEPSVE-------VKRR-------
A9SYX9/323-497              QDPHRLVSFEKWIEKSFWLNEENDVDLRLARLENLMERRPELVSSVLLRQNPHNVHEWH----KRVKLFANNPSKQVLTFTEAVRTVDAMKAVGRPHTLWVAFAKLYESHADVVNARVIFEKAVMVNYKAVDDLAIVWCEWAEMELRHKNLKGALDLMQRSTAEPSVA-------IKRKVAELGEE
F6H863/350-500              --------------------DFNDVDLRLARLEHLMDRRPELANSVLLRQNPHNVEQWH----RRIKLFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYENHKDVANARVIFDKAVQVNYKTLDNLASVWCEWAEMELRHKNFKGALELMRRATAEPSVE-------VKRKVAA----
B9S614/335-499              -------KFEKKMLNGFWLHEDNDVDLMLARLEYLMDRRPELANSVLLRQNPHNVEQWH----RRVKLFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYENHNDLVNARVIFDKAVQVNYKTVDNLASIWCEWAEMELRHQNFSGALELLRRATAEPSVE-------VKRRVAAD---
A0A2H5N2A7/356-501          --------------------------LRLARLEHLMNRRPELANSVLLRQNPHNVEQWH----RRVKIFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVE-------VRRRVAAD---
A0A1U8KC12/350-500          ---------------------DKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWH----RRVKLFEGNPTKQILTYTEAVRTIDPMKAVGKPHILWVAFAKLYETYKDLANARVIFDKAVQVNYKTVDHLASIWAEWAEMELRHKNFKGALELMRRATAEPSVE-------VKRRVAAD---
B9H231/335-495              -------KFEKKLLNGFWLDDDNDVDLMLARLEYLMDRRPELANSVLLRQNPHNVEQWH----RRVKLFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYEDHNDLVNARVIFDKAVQVNYKTVDNLASVWCEWAEMEIRHRNFKGALELLRRATAEPSVE-------VKRR-------
M4DVS5/346-499              -----------------WLNDDNDVDLRLARLEELMNRRPALANSVLLRQNPHNVEQWH----RRVKIFEGDAAKQILTYTEAVRTVDPMKALGKPHTLWVAFAKLYEDHKDLVNTRVILDKAVQVNYKTVDHLASVWCEWAEMELRHKNFKGALELMRRATAVPTVE-------VKRRVAA----
V4K459/348-502              -----------------WLNDDNDVDLRLARLEELMNRRPALANSVLLRQNPHNVEQWH----RRVKIFEGNPAKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYENHKDLVNTRVILDKAVQVNYKNVDHLASVWCEWAEMELRHKNFKGALELMRRATAVPTVE-------VRRRVAAD---
A0A1D6IL59/360-524          ----------------FWLNDEDDTDLRMARFERLLDRRPELLSSVLLRQNPHNVEEWH----RRVKLFEKDPARQVATYVEAVKTVDPMKAVGKPHTLWVAFAKMYEKHSRLDSAEDIFKRATQVNYKAVDHLASIWCEWAEMELRHNNFDKAIELMRQATSEPSVENIHANNMIDAAAAEG-DE
A0A453AX65/445-598          ---------------ACWLNDEDDTDLRLARFERLLDRRPELLSSVLLRQNPHNVEEWH----RRVKLFDKDPAKQVATYVEAVKTVDPMKAVGKPHTLWVAFAKMYEKHNRLDSAEDIFKKATQVNYKAVDHLATIWCEWAEMELRNQHFDKAIELMRLATAEPSVE-------VKRRA------
A0A0D3AX47/349-500          --------------------DDNDVDLRLARLEELMNRRPALANSVLLRQNPHNVEQWH----RRVKIFEGDAAKQILTYTEAVRTVDPMKALGKPHTLWVAFAKLYEDHKDLVNTRVILDKAVQVNYKTVDHLASVWCEWAEMELRHKNFKGALELMRRATAVPTVE-------VKRRVAAD---
V4U912/356-501              --------------------------LRLARLEHLMNRRPELANSVLLRQNPHNVEQWH----RRVKIFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVE-------VRRRVAAD---
A0A0D2TRG7/350-496          ---------------------DKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWH----RRVKLFEGNPTKQILTYTEAVRTIDPMKAVGKPHTLWVAFAKLYETYKDLANARVIFDKAVQVNYKTVDHLASIWAEWAEMELRHKNFKGALELMRRATAEPSVE-------VKRR-------
A0A067GK26/349-497          ------------------LHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWH----RRVKIFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVE-------VRR--------
A0A3L6TB40/361-517          -----------------WLNDEDDTDLRMARFERLLDRRPELLSSVLLRQNPHNVEEWHSNMYRRVKLFEKDPARQVATYVEAVKTVDPMKAVGKPHTLWVAFAKMYEKHNRLDSAEDIFKRATQVNYKAVDHLASIWCEWAEMELRHNNFDKAIDLMRQATAEPSVE-------VKRRAA-----
C5X3Z7/361-513              -----------------WLNDEDDTDLRMARFERLLDRRPELLSSVLLRQNPHNVEEWH----RRVKLFEKDPARQVATYVEAVKTVDPMKAVGKPHTLWVAFAKMYEKHNRLDSAEDIFKRATQVNYKAVDHLASIWCEWAEMELRHNNFDKAIELMRQATAEPSVE-------VKRRAA-----
K3ZQH3/359-511              ---------------EFWLNDEDDTDLRMARFERLLDRRPELLSSVLLRQNPHNVEEWH----RRVKLFEKDPARQVATYVEAVKTVDPMKAVGKPHTLWVAFAKMYEKHSRLDSAEDIFKRATQVNYKAVDHLASIWCEWAEMELRHSNFDKAIELMRQATAEPSVE-------VKRR-------
A0A2S3H4L2/359-510          ---------------DFWLNDEDDTDLRMARFERLLDRRPELLSSVLLRQNPHNVEEWH----RRVKLFEKDPARQVATYVEAVKTVDPMKAVGKPHTLWLAFAKMYEKHNRLDSAEDIFKRATQVNYKAVDHLASIWCEWAEMELRHNNFDKAIELMRQATAEPSVE-------VKR--------
A0A0E0QBY2/357-509          ---------------DCWLNDEDDTDLRLARFERLLDRRPELLSSVLLRQNPHNVEEWH----RRVKLFEKDPTRQVATYVEAVKTVDPMKAAGKPHTLWVAFAKMYEKHNRLDSAEEIFKKATQVNYKAVDHLASIWCEWAEMELRHSNFDKAIELMRQATAEPSVE-------VKRR-------
A0A1D6F2G7/360-512          ----------------FWLNDEDDTDLRMARFERLLDRRPELLSSVLLRQNPHNVEEWH----RRVKLFEKDPARQVATYVEAVKTVDPMKAVGKPHTLWVAFAKMYEKHNRLDSAEDIFKRATQVNYKAVDHLASIWCEWAEMELRHNNFDKAIELMRQATAEPSVE-------VKRRA------
A0A1D6F2H0/334-486          ----------------FWLNDEDDTDLRMARFERLLDRRPELLSSVLLRQNPHNVEEWH----RRVKLFEKDPARQVATYVEAVKTVDPMKAVGKPHTLWVAFAKMYEKHNRLDSAEDIFKRATQVNYKAVDHLASIWCEWAEMELRHNNFDKAIELMRQATAEPSVE-------VKRRA------
A0A3L6QTN1/360-511          ----------------FWLNDEDDTDLRMARFERLLDRRPELLSSVLLRQNPHNVEEWH----RRVKLFEKDPARQVATYVEAVKTVDPMKAVGKPHTLWLAFAKMYEKHNRLDSAGDIFKRATQVNYKAVDHLASIWCEWAEMELRHNNFDKAIELMRQATAEPSVE-------VKRR-------
A0A1U8L555/347-499          ------------------LHDDKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWH----RRVKLFEGNPTKQILTYTEAVRTIDPMKAVGKPHILWVAFAKLYETYKDLANARVIFDKAVQVNYKTVDHLASIWAEWAEMELRHKNFKGALELMRRATAEPSVE-------VKRRVAA----
#=GC scorecons              000000000000000014545547479779969496699969569999999999986990000898969756767975985999798989997989989989999699475574675498579589999689799779799999989858855968988689869798000000087863310000
#=GC scorecons_70           _______________________*_********_********__***************____*******_**_***_**_***************************_*__*__*__**_**_*****_******************_**__******_********_______****_______
#=GC scorecons_80           _______________________*_***_**_*_*__***_*__************_**____****_**__*_**__**_***_********************_**_*_____*__**_**_*****_**_***************_**__*_****_***_****_______*_*________
#=GC scorecons_90           __________________________*__**_*_*__***_*__************_**____****_*______*__**_***_*******_************_**__________*___*__****_**_**__*_*********_**__*_****_***_*_**_______*_*________
//