# STOCKHOLM 1.0
#=GF ID 1.25.40.10/FF/001094
#=GF DE Intraflagellar transport particle protein IFT88
#=GF AC 1.25.40.10/FF/001094
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 80.813
#=GS Q9FPW0/393-727      AC Q9FPW0
#=GS Q9FPW0/393-727      OS Chlamydomonas reinhardtii
#=GS Q9FPW0/393-727      DE Intraflagellar transport particle protein IFT88
#=GS Q9FPW0/393-727      DR ORG; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas; Chlamydomonas reinhardtii; 
#=GS Q9FPW0/393-727      DR GO; GO:0005515; GO:0030992; GO:0031514; 
#=GS E9HYY9/380-717      AC E9HYY9
#=GS E9HYY9/380-717      OS Daphnia pulex
#=GS E9HYY9/380-717      DE Uncharacterized protein
#=GS E9HYY9/380-717      DR ORG; Eukaryota; Metazoa; Arthropoda; Crustacea; Branchiopoda; Phyllopoda; Diplostraca; Cladocera; Anomopoda; Daphniidae; Daphnia; Daphnia pulex; 
#=GS A8JCJ2/393-727      AC A8JCJ2
#=GS A8JCJ2/393-727      OS Chlamydomonas reinhardtii
#=GS A8JCJ2/393-727      DE Intraflagellar transport particle protein 88
#=GS A8JCJ2/393-727      DR ORG; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas; Chlamydomonas reinhardtii; 
#=GS A0A2K1ITM0/446-777  AC A0A2K1ITM0
#=GS A0A2K1ITM0/446-777  OS Physcomitrella patens
#=GS A0A2K1ITM0/446-777  DE Uncharacterized protein
#=GS A0A2K1ITM0/446-777  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella; Physcomitrella patens; 
#=GS A9T1R9/326-660      AC A9T1R9
#=GS A9T1R9/326-660      OS Physcomitrella patens
#=GS A9T1R9/326-660      DE Intraflagellar transport protein IFT88
#=GS A9T1R9/326-660      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella; Physcomitrella patens; 
#=GS A0CZI1/356-673      AC A0CZI1
#=GS A0CZI1/356-673      OS Paramecium tetraurelia
#=GS A0CZI1/356-673      DE Uncharacterized protein
#=GS A0CZI1/356-673      DR ORG; Eukaryota; Ciliophora; Intramacronucleata; Oligohymenophorea; Peniculida; Parameciidae; Paramecium; Paramecium tetraurelia; 
#=GS D8TVP1/390-725      AC D8TVP1
#=GS D8TVP1/390-725      OS Volvox carteri f. nagariensis
#=GS D8TVP1/390-725      DE Uncharacterized protein
#=GS D8TVP1/390-725      DR ORG; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox; Volvox carteri; Volvox carteri f. nagariensis; 
#=GS A0A150GYD8/390-721  AC A0A150GYD8
#=GS A0A150GYD8/390-721  OS Gonium pectorale
#=GS A0A150GYD8/390-721  DE Uncharacterized protein
#=GS A0A150GYD8/390-721  DR ORG; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Gonium; Gonium pectorale; 
#=GS A0A0P5N488/198-528  AC A0A0P5N488
#=GS A0A0P5N488/198-528  OS Daphnia magna
#=GS A0A0P5N488/198-528  DE Intraflagellar transport protein
#=GS A0A0P5N488/198-528  DR ORG; Eukaryota; Metazoa; Arthropoda; Crustacea; Branchiopoda; Phyllopoda; Diplostraca; Cladocera; Anomopoda; Daphniidae; Daphnia; Daphnia magna; 
#=GF SQ 9
Q9FPW0/393-727              ----------QLRDAGYTKLANEVELAKATRFMGQKQFDKAVGVFKDFEKKEP-RVKARAATNLAFLYFLEGETDQADKYSEMALKSDRYNARAYVNKGCVLVERGDLEGARSLFNEAAGIDPYCVEAIYNLGLVSQRLNELPYALAAFKKLHNMVPDNVEVIHQIATTYDMMGDFKNAVKWFELLTSLVSNDPGVLARLGAIHARFDDEAKALHYYQESHRVYPVNMDVISWLGAYHVKSEVYEKAMPFFDLASKIQPQEVKWALMVASCYRRTNNLPAALGKYKQIHTQHPDNVECLRYLVHLCSELGRRAEAAEYMTKLKKAEKAAVPEATTAAAPAAAAAGS
E9HYY9/380-717              FSVGYQWCVEAIKESTHNHLADDLEINKAVLFLRQKDVALATETLRSFEKRSS-RMATNAAVNLSTIYYLQGDIASAEKYAEVARDSDPYNAAAFVCLGNCSLRRADYNKARDFFLFALDNDAACVEALYNLGLTYRSTNQLEKSLEQFVKLQMVLRHQPEVLFQVASLNEELGNDEQAIEWYLQVHTVVPSDEGVHQKLGETFDRLGDRQQAFQYYSDSYRHYPSNLEVIRWLAAYFTEMHVPEKAIALYERAGQMRPNEAQWPLAVASCTQRVGNYHKALQILKSTRSKFPENIECLRALIRLCTDLGLK-EAGDYASDLRKLEHSQNEASQEN-----KRTG-
A8JCJ2/393-727              ----------QLRDAGYTKLANEVELAKATRFMGQKQFDKAVGVFKDFEKKEP-RVKARAATNLAFLYFLEGETDQADKYSEMALKSDRYNARAYVNKGCVLVERGDLEGARSLFNEAAGIDPYCVEAIYNLGLVSQRLNELPYALAAFKKLHNMVPDNVEVIHQIATTYDMMGDFKNAVKWFELLTSLVSNDPGVLARLGAIHARFDDEAKALHYYQESHRVYPVNMDVISWLGAYHVKSEVYEKAMPFFDLASKIQPQEVKWALMVASCYRRTNNLPAALGKYKQIHTQHPDNVECLRYLVHLCSELGRRAEAAEYMTKLKKAEKAAVPEATTAAAPAAAAAGS
A0A2K1ITM0/446-777          ---------EGLKDQQYAALANEMELEKAIQHLHRRDFTQAIVLLKDFEKKEK-DLKARAATNLSFLYFLEGDISNAEKHAEVAVKTNRYNAQALVNQGNCLYSRGRVEEAKAVYQEAAEVELDCVEAVYNLGLCHKRLGALGDALSTFKKLSNSIPNSIEVLFQVGDVNGLMGNIKQAIKCLEIVNTRTMHDPGVLAMLGRLHAKCDDEPKALYYYSESHRVYPANMDITSWLGAYYVKNEVYEKAMPFFDLASKLQPTEIKWQLMVASCHRRTGAHTEALAKYKAILSKHPDNTECLRYLLHMCTGLGRRDEVRTYEAQLRKAEMELASESRSHLLRLES----
A9T1R9/326-660              -------VVEGLKDQQYAALANEMELEKAIQHLHRRDFTQAIVLLKDFEKKEK-DLKARAATNLSFLYFLEGDISNAEKHAEVAVKTNRYNAQALVNQGNCLYSRGRVEEAKAVYQEAAEVELDCVEAVYNLGLCHKRLGALGDALSTFKKLSNSIPNSIEVLFQVGDVNGLMGNIKQAIKCLEIVNTRTMHDPGVLAMLGRLHAKCDDEPKALYYYSESHRVYPANMDITSWLGAYYVKNEVYEKAMPFFDLASKLQPTEIKWQLMVASCHRRTGAHTEALAKYKAILSKHPDNTECLRYLLHMCTGLGRRDEVRTYEAQLRKAEMELASESRSHLLRLESA---
A0CZI1/356-673              ----YEWILEQLKNSTFPEAETEIEICKAMAHLKKKNIEKSIETLKGLRKKGQINYGSHCYKHLFF----------AEKYAEIAITYDRYNAKALVNRGNCLYVKNEFLRAKEQYLEAIGVEADCIEALYNLAYVNRKLNMFVESLQALDKLQTIVCI-PEVLYQMATLYEMTGNSKQAMKWYLELLNKVPNDPNILARLGSLFAREDDEPQALHYFLESYRILPTNIDTISWLGVYYVKQEMYEKASLYFERAAQVQTRDEKWKLMVASCYRRMGHFQKALGTYQKIYSDYPDNIECLRFLVQLCREMGLPYE--EYAGQLRKLEREME-----------MIEGY
D8TVP1/390-725              --------CEQLREAGYTKLANEVELAKATRFMGQKQFDKAVSVFKEFEKKEP-RVKARAATNLAFLYFLEGETDQADKYSEMALKSDRYNARAYVNKGCVLVERGDLEGARSLFNEGAGIDPYCVEAIFNLGLVSQRLNELTYALAAFKKLYNMVPDNVEVIHQIATTYDMMGDFKNAVKWFEMLTSLVPNDPGVLARLGAIHARFDDEAKALHYYQEAHRVYPVNMDVISWLGAYHVKSEVYEKAMPFFDLASKIQPQEVKWALMVASCYRRTNNLPGALAKYKQIHAAHPENVECLRYLVHLCSELGRRAEAAEYMTKLKKAEKAAMPDAATMAAAAAPVAA-
A0A150GYD8/390-721          ------------REAGYIKLANEVELAKATRFMGQKQFDKAVGVFKEFEKKEP-RVKARAATNLAFLYFLEGETDQADKYSEMALKSDRYNARAYVNKGCVLVDRGDLESARNLFNEAAGIDPYCVEAIYNLGLVSQRLNELPYALAAFKKLHNMVPDNVEVIHQIATTYDMMGDFKNAVKWFEMLTSMVPNDPGVLARLGAIHARFDDEAKALHYYQESHRVYPVNMDVISWLGAYHVKSETYEKAMPFFDLASKIQPQEVKWALMVASCYRRTNNLPGALAKYKQIHSAHPDNVECLRYLVHLCSELGRRAEAGEYMTKLKKAEKAAVPEATATAAAMQQQPA-
A0A0P5N488/198-528          -TVGYQWCVEAIKESTHNHLADDLEINKAVLFLRQKDVAQATETLRSFEKRSN-KMATNAAVNLSTIYYLQGDVASAEKYAEVARDSDPYNAAAFVCLGNCSLRRSDFNKAKDFFLCALDNDAACVEALYNLGLTYRSTNQVEKSMEQFVKLQMVLRHQPEVLFQIANLNEDLGNDEQAIEWYLQVHTVVPSDEGVLQKLGETFDRLGDRQQAFQYYSDSYRHYPSNLEVIRWLASYYTEMHVPEKAISLYERAGQMRPNEVQWQLAVASCTQRVGNYHKALQILKSTRSKFPENIECLRALIRLCTDLGLK-EAGDYASDLRKLEHSQNETIQ------------
#=GC scorecons              0000101014357644633775759639943564675545753467477975304445576479454656464333979769593457699949596395554375544396347347554743979958997744556636336734749944454334996596644554596265966654363536459577765993456736964696598477794794967666996696663665999556774956567474694969999469555444994467364645979599994966794579451943593449795944332332211111121120
#=GC scorecons_70           ____________*___*__**_*_**_**___*__*____*___**_****________**_**___*_*_*____****_*_*___*_***_*_*__*_____*_____**__*__*___*__****_*****_____*_*___*__*_**________***_*_*______**_*_*_**_______*__*_***__**____*_***_***_**_****_**_*_*_*_***_****_**_***___**_*_*_**_*_**_*_****_**______**___*_*_*__***_****_*__**__**___*___*___***_*____________________
#=GC scorecons_80           ______________________*_*__**______*____*____*_****___________**____________*_**_*_*_____***_*_*__*_____*_____*___*__*______****_****____________*__*_**________**__*________*____*_____________*_**___**____*__*___*__**_**_*__*_*_*___**__*_______***___*__*____*_*__*_*_****__*______**___*______*_*_****_*__**__**___*___*___*_*_*____________________
#=GC scorecons_90           ________________________*__**____________________*_____________*____________*_*__*_*_____***_*_*__*___________*_____________*_**_***__________________**________**__*________*____*_____________*______**_______*___*__**____*__*_*_____**__*_______***______*_________*_*_****__*______**__________*_*_****_*___*___*___*___*___*_*_*____________________
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