# STOCKHOLM 1.0
#=GF ID 1.25.40.10/FF/001026
#=GF DE CTR9 homolog, Paf1/RNA polymerase II complex component
#=GF AC 1.25.40.10/FF/001026
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 38.433
#=GS A3KDM3/299-617      AC A3KDM3
#=GS A3KDM3/299-617      OS Danio rerio
#=GS A3KDM3/299-617      DE CTR9 homolog, Paf1/RNA polymerase II complex component
#=GS A3KDM3/299-617      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Actinopterygii; Actinopteri; Neopterygii; Teleostei; Otomorpha; Ostariophysi; Cypriniphysae; Cypriniformes; Cyprinoidei; Cyprinidae; Danio; Danio rerio; 
#=GS A3KDM3/299-617      DR GO; GO:0001756; GO:0005634; GO:0007507; GO:0014032; GO:0016593; GO:0043473; 
#=GS D6WC33/300-616      AC D6WC33
#=GS D6WC33/300-616      OS Tribolium castaneum
#=GS D6WC33/300-616      DE RNA polymerase-associated protein CTR9 homolog-like Protein
#=GS D6WC33/300-616      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga; Cucujiformia; Tenebrionoidea; Tenebrionidae; Tribolium; Tribolium castaneum; 
#=GS B7PDX5/300-620      AC B7PDX5
#=GS B7PDX5/300-620      OS Ixodes scapularis
#=GS B7PDX5/300-620      DE Tpr repeat nuclear phosphoprotein, putative
#=GS B7PDX5/300-620      DR ORG; Eukaryota; Metazoa; Arthropoda; Chelicerata; Arachnida; Acari; Parasitiformes; Ixodida; Ixodoidea; Ixodidae; Ixodinae; Ixodes; Ixodes scapularis; 
#=GS A0A452S4X8/299-617  AC A0A452S4X8
#=GS A0A452S4X8/299-617  OS Ursus americanus
#=GS A0A452S4X8/299-617  DE CTR9 homolog, Paf1/RNA polymerase II complex component
#=GS A0A452S4X8/299-617  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ursus; Ursus americanus; 
#=GS A0A226MY29/286-617  AC A0A226MY29
#=GS A0A226MY29/286-617  OS Callipepla squamata
#=GS A0A226MY29/286-617  DE Uncharacterized protein
#=GS A0A226MY29/286-617  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Aves; Neognathae; Galloanserae; Galliformes; Odontophoridae; Callipepla; Callipepla squamata; 
#=GS G3HYL1/299-614      AC G3HYL1
#=GS G3HYL1/299-614      OS Cricetulus griseus
#=GS G3HYL1/299-614      DE RNA polymerase-associated protein CTR9-like
#=GS G3HYL1/299-614      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Cricetidae; Cricetinae; Cricetulus; Cricetulus griseus; 
#=GS G1P6J0/300-615      AC G1P6J0
#=GS G1P6J0/300-615      OS Myotis lucifugus
#=GS G1P6J0/300-615      DE Uncharacterized protein
#=GS G1P6J0/300-615      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Laurasiatheria; Chiroptera; Microchiroptera; Vespertilionidae; Myotis; Myotis lucifugus; 
#=GS A0A3Q4MNI7/299-616  AC A0A3Q4MNI7
#=GS A0A3Q4MNI7/299-616  OS Neolamprologus brichardi
#=GS A0A3Q4MNI7/299-616  DE Uncharacterized protein
#=GS A0A3Q4MNI7/299-616  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Actinopterygii; Actinopteri; Neopterygii; Teleostei; Euteleosteomorpha; Cichlomorphae; Cichliformes; Cichlidae; Pseudocrenilabrinae; Lamprologini; Neolamprologus; Neolamprologus brichardi; 
#=GS A0A1Z5KUV4/299-615  AC A0A1Z5KUV4
#=GS A0A1Z5KUV4/299-615  OS Ornithodoros moubata
#=GS A0A1Z5KUV4/299-615  DE RNA polymerase-associated protein CTR9
#=GS A0A1Z5KUV4/299-615  DR ORG; Eukaryota; Metazoa; Arthropoda; Chelicerata; Arachnida; Acari; Parasitiformes; Ixodida; Ixodoidea; Argasidae; Ornithodoros; Ornithodoros moubata; 
#=GF SQ 9
A3KDM3/299-617              TEVEAMQAESCYQLARSFHVQEDYDQAFQYYYQATQFASSTFVLPFFGLGQMYVYRRDKENAAQCFEKVLKAYPNNYETMKILGSLYATSDDQEKRDIAKEHLKKVTVQYSDDVEAWIELAQILEQTDIQGALSAYGTATRILQEKVQADVPPEILNNLGALHFRLGNLGEAKKYFLASLERAKAEGEHDEHYYNAISVTTSYNLARLYEAMCEFHEAEKLYKNILREHPNYVDCYLRLGAMARDKGNFYEASDWFKEALQINQDHPDAWSLIGNLHLAKQEWGPGQKKFERILKQPSTQNDTYSMLALGNVWLQTLHQ---------------
D6WC33/300-616              --NEAMRAESCYQLARAFHVQGDYDQAFQYYYQATQFAPTAFVLPHFGLGQMYIYRGDAENAAQCFEKVLKAQPGNYETMKILGSLYANSSSQSKRDIAKNHLKKVTEQFPDDIEAWIELAQILEQSDLQGSLNAYGTAIQILNKDVQADIPTEILNNVGALHYRLNNLEEAKKNLEEALTRAKTEAEHDPQYYNSISVTITYNLARLNEALCLFDKSEKLYKDILKERPNYVDCYLRLGCMARDKGHIYEASDWFKEALRFNTEHPDAWSLLGNLHLAKAEWGPGQKKYERILKNPATSQDSYSLIVLGNVWLQTLHQ---------------
B7PDX5/300-620              --NEAMRAESCYQLARSFHVQEDFDQAFQYYYQATQFAPTSFVLPHFGLGQMYIFRGDVDNAAQCFEKVLKAQPGNYETMKILGSLYANSSSQSKRDQAKTHLKKVTEQFPEDVEAWIELAQILEQSDVQAALSAYGTATRLLQDKVKADIPPEILSNVGALHFRMGNLQEARRYYEASLERSRTESGNDEHYYGSISVTTTYNLARLYEALSLFDRAEQAYKNILREHPNYVDCYLRLGCMARDRGQIYEASDWFKEALQVNQEHPDSWSLIGNLHLAKQEWGPGQKKFERILK--GAPGDAYSLVALGNVWLQTLHQPMRDRD---------
A0A452S4X8/299-617          TEVEAMQAESCYQLARSFHVQEDYDQAFQYYYQATQFASSSFVLPFFGLGQMYIYRGDKENASQCFEKVLKAYPNNYETMKILGSLYAASEDQEKRDIAKGHLKKVTEQYPDDVEAWIELAQILEQTDIQGALSAYGTATRILQEKVQADVPPEILNNVGALHFRLGNLGEAKKYFLASLDRAKAEAEHDEHYYNAISVTTSYNLARLYEAMCEFHEAEKLYKNILREHPNYVDCYLRLGAMARDKGNFYEASDWFKEALQINQDHPDAWSLIGNLHLAKQEWGPGQKKFERILKQPSTQSDTYSMLALGNVWLQTLHQ---------------
A0A226MY29/286-617          --VEAMQAESCYQLARSFHVQEDYDQAFQYYYQATQFASSSFVLPFFGLGQMYIYRGDKENASQCFEKVLKAYPNNYETMKILGSLYAASEDQEKRDIAKGHLKKVTEQYPDDVEAWIELAQILEQTDIQGALSAYGTATRILQEKVQADVPPEILNNVGALHFRLGNLGEAKKYFLASLDRAKAEAEHDEHYYNAISVTTSYNLARLYEAMCEFHEAEKLYKNILREHPNYVDCYLRLGAMARDKGNFYEASDWFKEALQINQDHPDAWSLIGNLHLAKQEWGPGQKKFERILKQPSTQNDTYSMLALGNVWLQTLHQPTRDREKAFEFFVIS
G3HYL1/299-614              TEVEAMQAESCYQLARSFHVQEDYDQAFQYYYQATQFASSSFVLPFFGLGQMYIYRGDKENASQCFEKVLKAYPNNYETMKILGSLYAASEDQEKRDIAKGHLKKVTEQYPDDVEAWIELAQILEQTDIQGALSAYGTATRILQEKVQADVPPEILNNVGALHFRLGNLGEAKKYFLASLDRAKAEAEHDEHYYNAISVTTSYNLARLYEAMCEFHEAEKLYKNILREHPNYVDCYLRLGAMARDKGNFYEASDWFKEALQINQDHPDAWSLIGNLHLAKQEWGPGQKKFERILKQPSTQSDTYSMLALGNVWLQT------------------
G1P6J0/300-615              TEVEAMQAESCYQLARSFHVQEDYDQAFQYYYQATQFASSSFVLPFFGLGQMYIYRGDKENASQCFEKVLKAYPNNYETMKILGSLYAASEDQEKRDIAKGHLKKVTEQYPDDVEAWIELAQILEQTDIQGALSAYGTATRILQEKVQADVPPEILNNVGALHFRLGNLGEAKKYFLASLDRAKAEAEHDEHYYNAISVTTSYNLARLYEAMCEFHEAEKLYKNILREHPNYVDCYLRLGAMARDKGNFYEASDWFKEALQINQDHPDAWSLIGNLHLAKQEWGPGQKKFERILKQPSTQSDTYSMLALGNVWLQT------------------
A0A3Q4MNI7/299-616          TEVEAMQAESCYQLARSFHVQEDYDQAFQYYYQATQFASSTFVLPFFGLGQMYVYRRDKENAAQCFEKVLKAYPNNYETMKILGSLYATSDDQEKRDIAKLG-KLLTEQYPDDVEAWIELAQILEQTDIQGALSAYGTATRILQEKVQADVPPEILNNLGALHFRLGNLGEAKKYFLASLERAKAEGEHDEHYYNAISVTTSYNLARLYEAMCEFHEAEKLYKNILREHPNYVDCYLRLGAMARDKGNFYEASDWFKEALQINQDHPDAWSLIGNLHLAKQEWGPGQKKFERILKQPSTQNDTYSMLALGNVWLQTLHQ---------------
A0A1Z5KUV4/299-615          -ENEAMRAESCYQLARSFHVQEDFDQAFQYYYQATQFAPASFVLPQFGLGQMYIFRGDTDNAAQCFEKVLKAQPGNYETMKILGSLYANSSSQSKRDQAKTHLKKVTDQFPDDVEAWIELAQILEQSDVQAALNAYGTATRLLQENVKADIPPEILNNVGALHFRLGNLQEARKYYESSLERCRTEAENDEHYYSSISITTTYNLARLYESLSLFDKAEQSYKNILREHPNYVDCYLRLGCMARDRGQIYEASDWFKEALQVNQEHADSWSLIGNLHLAKQEWGPGQKKFERILK--GTPGDAYSLVALGNVWLQTLHQP--------------
#=GC scorecons              1249996999999999799997979999999999999955599994999999977969479969999999995959999999999999594595999599377978969787979999999999995969679699999776976596996979997979999897799499776645795957695769679955997975999999697664955796599799797999999999995999979559999999999975966979699979999999699999999899999345744959965799999999666100000000000000
#=GC scorecons_70           ___***_*******************************___****_************_***_*********_*_*************_*__*_***_**_*************************_*_****************_***********************_*****___**_*_*_*_*******__*****_***********_*__***_*******************_******__************_*********************************___*__*_***_*********__________________
#=GC scorecons_80           ___***_*******************************___****_**********_*_***_*********_*_*************_*__*_***_**_******_******************_*_*_**_*******_*___*_**_***************_**_****____**_*_*_*_*_*_***__*****_******_**___*__**__*******************_******__************_*__***_***********_**************___*__*_**__*********__________________
#=GC scorecons_90           ___***_*********_****_*_**************___****_*******__*_*__**_*********_*_*************_*__*_***_**___*__*_*___*_************_*_*__*_*****___*___*_**_*_***_*_****_*__**_**_______*_*___*___*__**__**_*__******_*____*___*__**_**_*_***********_****_*__***********__*__*_*_***_*******_********_*****______*_**___********__________________
//