# STOCKHOLM 1.0 #=GF ID 1.10.375.10/FF/000005 #=GF DE Gag-pro-pol polyprotein #=GF AC 1.10.375.10/FF/000005 #=GF TP FunFam #=GF DR CATH: v4.3 #=GF DR DOPS: 21.164 #=GS 4ph3B00/1-129 AC L0PI28 #=GS 4ph3B00/1-129 OS Bovine leukemia virus #=GS 4ph3B00/1-129 DE Gag-pro-pol polyprotein #=GS 4ph3B00/1-129 DR CATH; 4ph3; B:11-125; #=GS 4ph3B00/1-129 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Deltaretrovirus; Bovine leukemia virus; #=GS P25059/110-237 AC P25059 #=GS P25059/110-237 OS Bovine leukemia virus (AUSTRALIAN ISOLATE) #=GS P25059/110-237 DE Gag-Pro-Pol polyprotein #=GS P25059/110-237 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Deltaretrovirus; Bovine leukemia virus; #=GS P25059/110-237 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS 4ph3A00/1-129 AC L0PI28 #=GS 4ph3A00/1-129 OS Bovine leukemia virus #=GS 4ph3A00/1-129 DE Gag-pro-pol polyprotein #=GS 4ph3A00/1-129 DR CATH; 4ph3; A:12-126; #=GS 4ph3A00/1-129 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Deltaretrovirus; Bovine leukemia virus; #=GS 4ph2B00/1-134 AC L0PI28 #=GS 4ph2B00/1-134 OS Bovine leukemia virus #=GS 4ph2B00/1-134 DE Gag-pro-pol polyprotein #=GS 4ph2B00/1-134 DR CATH; 4ph2; B:1-127; #=GS 4ph2B00/1-134 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Deltaretrovirus; Bovine leukemia virus; #=GS 4ph2A00/1-134 AC L0PI28 #=GS 4ph2A00/1-134 OS Bovine leukemia virus #=GS 4ph2A00/1-134 DE Gag-pro-pol polyprotein #=GS 4ph2A00/1-134 DR CATH; 4ph2; A:1-127; #=GS 4ph2A00/1-134 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Deltaretrovirus; Bovine leukemia virus; #=GS 4ph0F01/1-127 AC A7KWZ1 #=GS 4ph0F01/1-127 OS Bovine leukemia virus #=GS 4ph0F01/1-127 DE Gag-pro-pol polyprotein #=GS 4ph0F01/1-127 DR CATH; 4ph0; F:1-127; #=GS 4ph0F01/1-127 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Deltaretrovirus; Bovine leukemia virus; #=GS 4ph0E01/1-123 AC A7KWZ1 #=GS 4ph0E01/1-123 OS Bovine leukemia virus #=GS 4ph0E01/1-123 DE Gag-pro-pol polyprotein #=GS 4ph0E01/1-123 DR CATH; 4ph0; E:1-123; #=GS 4ph0E01/1-123 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Deltaretrovirus; Bovine leukemia virus; #=GS 4ph0D01/1-124 AC A7KWZ1 #=GS 4ph0D01/1-124 OS Bovine leukemia virus #=GS 4ph0D01/1-124 DE Gag-pro-pol polyprotein #=GS 4ph0D01/1-124 DR CATH; 4ph0; D:1-124; #=GS 4ph0D01/1-124 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Deltaretrovirus; Bovine leukemia virus; #=GS 4ph0C01/1-124 AC A7KWZ1 #=GS 4ph0C01/1-124 OS Bovine leukemia virus #=GS 4ph0C01/1-124 DE Gag-pro-pol polyprotein #=GS 4ph0C01/1-124 DR CATH; 4ph0; C:1-124; #=GS 4ph0C01/1-124 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Deltaretrovirus; Bovine leukemia virus; #=GS 4ph0B01/1-124 AC A7KWZ1 #=GS 4ph0B01/1-124 OS Bovine leukemia virus #=GS 4ph0B01/1-124 DE Gag-pro-pol polyprotein #=GS 4ph0B01/1-124 DR CATH; 4ph0; B:1-124; #=GS 4ph0B01/1-124 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Deltaretrovirus; Bovine leukemia virus; #=GS 4ph0A01/1-124 AC A7KWZ1 #=GS 4ph0A01/1-124 OS Bovine leukemia virus #=GS 4ph0A01/1-124 DE Gag-pro-pol polyprotein #=GS 4ph0A01/1-124 DR CATH; 4ph0; A:1-124; #=GS 4ph0A01/1-124 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Deltaretrovirus; Bovine leukemia virus; #=GS P03361/110-238 AC P03361 #=GS P03361/110-238 OS Bovine leukemia virus (JAPANESE ISOLATE BLV-1) #=GS P03361/110-238 DE Gag-Pro-Pol polyprotein #=GS P03361/110-238 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Deltaretrovirus; Bovine leukemia virus; #=GS P03361/110-238 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS T2F9E0/4-132 AC T2F9E0 #=GS T2F9E0/4-132 OS Bovine leukemia virus #=GS T2F9E0/4-132 DE Gag polyprotein #=GS T2F9E0/4-132 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Deltaretrovirus; Bovine leukemia virus; #=GS P03344/110-234 AC P03344 #=GS P03344/110-234 OS Bovine leukemia virus (JAPANESE ISOLATE BLV-1) #=GS P03344/110-234 DE Gag polyprotein #=GS P03344/110-234 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Deltaretrovirus; Bovine leukemia virus; #=GS P25058/110-237 AC P25058 #=GS P25058/110-237 OS Bovine leukemia virus (AUSTRALIAN ISOLATE) #=GS P25058/110-237 DE Gag polyprotein #=GS P25058/110-237 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Deltaretrovirus; Bovine leukemia virus; #=GS Q85490/110-238 AC Q85490 #=GS Q85490/110-238 OS Bovine leukemia virus #=GS Q85490/110-238 DE Gag polyprotein #=GS Q85490/110-238 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Deltaretrovirus; Bovine leukemia virus; #=GS P0DOI1/110-237 AC P0DOI1 #=GS P0DOI1/110-237 OS Bovine leukemia virus (AUSTRALIAN ISOLATE) #=GS P0DOI1/110-237 DE Gag-Pro polyprotein #=GS P0DOI1/110-237 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Deltaretrovirus; Bovine leukemia virus; #=GS P0DOI0/110-238 AC P0DOI0 #=GS P0DOI0/110-238 OS Bovine leukemia virus (JAPANESE ISOLATE BLV-1) #=GS P0DOI0/110-238 DE Gag-Pro polyprotein #=GS P0DOI0/110-238 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Deltaretrovirus; Bovine leukemia virus; #=GS Q9WJP3/110-238 AC Q9WJP3 #=GS Q9WJP3/110-238 OS Bovine leukemia virus #=GS Q9WJP3/110-238 DE Pr66 #=GS Q9WJP3/110-238 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Deltaretrovirus; Bovine leukemia virus; #=GS O92812/110-238 AC O92812 #=GS O92812/110-238 OS Bovine leukemia virus #=GS O92812/110-238 DE RT-IN #=GS O92812/110-238 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Deltaretrovirus; Bovine leukemia virus; #=GS A7KWZ1/110-238 AC A7KWZ1 #=GS A7KWZ1/110-238 OS Bovine leukemia virus #=GS A7KWZ1/110-238 DE Gag-pro-pol polyprotein #=GS A7KWZ1/110-238 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Deltaretrovirus; Bovine leukemia virus; #=GS L0PI28/110-238 AC L0PI28 #=GS L0PI28/110-238 OS Bovine leukemia virus #=GS L0PI28/110-238 DE Gag-pro-pol polyprotein #=GS L0PI28/110-238 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Deltaretrovirus; Bovine leukemia virus; #=GS A0A0E3VNR8/110-238 AC A0A0E3VNR8 #=GS A0A0E3VNR8/110-238 OS Bovine leukemia virus #=GS A0A0E3VNR8/110-238 DE Polyprotein #=GS A0A0E3VNR8/110-238 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Deltaretrovirus; Bovine leukemia virus; #=GF SQ 23 4ph3B00/1-129 LPIISEGNRNRHRAWALRELQDIKKEIENKAPGSQVWIQTLRLAILQADPTPADLEQLXQYIASPVDQTAHMTSLTAAIAAAEAANTLQGFNPQNGTLTQQSAQPNAGDLRSQYQNLWLQAWK-NLPTRP------ P25059/110-237 -PIISEGNRNRHRAWALRELQDIKKEIENKAPGSQVWIQTLRLAILQADPTPADLEQLCQYIASPVDQTAHMTSLTAAI-AAEAANTLQGFNPQNGTLTQQSAQPNAGDLRSQYQNLWLQAWK-NLPTRPS----- 4ph3A00/1-129 LPIISEGNRNRHRAWALRELQDIKKEIENKAPGSQVWIQTLRLAILQADPTPADLEQLXQYIASPVDQTAHMTSLTAAIAAAEAANTLQGFNPQNGTLTQQSAQPNAGDLRSQYQNLWLQAWK-NLPTRP------ 4ph2B00/1-134 -PIISEGNRNRHRAWALRELQDIKKEIENKAPGSQVWIQTLRLAILQADPTPADLEQLCQYIASPVDQTAHMTSLTAAIAAAEAANTLQGFNPQNGTLTQQSAQPNAGDLRSQYQNLWLQAWK-NLPTRPHHHHHH 4ph2A00/1-134 -PIISEGNRNRHRAWALRELQDIKKEIENKAPGSQVWIQTLRLAILQADPTPADLEQLCQYIASPVDQTAHMTSLTAAIAAAEAANTLQGFNPQNGTLTQQSAQPNAGDLRSQYQNLWLQAWK-NLPTRPHHHHHH 4ph0F01/1-127 -PIISEGNRNRHRAWALRELQDIKKEIENKAPGSQVWIQTLRLAILQADPTPADLEQLCQYIASPVDQTAHMTSLTAAIAAAEAANTLQGFNPQNGTLTQQSAQPNAGDLRSQYQNLWLQAWK-NLPTR------- 4ph0E01/1-123 -PIISEGNRNRHRAWALRELQDIKKEIENKAPGSQVWIQTLRLAILQADPTPADLEQLCQYIASPVDQTAHMTSLTAAIAAAEAANTLQGFNPQNGTLTQQSAQPNAGDLRSQYQNLWLQAWK-N----------- 4ph0D01/1-124 -PIISEGNRNRHRAWALRELQDIKKEIENKAPGSQVWIQTLRLAILQADPTPADLEQLCQYIASPVDQTAHMTSLTAAIAAAEAANTLQGFNPQNGTLTQQSAQPNAGDLRSQYQNLWLQAWK-NL---------- 4ph0C01/1-124 -PIISEGNRNRHRAWALRELQDIKKEIENKAPGSQVWIQTLRLAILQADPTPADLEQLCQYIASPVDQTAHMTSLTAAIAAAEAANTLQGFNPQNGTLTQQSAQPNAGDLRSQYQNLWLQAWK-NL---------- 4ph0B01/1-124 -PIISEGNRNRHRAWALRELQDIKKEIENKAPGSQVWIQTLRLAILQADPTPADLEQLCQYIASPVDQTAHMTSLTAAIAAAEAANTLQGFNPQNGTLTQQSAQPNAGDLRSQYQNLWLQAWK-NL---------- 4ph0A01/1-124 -PIISEGNRNRHRAWALRELQDIKKEIENKAPGSQVWIQTLRLAILQADPTPADLEQLCQYIASPVDQTAHMTSLTAAIAAAEAANTLQGFNPQNGTLTQQSAQPNAGDLRSQYQNLWLQAWK-NL---------- P03361/110-238 -PIISEGNRNRHRAWALRELQDIKKEIENKAPGSQVWIQTLRLAILQADPTPADLEQLCQYIASPVDQTAHMTSLTAAIAAAEAANTLQGFNPKTGTLTQQSAQPNAGDLRSQYQNLWLQAGK-NLPTRPS----- T2F9E0/4-132 -PIISEGNRNRHRAWALRELQDIKKEIENKAPGSQVWIQTLRLAILQADPTPADLEQLCQYIASPVDQTAHMTSLTAAIAAAEAANTLQGFNPQNGTLTQQSAQPNAGDLRSQYQNLWLQAWK-NLPTRPS----- P03344/110-234 -PIISEGNRNRHRAWALRELQDIKKEIENKAPGSQVWIQTLRLAILQADPTPADLEQLCQYIASPVDQTAHMTSLTAAIAAAEAATPSRVLTPKTGTLTQQSAQPNAGDLRSQYQNLWLQAGKISL---------- P25058/110-237 -PIISEGNRNRHRAWALRELQDIKKEIENKAPGSQVWIQTLRLAILQADPTPADLEQLCQYIASPVDQTAHMTSLTAAI-AAEAANTLQGFNPKMGTLTQQSAQPNAGDLRSQYQNLWLQAWK-NLPTRPS----- Q85490/110-238 -PIISEGNRNRHRAWALRELQDIKKEIENKAPGSQVWIQTLRLAILQADPTPADLEQLCQYIASPVDQTAHMTSLTAAIAAAEAANTLQGFNPQNGTLTQQSAQPNAGDLRSQYQNLWLQAWK-NLPTRPS----- P0DOI1/110-237 -PIISEGNRNRHRAWALRELQDIKKEIENKAPGSQVWIQTLRLAILQADPTPADLEQLCQYIASPVDQTAHMTSLTAAI-AAEAANTLQGFNPKMGTLTQQSAQPNAGDLRSQYQNLWLQAWK-NLPTRPS----- P0DOI0/110-238 -PIISEGNRNRHRAWALRELQDIKKEIENKAPGSQVWIQTLRLAILQADPTPADLEQLCQYIASPVDQTAHMTSLTAAIAAAEAANTLQGFNPKTGTLTQQSAQPNAGDLRSQYQNLWLQAGK-NLPTRPS----- Q9WJP3/110-238 -PIISEGNRNRHRAWALRELQDIKKEIENKAPGSQVWIQTLRLAILQADPTPADLEQLCQYIASPVDQTAHMTSLTAAIAAAEAANTLQGFNPQNGTLTQQSAQPNAGDLRSQYQNLWLQAWK-NLPTRPS----- O92812/110-238 -PIISEGNRNRHRAWALRELQDIKKEIENKAPGSQVWIQTLRLAILQADPTPADLEQLCQYIASPVDQTAHMTSLTAAIAAAEAANTLQGFNPQNGTLTQQSAQPNAGDLRSQYQNLWLQAWK-NLPTRPS----- A7KWZ1/110-238 -PIISEGNRNRHRAWALRELQDIKKEIENKAPGSQVWIQTLRLAILQADPTPADLEQLCQYIASPVDQTAHMTSLTAAIAAAEAANTLQGFNPQNGTLTQQSAQPNAGDLRSQYQNLWLQAWK-NLPTRPS----- L0PI28/110-238 -PIISEGNRNRHRAWALRELQDIKKEIENKAPGSQVWIQTLRLAILQADPTPADLEQLCQYIASPVDQTAHMTSLTAAIAAAEAANTLQGFNPQNGTLTQQSAQPNAGDLRSQYQNLWLQAWK-NLPTRPS----- A0A0E3VNR8/110-238 -PIISEGNRNRHRAWALRELQDIKKEIENKAPGSQVWIQTLRLAILQADPTPADLEQLCQYIASPVDQTAHMTSLTATIAAAEAANTLQGFNPQNGTLAQQSAQPNAGDLRSQYQNLWLQAWK-NLPTRPS----- #=GC scorecons 0999999999999999999999999999999999999999999999999999999999799999999999999999989699999777878797699989999999999999999999999690783333100000 #=GC scorecons_70 _**************************************************************************************************************************_**__________ #=GC scorecons_80 _******************************************************************************_*************__**************************_*_**__________ #=GC scorecons_90 _*********************************************************_********************_*****_______*__**************************_*_____________ //