# STOCKHOLM 1.0
#=GF ID 1.10.10.10/FF/000698
#=GF DE RNA polymerase sigma factor
#=GF AC 1.10.10.10/FF/000698
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 57.251
#=GS Q9LD95/461-544      AC Q9LD95
#=GS Q9LD95/461-544      OS Arabidopsis thaliana
#=GS Q9LD95/461-544      DE RNA polymerase sigma factor sigF, chloroplastic
#=GS Q9LD95/461-544      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS Q9LD95/461-544      DR GO; GO:0005515; GO:0006352; GO:0009507; GO:0009536; GO:0016987; GO:0045893; GO:0071482; GO:0071483; GO:0090351; 
#=GS Q84LK8/487-562      AC Q84LK8
#=GS Q84LK8/487-562      OS Oryza sativa Japonica Group
#=GS Q84LK8/487-562      DE RNA polymerase sigma factor
#=GS Q84LK8/487-562      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa; 
#=GS Q84LK8/487-562      DR GO; GO:0009536; GO:0016987; 
#=GS M4DL32/447-530      AC M4DL32
#=GS M4DL32/447-530      OS Brassica rapa subsp. pekinensis
#=GS M4DL32/447-530      DE RNA polymerase sigma factor
#=GS M4DL32/447-530      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica rapa; Brassica rapa subsp. pekinensis; 
#=GS V4MIB9/460-543      AC V4MIB9
#=GS V4MIB9/460-543      OS Eutrema salsugineum
#=GS V4MIB9/460-543      DE RNA polymerase sigma factor
#=GS V4MIB9/460-543      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Eutremeae; Eutrema; Eutrema salsugineum; 
#=GS R0HNL5/466-546      AC R0HNL5
#=GS R0HNL5/466-546      OS Capsella rubella
#=GS R0HNL5/466-546      DE RNA polymerase sigma factor
#=GS R0HNL5/466-546      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Capsella; Capsella rubella; 
#=GS A0A0D3C4P0/455-538  AC A0A0D3C4P0
#=GS A0A0D3C4P0/455-538  OS Brassica oleracea var. oleracea
#=GS A0A0D3C4P0/455-538  DE RNA polymerase sigma factor
#=GS A0A0D3C4P0/455-538  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica oleracea; Brassica oleracea var. oleracea; 
#=GS E4MX68/461-544      AC E4MX68
#=GS E4MX68/461-544      OS Eutrema halophilum
#=GS E4MX68/461-544      DE RNA polymerase sigma factor
#=GS E4MX68/461-544      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Eutremeae; Eutrema; Eutrema halophilum; 
#=GS A0A078JL81/252-335  AC A0A078JL81
#=GS A0A078JL81/252-335  OS Brassica napus
#=GS A0A078JL81/252-335  DE BnaAnng21640D protein
#=GS A0A078JL81/252-335  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica napus; 
#=GS D7LJA3/460-543      AC D7LJA3
#=GS D7LJA3/460-543      OS Arabidopsis lyrata subsp. lyrata
#=GS D7LJA3/460-543      DE RNA polymerase sigma factor
#=GS D7LJA3/460-543      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis lyrata; Arabidopsis lyrata subsp. lyrata; 
#=GS A0A0D9X5Q8/478-553  AC A0A0D9X5Q8
#=GS A0A0D9X5Q8/478-553  OS Leersia perrieri
#=GS A0A0D9X5Q8/478-553  DE RNA polymerase sigma factor
#=GS A0A0D9X5Q8/478-553  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Leersia; Leersia perrieri; 
#=GS I1QGT9/487-562      AC I1QGT9
#=GS I1QGT9/487-562      OS Oryza glaberrima
#=GS I1QGT9/487-562      DE RNA polymerase sigma factor
#=GS I1QGT9/487-562      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza glaberrima; 
#=GS A0A0D3GXV6/349-424  AC A0A0D3GXV6
#=GS A0A0D3GXV6/349-424  OS Oryza barthii
#=GS A0A0D3GXV6/349-424  DE RNA polymerase sigma factor
#=GS A0A0D3GXV6/349-424  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza barthii; 
#=GS V4M7N8/461-544      AC V4M7N8
#=GS V4M7N8/461-544      OS Eutrema salsugineum
#=GS V4M7N8/461-544      DE RNA polymerase sigma factor
#=GS V4M7N8/461-544      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Eutremeae; Eutrema; Eutrema salsugineum; 
#=GS A0A078G1I1/458-541  AC A0A078G1I1
#=GS A0A078G1I1/458-541  OS Brassica napus
#=GS A0A078G1I1/458-541  DE RNA polymerase sigma factor
#=GS A0A078G1I1/458-541  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica napus; 
#=GS A0A0D9X5Q9/423-498  AC A0A0D9X5Q9
#=GS A0A0D9X5Q9/423-498  OS Leersia perrieri
#=GS A0A0D9X5Q9/423-498  DE RNA polymerase sigma factor
#=GS A0A0D9X5Q9/423-498  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Leersia; Leersia perrieri; 
#=GF SQ 15
Q9LD95/461-544              ETPTMSVGKQLMRNHVRNLLNVLSPKERRIIKLRFGIDGGKQRSLSEIGEIYGLSKERVRQLESRALYRLKQNMNSHGLHAYAD--
Q84LK8/487-562              -PPDLSVDRMMMRQQVRDFLGILSPREKEIIEHRFGIHDGEPKTLHVIGDMFGLSKERIRQLQNRALEKLKRSASLQ---------
M4DL32/447-530              ETPDMSVGKQMMRNHVRNLLNVLSPKERKIIKLRFGIDGGKQRSLSEIGEIYGLSKERVRQLESRALYRLKQNMNSHGLNAYAD--
V4MIB9/460-543              ETPSMSVGKQLMRNHVRNLLNVLSPKEKRIIKLRFGIDGGKQRSLSEIGEIYGLSKERVRQLESRALYRLKQNMSSHGLNAYAD--
R0HNL5/466-546              -----SVGKQLMRNHVRNLLNVLSPKERSIIKLRFGIEGGKQRSLSEIGEIYGLSKERVRQLESRALYRLKQNMSSHGLHAYADLL
A0A0D3C4P0/455-538          ETPDMSVGKQMMRNHVRNLLNVLSPKERKIIKLRFGIDGGKQRSLSEIGEIYGLSKERVRQLESRALYRLKQNMNSHGLNAYAD--
E4MX68/461-544              ETPSMSVGKQLMRNHVRNLLNVLSPKEKRIIKLRFGIDGGKQRSLSEIGEIYGLSKERVRQLESRALYRLKQNMSSHGLNAYAD--
A0A078JL81/252-335          ETPDMSVGKQMMRNHVRNLLNVLSPKERKIIKLRFGIDGGKQRSLSEIGEIYGLSKERVRQLESRALYRLKQNMNSHGLNAYAD--
D7LJA3/460-543              ETPTMSVGKQMMRNHVRNLLNVLSPKERRIIKLRFGIDGGKQRSLSEIGEIYGLSKERVRQLESRALYRLKQHMNSHGLHAYAD--
A0A0D9X5Q8/478-553          -PPDLSVDRMMMKQQVRDFLGILSPREKEIIEHRFGMHDGQPKTLHVIGDMFGLSKERIRQLQNRALEKLKTNASTQ---------
I1QGT9/487-562              -PPDLSVDRMMMRQQVRDFLGILSPREKEIIEHRFGIHDGEPKTLHVIGDMFGLSKERIRQLQNRALEKLKRSASLQ---------
A0A0D3GXV6/349-424          -PPDLSVDRMMMRQQVRDFLGILSPREKEIIEHRFGIHDGEPKTLHVIGDMFGLSKERIRQLQNRALEKLKRSASLQ---------
V4M7N8/461-544              ETPSMSVGKQLMRNHVRNLLNVLSPKEKRIIKLRFGIDGGKQRSLSEIGEIYGLSKERVRQLESRALYRLKQNMSSHGLNAYAD--
A0A078G1I1/458-541          ETPDMSVGKQMMRNHVRNLLNVLSPKERKIIKLRFGIDGGKQRSLSEIGEIYGLSKERVRQLESRALYRLKQNMNSHGLNAYAD--
A0A0D9X5Q9/423-498          -PPDLSVDRMMMKQQVRDFLGILSPREKEIIEHRFGMHDGQPKTLHVIGDMFGLSKERIRQLQNRALEKLKTNASTQ---------
#=GC scorecons              15755996757975699669579997974996599975695576955997679999997999669994799565646221222200
#=GC scorecons_70           __*__**_*_***_******_*******_**__****__*__*_*__****************_***_***___*_*_________
#=GC scorecons_80           __*__**____**__**__*__***_*__**__****__*____*__**__*******_***__***__**_______________
#=GC scorecons_90           _____**____*___**__*__***_*__**__***___*____*__**___******_***__***__**_______________
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