# STOCKHOLM 1.0
#=GF ID 1.10.10.10/FF/000612
#=GF DE RNA polymerase sigma factor FecI
#=GF AC 1.10.10.10/FF/000612
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 41.502
#=GS Q9I444/108-171      AC Q9I444
#=GS Q9I444/108-171      OS Pseudomonas aeruginosa PAO1
#=GS Q9I444/108-171      DE Probable sigma-70 factor, ECF subfamily
#=GS Q9I444/108-171      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas aeruginosa group; Pseudomonas aeruginosa; 
#=GS Q9I444/108-171      DR GO; GO:0005829; GO:0016987; GO:0034756; 
#=GS Q9I193/93-156       AC Q9I193
#=GS Q9I193/93-156       OS Pseudomonas aeruginosa PAO1
#=GS Q9I193/93-156       DE FpvI
#=GS Q9I193/93-156       DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas aeruginosa group; Pseudomonas aeruginosa; 
#=GS Q9I193/93-156       DR GO; GO:0016987; 
#=GS A0FHT5/108-171      AC A0FHT5
#=GS A0FHT5/108-171      OS uncultured bacterium
#=GS A0FHT5/108-171      DE Putative ECF sigma factor protein
#=GS A0FHT5/108-171      DR ORG; Bacteria; uncultured bacterium; 
#=GS A0A157WM39/93-156   AC A0A157WM39
#=GS A0A157WM39/93-156   OS Enterobacter cloacae
#=GS A0A157WM39/93-156   DE RNA polymerase sigma factor, sigma-70 family
#=GS A0A157WM39/93-156   DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex; Enterobacter cloacae; 
#=GS A0A335NAU2/93-156   AC A0A335NAU2
#=GS A0A335NAU2/93-156   OS Acinetobacter baumannii
#=GS A0A335NAU2/93-156   DE Alternative RNAP sigma factor
#=GS A0A335NAU2/93-156   DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii complex; Acinetobacter baumannii; 
#=GS A0A2V2TAU3/93-156   AC A0A2V2TAU3
#=GS A0A2V2TAU3/93-156   OS Pseudomonas sp. RW410
#=GS A0A2V2TAU3/93-156   DE RNA polymerase subunit sigma
#=GS A0A2V2TAU3/93-156   DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas sp. RW410; 
#=GS A0A448BKZ5/93-156   AC A0A448BKZ5
#=GS A0A448BKZ5/93-156   OS Pseudomonas fluorescens
#=GS A0A448BKZ5/93-156   DE RNA polymerase sigma factor
#=GS A0A448BKZ5/93-156   DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas fluorescens group; Pseudomonas fluorescens; 
#=GS A0A1F0I2X4/108-171  AC A0A1F0I2X4
#=GS A0A1F0I2X4/108-171  OS Pseudomonas sp. HMSC065H01
#=GS A0A1F0I2X4/108-171  DE RNA polymerase subunit sigma
#=GS A0A1F0I2X4/108-171  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas sp. HMSC065H01; 
#=GS A0A1S1C116/108-171  AC A0A1S1C116
#=GS A0A1S1C116/108-171  OS Pseudomonas sp. HMSC059F05
#=GS A0A1S1C116/108-171  DE RNA polymerase subunit sigma
#=GS A0A1S1C116/108-171  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas sp. HMSC059F05; 
#=GS A0A0H2ZBF6/93-156   AC A0A0H2ZBF6
#=GS A0A0H2ZBF6/93-156   OS Pseudomonas aeruginosa UCBPP-PA14
#=GS A0A0H2ZBF6/93-156   DE Putative sigma-70 factor, ECF subfamily
#=GS A0A0H2ZBF6/93-156   DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas aeruginosa group; Pseudomonas aeruginosa; 
#=GS A0A2U2XQY5/93-156   AC A0A2U2XQY5
#=GS A0A2U2XQY5/93-156   OS Pseudomonas aeruginosa
#=GS A0A2U2XQY5/93-156   DE Putative RNA polymerase sigma factor FecI
#=GS A0A2U2XQY5/93-156   DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas aeruginosa group; Pseudomonas aeruginosa; 
#=GS W1MIZ1/93-156       AC W1MIZ1
#=GS W1MIZ1/93-156       OS Pseudomonas aeruginosa VRFPA03
#=GS W1MIZ1/93-156       DE RNA polymerase sigma factor
#=GS W1MIZ1/93-156       DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas aeruginosa group; Pseudomonas aeruginosa; 
#=GS A0A1C7BN00/108-171  AC A0A1C7BN00
#=GS A0A1C7BN00/108-171  OS Pseudomonas aeruginosa BL04
#=GS A0A1C7BN00/108-171  DE RNA polymerase ECF-subfamily sigma-70 factor
#=GS A0A1C7BN00/108-171  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas aeruginosa group; Pseudomonas aeruginosa; 
#=GS A0A2V2TB80/108-171  AC A0A2V2TB80
#=GS A0A2V2TB80/108-171  OS Pseudomonas sp. RW410
#=GS A0A2V2TB80/108-171  DE RNA polymerase sigma factor
#=GS A0A2V2TB80/108-171  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas sp. RW410; 
#=GS A0A072ZIJ9/108-171  AC A0A072ZIJ9
#=GS A0A072ZIJ9/108-171  OS Pseudomonas aeruginosa
#=GS A0A072ZIJ9/108-171  DE DNA-directed RNA polymerase sigma-70 factor
#=GS A0A072ZIJ9/108-171  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas aeruginosa group; Pseudomonas aeruginosa; 
#=GS A0A157WQC7/108-171  AC A0A157WQC7
#=GS A0A157WQC7/108-171  OS Enterobacter cloacae
#=GS A0A157WQC7/108-171  DE RNA polymerase sigma factor, sigma-70 family
#=GS A0A157WQC7/108-171  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex; Enterobacter cloacae; 
#=GS V6AIG9/108-171      AC V6AIG9
#=GS V6AIG9/108-171      OS Pseudomonas aeruginosa MH27
#=GS V6AIG9/108-171      DE Sigma-70 factor, ECF subfamily
#=GS V6AIG9/108-171      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas aeruginosa group; Pseudomonas aeruginosa; 
#=GS A0A3S4RMN7/108-171  AC A0A3S4RMN7
#=GS A0A3S4RMN7/108-171  OS Pseudomonas fluorescens
#=GS A0A3S4RMN7/108-171  DE Putative DNA-binding protein
#=GS A0A3S4RMN7/108-171  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas fluorescens group; Pseudomonas fluorescens; 
#=GS A0A0H2Z8G6/108-171  AC A0A0H2Z8G6
#=GS A0A0H2Z8G6/108-171  OS Pseudomonas aeruginosa UCBPP-PA14
#=GS A0A0H2Z8G6/108-171  DE Putative sigma-70 factor, ECF subfamily
#=GS A0A0H2Z8G6/108-171  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas aeruginosa group; Pseudomonas aeruginosa; 
#=GS A0A1G5F863/108-171  AC A0A1G5F863
#=GS A0A1G5F863/108-171  OS Acinetobacter baumannii
#=GS A0A1G5F863/108-171  DE RNA polymerase sigma factor FecI
#=GS A0A1G5F863/108-171  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii complex; Acinetobacter baumannii; 
#=GF SQ 20
Q9I444/108-171              QQQRLSHLAAALAELPPRRREAFVLHKFDGLSQVEVAERMGISLSMVEKHIASALLHCKRRLGQ-
Q9I193/93-156               -GQRLDNLQRALAELPAICRSSFLLRKLDGLSHSQIAEHLNISRSLVEKHIVNAMKHCRVRMREW
A0FHT5/108-171              QQQRLSHLAAALAELPPRRREAFVLHKFDGLSQVEVAERMGISLSMVEKHIASALLHCKRRLGQ-
A0A157WM39/93-156           -GQRLDNLQRALAELPAICRSSFLLRKLDGLSHSQIAEHLNISRSLVEKHIVNAMKHCRVRMREW
A0A335NAU2/93-156           -GQRLDNLQRALAELPAICRSSFLLRKLDGLSHSQIAEHLNISRSLVEKHIVNAMKHCRVRMREW
A0A2V2TAU3/93-156           -GQRLDNLQRALAELPAICRSSFLLRKLDGLSHSQIAEHLNISRSLVEKHIVNAMKHCRVRMREW
A0A448BKZ5/93-156           -GQRLDNLQRALAELPAICRSSFLLRKLDGLSHSQIAEHLNISRSLVEKHIVNAMKHCRVRMREW
A0A1F0I2X4/108-171          QQQRLSHLAAALAELPPRRREAFVLHKFDGLSQVEVAERMGISLSMVEKHIASALLHCKRRLGQ-
A0A1S1C116/108-171          QQQRLSHLAAALAELPPRRREAFVLHKFDGLSQVEVAERMGISLSMVEKHIASALLHCKRRLGQ-
A0A0H2ZBF6/93-156           -GQRLDNLQRALAELPAICRSSFLLRKLDGLSHSQIAEHLNISRSLVEKHIVNAMKHCRVRMREW
A0A2U2XQY5/93-156           -GQRLDNLQRALAELPAICRSSFLLRKLDGLSHSQIAEHLNISRSLVEKHIVNAMKHCRVRMREW
W1MIZ1/93-156               -GQRLDNLQRALAELPAICRSSFLLRKLDGLSHSQIAEHLNISRSLVEKHIVNAMKHCRVRMREW
A0A1C7BN00/108-171          QQQRLSHLAAALAELPPRRREAFVLHKFDGLSQVEVAERMGISLSMVEKHIASALLHCKRRLGQ-
A0A2V2TB80/108-171          QQQRLSHLAAALAELPPRRREAFVLHKFDGLSQVEVAERMGISLSMVEKHIASALLHCKRRLGQ-
A0A072ZIJ9/108-171          QQQRLSHLAAALAELPPRRREAFVLHKFDGLSQVEVAERMGISLSMVEKHIASALLHCKRRLGQ-
A0A157WQC7/108-171          QQQRLSHLAAALAELPPRRREAFVLHKFDGLSQVEVAERMGISLSMVEKHIASALLHCKRRLGQ-
V6AIG9/108-171              QQQRLSHLAAALAELPPRRREAFVLHKFDGLSQVEVAERMGISLSMVEKHIASALLHCKRRLGQ-
A0A3S4RMN7/108-171          QQQRLSHLAAALAELPPRRREAFVLHKFDGLSQVEVAERMGISLSMVEKHIASALLHCKRRLGQ-
A0A0H2Z8G6/108-171          QQQRLSHLAAALAELPPRRREAFVLHKFDGLSQVEVAERMGISLSMVEKHIASALLHCKRRLGQ-
A0A1G5F863/108-171          QQQRLSHLAAALAELPPRRREAFVLHKFDGLSQVEVAERMGISLSMVEKHIASALLHCKRRLGQ-
#=GC scorecons              25999569559999996459569696969999656799665994969999966964997496562
#=GC scorecons_70           __***__*__******___*__***********_******_**_*******__**_***_**_*_
#=GC scorecons_80           __***__*__******___*__*_*_*_****____**___**_*_*****__*__**__*____
#=GC scorecons_90           __***__*__******___*__*_*_*_****____**___**_*_*****__*__**__*____
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