# STOCKHOLM 1.0
#=GF ID 1.10.10.10/FF/000611
#=GF DE Transcriptional repressor of nicotinamide riboside utilization NrtR
#=GF AC 1.10.10.10/FF/000611
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 64.477
#=GS 3gz6B02/163-240     AC Q8EFJ3
#=GS 3gz6B02/163-240     OS Shewanella oneidensis MR-1
#=GS 3gz6B02/163-240     DE Transcriptional repressor of nicotinamide riboside utilization NrtR
#=GS 3gz6B02/163-240     DR CATH; 3gz6; B:160-236; 
#=GS 3gz6B02/163-240     DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella; Shewanella oneidensis; 
#=GS 3gz6B02/163-240     DR GO; GO:0042802; 
#=GS 3gz6A02/163-240     AC Q8EFJ3
#=GS 3gz6A02/163-240     OS Shewanella oneidensis MR-1
#=GS 3gz6A02/163-240     DE Transcriptional repressor of nicotinamide riboside utilization NrtR
#=GS 3gz6A02/163-240     DR CATH; 3gz6; A:160-236; 
#=GS 3gz6A02/163-240     DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella; Shewanella oneidensis; 
#=GS 3gz6A02/163-240     DR GO; GO:0042802; 
#=GS 3gz5B02/163-240     AC Q8EFJ3
#=GS 3gz5B02/163-240     OS Shewanella oneidensis MR-1
#=GS 3gz5B02/163-240     DE Transcriptional repressor of nicotinamide riboside utilization NrtR
#=GS 3gz5B02/163-240     DR CATH; 3gz5; B:160-235; 
#=GS 3gz5B02/163-240     DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella; Shewanella oneidensis; 
#=GS 3gz5B02/163-240     DR GO; GO:0042802; 
#=GS 3gz5A02/163-240     AC Q8EFJ3
#=GS 3gz5A02/163-240     OS Shewanella oneidensis MR-1
#=GS 3gz5A02/163-240     DE Transcriptional repressor of nicotinamide riboside utilization NrtR
#=GS 3gz5A02/163-240     DR CATH; 3gz5; A:160-235; 
#=GS 3gz5A02/163-240     DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella; Shewanella oneidensis; 
#=GS 3gz5A02/163-240     DR GO; GO:0042802; 
#=GS Q8EFJ3/160-237      AC Q8EFJ3
#=GS Q8EFJ3/160-237      OS Shewanella oneidensis MR-1
#=GS Q8EFJ3/160-237      DE Transcriptional repressor of nicotinamide riboside utilization NrtR
#=GS Q8EFJ3/160-237      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella; Shewanella oneidensis; 
#=GS Q8EFJ3/160-237      DR GO; GO:0042802; 
#=GS Q89S55/241-316      AC Q89S55
#=GS Q89S55/241-316      OS Bradyrhizobium diazoefficiens USDA 110
#=GS Q89S55/241-316      DE Bll2550 protein
#=GS Q89S55/241-316      DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium; Bradyrhizobium diazoefficiens; 
#=GS A0A0D7EWG1/241-316  AC A0A0D7EWG1
#=GS A0A0D7EWG1/241-316  OS Rhodopseudomonas palustris
#=GS A0A0D7EWG1/241-316  DE NAD regulator
#=GS A0A0D7EWG1/241-316  DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas; Rhodopseudomonas palustris; 
#=GS A0A0Q6ZBV3/243-318  AC A0A0Q6ZBV3
#=GS A0A0Q6ZBV3/243-318  OS Afipia sp. Root123D2
#=GS A0A0Q6ZBV3/243-318  DE NAD regulator
#=GS A0A0Q6ZBV3/243-318  DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia; Afipia sp. Root123D2; 
#=GS F7QJP2/240-315      AC F7QJP2
#=GS F7QJP2/240-315      OS Bradyrhizobiaceae bacterium SG-6C
#=GS F7QJP2/240-315      DE Putative NAD regulator
#=GS F7QJP2/240-315      DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobiaceae bacterium SG-6C; 
#=GS B6JEW8/243-317      AC B6JEW8
#=GS B6JEW8/243-317      OS Oligotropha carboxidovorans OM5
#=GS B6JEW8/243-317      DE Uncharacterized protein
#=GS B6JEW8/243-317      DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha; Oligotropha carboxidovorans; 
#=GS W3RIP0/244-318      AC W3RIP0
#=GS W3RIP0/244-318      OS Afipia sp. P52-10
#=GS W3RIP0/244-318      DE NAD regulator
#=GS W3RIP0/244-318      DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia; Afipia sp. P52-10; 
#=GS A0A318TM04/241-316  AC A0A318TM04
#=GS A0A318TM04/241-316  OS Rhodopseudomonas faecalis
#=GS A0A318TM04/241-316  DE Uncharacterized protein
#=GS A0A318TM04/241-316  DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas; Rhodopseudomonas faecalis; 
#=GS A0A1H2B3N6/239-314  AC A0A1H2B3N6
#=GS A0A1H2B3N6/239-314  OS Bradyrhizobium canariense
#=GS A0A1H2B3N6/239-314  DE Uncharacterized conserved protein
#=GS A0A1H2B3N6/239-314  DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium; Bradyrhizobium canariense; 
#=GS A0A2M8ZXY8/239-314  AC A0A2M8ZXY8
#=GS A0A2M8ZXY8/239-314  OS Afipia broomeae
#=GS A0A2M8ZXY8/239-314  DE Uncharacterized protein
#=GS A0A2M8ZXY8/239-314  DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia; Afipia broomeae; 
#=GS A0A1H8NSN6/242-317  AC A0A1H8NSN6
#=GS A0A1H8NSN6/242-317  OS Rhodopseudomonas pseudopalustris
#=GS A0A1H8NSN6/242-317  DE Uncharacterized conserved protein
#=GS A0A1H8NSN6/242-317  DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas; Rhodopseudomonas pseudopalustris; 
#=GS A0A1M5JRS4/241-314  AC A0A1M5JRS4
#=GS A0A1M5JRS4/241-314  OS Bradyrhizobium erythrophlei
#=GS A0A1M5JRS4/241-314  DE Uncharacterized conserved protein
#=GS A0A1M5JRS4/241-314  DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium; Bradyrhizobium erythrophlei; 
#=GS A0A1Q3W147/253-326  AC A0A1Q3W147
#=GS A0A1Q3W147/253-326  OS Afipia sp. 64-13
#=GS A0A1Q3W147/253-326  DE NAD regulator
#=GS A0A1Q3W147/253-326  DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia; Afipia sp. 64-13; 
#=GS A0A1M6ZXT5/240-313  AC A0A1M6ZXT5
#=GS A0A1M6ZXT5/240-313  OS Bradyrhizobium lablabi
#=GS A0A1M6ZXT5/240-313  DE Uncharacterized conserved protein
#=GS A0A1M6ZXT5/240-313  DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium; Bradyrhizobium lablabi; 
#=GS A0A0E4BT74/241-316  AC A0A0E4BT74
#=GS A0A0E4BT74/241-316  OS Bradyrhizobium diazoefficiens
#=GS A0A0E4BT74/241-316  DE Uncharacterized protein
#=GS A0A0E4BT74/241-316  DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium; Bradyrhizobium diazoefficiens; 
#=GS Q6NAW7/247-322      AC Q6NAW7
#=GS Q6NAW7/247-322      OS Rhodopseudomonas palustris CGA009
#=GS Q6NAW7/247-322      DE Uncharacterized protein
#=GS Q6NAW7/247-322      DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas; Rhodopseudomonas palustris; 
#=GS Q20YC8/241-316      AC Q20YC8
#=GS Q20YC8/241-316      OS Rhodopseudomonas palustris BisB18
#=GS Q20YC8/241-316      DE Uncharacterized protein
#=GS Q20YC8/241-316      DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas; Rhodopseudomonas palustris; 
#=GS Q13BR8/242-317      AC Q13BR8
#=GS Q13BR8/242-317      OS Rhodopseudomonas palustris BisB5
#=GS Q13BR8/242-317      DE Uncharacterized protein
#=GS Q13BR8/242-317      DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas; Rhodopseudomonas palustris; 
#=GS Q07IB5/241-316      AC Q07IB5
#=GS Q07IB5/241-316      OS Rhodopseudomonas palustris BisA53
#=GS Q07IB5/241-316      DE Uncharacterized protein
#=GS Q07IB5/241-316      DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas; Rhodopseudomonas palustris; 
#=GS K8PF70/243-318      AC K8PF70
#=GS K8PF70/243-318      OS Afipia broomeae ATCC 49717
#=GS K8PF70/243-318      DE Uncharacterized protein
#=GS K8PF70/243-318      DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia; Afipia broomeae; 
#=GF SQ 24
3gz6B02/163-240             SLVPGF--ALSEPFTLPELQHVHEVLLGKPIQGKSFRRRVEQADLLIDTGLKRTER-GRPANLYCLKPDTASYRFLRNLEC
3gz6A02/163-240             SLVPGF--ALSEPFTLPELQHVHEVLLGKPIQGKSFRRRVEQADLLIDTGLKRTER-GRPANLYCLKPDTASYRFLRNLEC
3gz5B02/163-240             SLVPGF--ALSEPFTLPELQHVHEVLLGKPIQGKSFRRRVEQADLLIDTGLKRTER-GRPANLYCLKPDTASYRFLRNLEC
3gz5A02/163-240             SLVPGF--ALSEPFTLPELQHVHEVLLGKPIQGKSFRRRVEQADLLIDTGLKRTER-GRPANLYCLKPDTASYRFLRNLEC
Q8EFJ3/160-237              SLVPGF--ALSEPFTLPELQHVHEVLLGKPIQGKSFRRRVEQADLLIDTGLKRTER-GRPANLYCLKPDTASYRFLRNLEC
Q89S55/241-316              KYRPVVFELLPAEFTLTELQHTVEAISGRHLHKQNFRRLVETEALVEPTGVMSTQTGGRPAALYRFRRDVLQER-----PA
A0A0D7EWG1/241-316          KYRPVVFELLPPEFTLTDLQHTVEAISGRHLHKQNFRRLVEAGALVEPTGEMSTQTGGRPAALFRFRREVLQER-----PA
A0A0Q6ZBV3/243-318          KYRPVVFELLPPEFTLTDLQRTVEAISGRHLHKQNFRRLVEAGALVEPTGDMSTQTGGRPAALFRFRREVLQER-----PA
F7QJP2/240-315              KYRPVVFELLPPEFTLTELQRTVEAISGRHLHKQNFRRLVEAGALVEPTGEMSTRTGGRPAALFRFRREVLQER-----PA
B6JEW8/243-317              -YRPVVFELLPPEFTLTELQHTVEAISGRHLHKQNFRRLVEAGALTEPTGEVSTRTGGRPAALFRFRREVLQER-----PA
W3RIP0/244-318              KYRPVVFELLPGEFTLTDLQRTVEAISGRHLHKQNFRRLVEAGALVEPTGEMSTQTGGRPAALFRFRRSVLQER-----P-
A0A318TM04/241-316          KYRPVVFELLPPDFTLTELQRTVEAISGRHLHKQNFRRLVEAGALVEPTGEVATHTGGRPAALFRFRREVLQER-----PA
A0A1H2B3N6/239-314          KYRPVVFELLPPEFTLTELQRTVEAISGRHLHKQNFRRLVENGALVEPTGVMSTQTGGRPAALFRFRREVLQER-----PA
A0A2M8ZXY8/239-314          KYRPVVFELLPPEFTLTELQRTVEAISGRHLHKQNFRRLVENGALVEPTGVMSTQTGGRPAALFRFRREVLQER-----PA
A0A1H8NSN6/242-317          KYRPVVFELLPPEFTLTELQHTVEAISGRHLHKQNFRRLVEAGALVEPTGEMSTRTGGRPAALFRFRREVLQER-----PA
A0A1M5JRS4/241-314          --RPVVFELLSPEFTLTELQRTVEAISGRHLHKQNFRRLVEAGALVEPTGVLSTQTGGRPAALFRFRREVLQER-----PA
A0A1Q3W147/253-326          --RPVVFEMLPPEFTLTDLQRTVEAISGRHLHKQNFRRLVEAEALVEPTGEVSTQTGGRPAALFRFRREVLQER-----PA
A0A1M6ZXT5/240-313          --RPVVFELLPGEFTLTELQRTVEAISGRHLHKQNFRRLVEAGALVEPIGVMSTQTGGRPAALFRFRREVLQER-----PA
A0A0E4BT74/241-316          KYRPVVFELLPAEFTLTELQHTVEAISGRHLHKQNFRRLVETEALVEPTGVMSTQTGGRPAALYRFRRDVLQER-----PA
Q6NAW7/247-322              KYRPVVFELLPPEFTLTELQHTVEAISGRHLHKQNFRRLVEAGALVEPTGEMSTRTGGRPAALFRFRREVLQER-----PA
Q20YC8/241-316              KYRPVVFELLPPEFTLTELQRTVEAISGRHLHKQNFRRLVEAGALVEPTGEMSTHTGGRPAALFRFRREVLQER-----PA
Q13BR8/242-317              KYRPVVFELLPPEFTLTELQHTVEAISGRHLHKQNFRRLVEAGALVEPTGEMSTRTGGRPAALFRFRREVLQER-----PA
Q07IB5/241-316              KYRPVVFELLPPEFTLTELQHTVEAISGRHLHKQNFRRLVEAGALVEPTGEMATHTGGRPAALFRFRREVLQER-----PA
K8PF70/243-318              KYRPVVFELLPSEFTLTDLQRTVEAISGRHLHKQNFRRLVEAGALVEPTGEMSTQTGGRPAALFRFRREVLQER-----PA
#=GC scorecons              444955225964599968996549665975665669994994559645894459552999959756756555491111155
#=GC scorecons_70           ___*_____*___***_****__*_*_**_**_*_***_**___*___**___*___****_**_**_*____*_______
#=GC scorecons_80           ___*_____*___***_***___*___*_______***_**___*___**___*___****_**_________*_______
#=GC scorecons_90           ___*_____*___***__**___*___*_______***_**___*___**___*___****_*__________*_______
//