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CATH Superfamily 4.10.60.10

Zinc finger, CCHC-type

The name of this superfamily has been modified since the most recent official CATH+ release (v4_4_0). At the point of the last release, this superfamily was named:

"
Zinc finger, CCHC-type
".

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.

Browse Functional Families

ID Function Family (FunFam) Name Total Sequences Enzyme? Structure? Structural Representative PDB Sites? Alignment Diversity (0-100)
1
Gag polyprotein
1036
3D
 1eskA00 - 89.6
2
cellular nucleic acid-binding protein-like isoform X1
546 - - 85.4
3
serine/arginine-rich splicing factor RS2Z32-like isoform X1
231 - - 73.9
4
cellular nucleic acid-binding protein isoform X2
230 - - 56.8
5
E3 ubiquitin-protein ligase RBBP6
222
3D
 2ysaA00 - 80.3
7
Protein lin-28 homolog A
220
3D
 3ts2B02 - 79.1
6
cellular nucleic acid-binding protein-like isoform X1
212 - - 67.6
8
Cleavage and polyadenylation specificity factor subunit 4
190 - - 53.0
9
Zinc finger CCHC-type and RNA-binding motif-containing protein 1
149 - - 82.0
10
Zinc knuckle domain containing protein
138 - - 43.7
11
splicing factor 1
122 - - 82.3
12
Cellular nucleic acid-binding protein
102 - - 68.2
13
Zinc finger CCHC domain-containing protein 9
101 - - 67.3
14
RNA-binding motif protein 4
83 - - 31.0
15
RNA-binding protein 4B isoform X1
82 - - 29.9
16
Cellular nucleic acid-binding protein
76 - - 82.4
18
Splicing factor, arginine/serine-rich 7
67 - - 53.3
17
zinc finger CCHC domain-containing protein 9
67 - - 67.5
19
Zinc finger CCHC domain-containing protein 2
66 - - 36.6
20
Zinc finger CCHC domain-containing protein 7
59 - - 76.5
21
zinc finger CCHC domain-containing protein 3
58 - - 22.6
22
Serine/arginine-rich splicing factor RS2Z32
57 - - 61.1
24
terminal uridylyltransferase 7 isoform X1
55 - - 14.5
23
Cellular nucleic acid-binding protein homolog
55 - - 72.0
25
U11/U12 small nuclear ribonucleoprotein 31 kDa protein-like
47 - - 45.0
26
cellular nucleic acid-binding protein-like isoform X1
45 - - 87.9
28
Gag polyprotein
41
3D
 1wwgA00 - 21.9
27
serine/arginine-rich splicing factor 7 isoform X1
39 - - 48.0
31
splicing factor 1
30 - - 81.8
30
Branchpoint-bridging protein
30 - - 78.4
29
Serine/arginine-rich splicing factor RSZ22A
30 - - 63.7
32
Glycine-rich RNA-binding protein 7
26 - - 78.2
33
Glycine-rich RNA-binding protein RZ1C
24 - - 56.6
34
Universal minicircle sequence binding protein
UMSBP
23 - - 87.5
35
Cellular nucleic acid-binding protein
22 - - 74.1
36
Gag polyprotein
22 - - 80.7
37
DEAD-box ATP-dependent RNA helicase 3, chloroplastic
21 - - 65.8
38
CCHC-type zinc finger, nucleic acid-binding protein a
21 - - 83.0
39
Universal minicircle sequence binding protein, putative
20 - - 36.6
40
Uncharacterized protein
20 - - 8.3
43
Air1p
18
3D
 3nybB00 - 37.1
41
Zinc finger CCHC domain-containing protein 7
18 - - 36.7
42
Transcription or splicing factor-like protein
17 - - 8.0
44
Putative universal minicircle sequence binding protein
16 - - 53.3
48
CCHC-type zinc finger protein CG3800
15 - - 69.8
46
Zinc finger protein GIS2
15 - - 73.5
45
CCHC-type zinc finger protein-like
15 - - 47.5
47
Glycine-rich RNA-binding protein RZ1C
15 - - 34.5
50
Unplaced genomic scaffold supercont2.10, whole genome shotgun sequence
14 - - 67.0
49
Zinc finger protein GIS2
14 - - 74.6
51
Zinc finger protein containing protein
14 - - 9.9
52
Putative universal minicircle sequence binding protein
14 - - 67.6
53
RNA recognition motif domain containing protein
14 - - 80.5
54
AGAP008075-PA-like protein
13 - - 60.3
55
RNA-binding protein lark
13 - - 22.9
57
Uncharacterized protein, isoform A
12 - - 9.9
56
Splicing factor, arginine/serine-rich 7
12 - - 16.9
61
X16 splicing factor, isoform B
11 - - 44.0
64
Unplaced genomic scaffold supercont1.38, whole genome shotgun sequence
11 - - 13.3
62
zinc finger CCHC-type and RNA-binding motif-containing protein 1 isoform X2
11 - - 7.0
65
A/G-specific adenine DNA glycosylase
11 - - 17.0
66
CCHC-type zinc finger, nucleic acid-binding protein a
11 - - 52.4
63
Unplaced genomic scaffold supercont1.17, whole genome shotgun sequence
11 - - 0.0
59
Gis2p
11 - - 3.1
60
Zinc knuckle domain protein
11 - - 61.5
58
Cellular nucleic acid-binding protein homolog
11 - - 17.7
67
Air2p
10 - - 55.5
72
Putative universal minicircle sequence binding protein
10 - - 13.3
75
CCHC-type zinc finger protein CG3800
10 - - 69.6
71
Cleavage and polyadenylation-specific factor 4-like
10 - - 70.6
74
Cleavage polyadenylation factor subunit
10 - - 11.9
68
cellular nucleic acid-binding protein isoform X5
10 - - 12.7
73
Msl5p
10 - - 6.3
70
Splicing factor, arginine/serine-rich 7
10 - - 31.2
69
Glycine-rich RNA-binding protein RZ1A
10 - - 24.5
81
Protein lin-28
9 - - 8.1
76
Zinc knuckle domain protein
Byr3 AFU_orthologue AFUA_1G07630
9 - - 80.5
77
Zinc knuckle nucleic acid binding protein, putative
9 - - 10.0
82
RNA recognition motif domain containing protein
9 - - 53.9
83
Protein CBG13587
9 - - 61.9
78
Unplaced genomic scaffold supercont2.10, whole genome shotgun sequence
9 - - 6.0
80
RNA helicase, putative
9 - - 48.4
90
Gag polyprotein
9
3D
 2ihxA00 - 10.1
79
Nucleic acid binding protein
9 - - 74.8
84
Zinc knuckle domain protein
Byr3
8 - - 52.3
91
Zinc finger CCHC-type-containing 9
8 - - 90.6
87
Protein CBG24470
8 - - 75.9
86
ATP-dependent DNA helicase Q4
8 - - 72.3
92
Universal minicircle sequence binding protein
8 - - 65.1
85
Zinc knuckle nucleic acid binding protein, putative
8 - - 36.4
93
cellular nucleic acid-binding protein-like isoform X2
8 - - 41.1
88
Cleavage and polyadenylation specificity factor subunit 4-like Protein
8 - - 44.4
89
RNA-binding protein lark
8 - - 3.6
97
Universal minicircle sequence binding protein
7 - - 26.6
94
Zinc finger CCHC-type containing 13
7 - - 71.0
102
Cellular nucleic acid binding protein, putative
7 - - 77.2
95
Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence
7 - - 59.7
96
Zinc finger CCHC-type containing 7
7 - - 19.4
104
Peptidyl-prolyl cis-trans isomerase
7 - - 0.0
98
Cellular nucleic acid-binding protein
7 - - 7.3
103
RNA binding motif protein 4.1
7 - - 38.6
106
Zinc finger protein containing protein
7 - - 4.8
101
Serine/arginine-rich splicing factor RSZ21A isoform C
7 - - 33.1
105
Os05g0120100 protein
7 - - 15.9
100
Arginine/serine-rich splicing factor RSZ23 transcript III
7 - - 24.4
99
Cellular nucleic acid-binding protein
7 - - 10.0
113
Cleavage and Polyadenylation Specificity Factor
6 - - 12.0
111
AAEL017419-PA
6 - - 52.8
116
Zinc knuckle
CCHC-type
6 - - 53.7
117
CCHC-type zinc finger protein CG3800
6 - - 70.2
109
Universal minicircle sequence binding protein
UMSBP
6 - - 73.1
115
Putative cleavage and polyadenylation specificity factor 30 kDa subunit
6 - - 0.0
110
Glycine-rich RNA-binding protein RZ1B isoform C
6 - - 28.2
118
DNA-binding protein
6 - - 73.6
112
Ribosomal protein L15
6 - - 90.0
114
Zinc knuckle domain containing protein
6 - - 3.8
107
Putative Zinc knuckle domain protein
6 - - 12.4
119
Gag polyprotein
6 - - 54.3
108
Similar to zinc knuckle domain-containing protein
6 - - 0.0
121
HCL585Cp
5 - - 43.7
126
Serine and arginine-rich-splicing factor 7a
5 - - 68.4
123
Cellular nucleic acid binding protein 2
5 - - 53.2
130
Cellular nucleic acid binding protein, putative
5 - - 0.0
128
DEAD-box ATP-dependent RNA helicase 3, chloroplastic isoform A
5 - - 34.7
120
Zinc knuckle
CCHC-type
5 - - 8.1
125
Putative e3 ubiquitin ligase
5 - - 51.7
131
ATP-dependent DNA helicase PIF1
5 - - 89.5
127
Glycine-rich RNA-binding protein RZ1B
5 - - 0.0
122
Uncharacterized protein
5 - - 35.7
129
Phragmoplastin interacting protein 1
5 - - 5.6
124
Protein CBG13587
5 - - 61.4
137
Zinc knuckle domain containing protein
4 - - 2.9
135
Putative poly-zinc finger protein 2
4 - - 9.4
143
Replication protein A subunit
4 - - 0.0
138
Putative germ-line specific RNA helicase vasa protein
4 - - 39.2
141
Uncharacterized protein
4 - - 54.0
146
Nucleic acid binding protein, putative
4 - - 0.0
147
Rts protein
4 - - 0.0
133
AFR646Wp
4 - - 50.6
145
Uncharacterized protein
4 - - 10.1
140
Uncharacterized protein
4 - - 81.9
148
Replication protein A subunit
4 - - 43.4
136
Glycine-rich RNA-binding protein 10
4 - - 29.5
139
Cold shock domain-containing protein 4
4 - - 46.9
134
Cellular nucleic acid-binding protein
4 - - 6.0
142
DEAD-Box Protein
4 - - 0.0
144
ATP-dependent RNA helicase glh-2
4 - - 53.3
132
Uncharacterized protein
4 - - 21.9
151
RecQ helicase-like 4
3 - - 45.3
156
Replication protein A subunit
3 - - 0.0
161
Terminal uridylyltransferase 7
3 - - 12.8
153
Cold shock domain-containing protein 3
3 - - 29.6
163
Vasa
3 - - 78.9
160
Replication protein A subunit
3 - - 0.0
158
RNA binding motif protein 4 [
3 - - 7.7
150
Putative e3 ubiquitin ligase
3 - - 10.4
155
tRNA-splicing endonuclease, putative
3 - - 0.0
157
Cleavage and polyadenylation specificity factor 30 kDa subunit
3 - - 0.0
162
Uncharacterized protein
3 - - 50.7
152
Cold shock domain-containing protein 3
3 - - 58.4
149
DNA-binding protein
3 - - 0.0
164
Zinc knuckle nucleic acid binding protein, putative
AFU_orthologue AFUA_7G02190
3 - - 33.1
159
Terminal uridylyl transferase 4
3 - - 8.1
154
Replication protein A subunit
3 - - 0.0
204
Uncharacterized protein
2 - - 0.0
173
Zinc finger CCHC-type containing 7
2 - - 0.0
209
Uncharacterized protein
2 - - 45.7
180
Predicted protein
2 - - 42.7
188
Cold shock domain protein 1
2 - - 2.6
166
TIMELESS-interacting protein
2 - - 0.0
185
Glycine-rich RNA-binding protein RZ1A
2 - - 12.2
176
Uncharacterized protein
2 - - 41.7
171
WGS project CABT00000000 data, contig 2.31
2 - - 0.0
187
Cold shock protein 2
2 - - 0.0
199
Uncharacterized protein
2 - - 0.0
194
AGAP008075-PA
2 - - 0.0
175
mRNA-binding translational activator
2 - - 0.0
186
ATP-dependent RNA helicase glh-4
2 - - 35.6
168
Uncharacterized protein
2 - - 8.6
181
Predicted protein
2 - - 41.8
177
Uncharacterized protein
2 - - 2.9
192
Protein CBG28058
2 - - 0.0
167
WGS project CABT00000000 data, contig 2.31
2 - - 7.8
202
Uncharacterized protein
2 - - 5.1
183
Serine/arginine-rich splicing factor RSZ21
2 - - 0.0
165
Uncharacterized protein
2 - - 22.1
170
Zinc knuckle domain protein
Byr3
2 - - 0.0
178
Uncharacterized protein
2 - - 34.6
207
Branchpoint-bridging protein
2 - - 0.0
205
Nucleic acid binding protein, putative
2 - - 8.9
198
Cold shock domain-containing protein 4
2 - - 0.0
190
Uncharacterized protein
2 - - 0.0
200
Branchpoint-bridging protein
2 - - 4.4
195
Uncharacterized protein
2 - - 0.0
208
Uncharacterized protein
2 - - 15.1
172
Zf-CCHC type zinc finger protein
2 - - 0.0
184
SON DNA-binding protein, putative
2 - - 0.0
189
Peptidyl-prolyl cis-trans isomerase
2 - - 4.6
197
Uncharacterized protein
2 - - 8.9
196
Cold shock domain protein 1
2 - - 4.3
191
Replication protein A subunit
2 - - 0.0
182
Ribosomal L28e protein family
2 - - 5.0
174
mRNA-binding translational activator
2 - - 0.0
179
Predicted protein
2 - - 46.1
203
Uncharacterized protein
2 - - 4.5
193
RNA binding motif protein 4.2
2 - - 0.0
169
YALI0D12056p
2 - - 0.0
206
Uncharacterized protein
2 - - 4.8
201
DNA topoisomerase
2 - - 0.0
260
Universal minicircle sequence binding protein
UMSBP
1 - - 0.0
217
Uncharacterized protein
1 - - 0.0
247
ATP-dependent RNA helicase glh-3
1 - - 0.0
268
Uncharacterized protein
1 - - 0.0
245
Uncharacterized protein
1 - - 0.0
228
Uncharacterized protein
1 - - 0.0
215
Uncharacterized protein
1 - - 0.0
233
Uncharacterized protein
1 - - 0.0
258
Uncharacterized protein
1 - - 0.0
220
Uncharacterized protein
1 - - 0.0
250
DNA topoisomerase
1 - - 0.0
210
Uncharacterized protein
1 - - 0.0
267
Uncharacterized protein
1 - - 0.0
240
Uncharacterized protein
1 - - 0.0
218
Uncharacterized protein
1 - - 0.0
255
Uncharacterized protein
1 - - 0.0
225
Zinc finger CCHC-type containing 13
1 - - 0.0
248
Uncharacterized protein
1 - - 0.0
236
Uncharacterized protein
1 - - 0.0
231
Uncharacterized protein
1 - - 0.0
265
Predicted protein
1 - - 0.0
270
Uncharacterized protein
1 - - 0.0
227
Uncharacterized protein
1 - - 0.0
257
DNA topoisomerase
1 - - 0.0
251
DNA topoisomerase
1 - - 0.0
256
Uncharacterized protein
1 - - 0.0
221
Uncharacterized protein
1 - - 0.0
226
Uncharacterized protein
1 - - 0.0
273
Replication protein A subunit
1 - - 0.0
237
Uncharacterized protein
1 - - 0.0
243
Uncharacterized protein
1 - - 0.0
261
Uncharacterized protein
1 - - 0.0
235
Uncharacterized protein
1 - - 0.0
213
Predicted protein
1 - - 0.0
266
Uncharacterized protein
1 - - 0.0
238
Uncharacterized protein
1 - - 0.0
253
Uncharacterized protein
1 - - 0.0
223
Uncharacterized protein
1 - - 0.0
230
Uncharacterized protein
1 - - 0.0
271
mRNA 3'-end-processing protein YTH1
1 - - 0.0
241
Uncharacterized protein
1 - - 0.0
246
Alternative splicing factor SRp20/9G8, putative
1 - - 0.0
211
Uncharacterized protein
1 - - 0.0
263
Uncharacterized protein
1 - - 0.0
216
Uncharacterized protein
1 - - 0.0
244
RNA-binding region RNP-1 domain-containing protein
1 - - 0.0
214
Uncharacterized protein
1 - - 0.0
219
Uncharacterized protein
1 - - 0.0
249
Rothmund-thomson syndrome DNA helicase recq4, putative
1 - - 0.0
274
Uncharacterized protein
1 - - 0.0
264
Uncharacterized protein
1 - - 0.0
269
Uncharacterized protein
1 - - 0.0
232
CCHC-type zinc finger nucleic acid-binding protein
1 - - 0.0
229
Uncharacterized protein
1 - - 0.0
259
Uncharacterized protein
1 - - 0.0
254
Uncharacterized protein
1 - - 0.0
224
Uncharacterized protein
1 - - 0.0
262
Peptidyl-prolyl cis-trans isomerase
1 - - 0.0
239
Uncharacterized protein
1 - - 0.0
234
Uncharacterized protein
1 - - 0.0
222
Uncharacterized protein
1 - - 0.0
252
DNA topoisomerase
1 - - 0.0
212
Nucleic acid binding protein
1 - - 0.0
242
Uncharacterized protein
1 - - 0.0
272
Putative germ-line specific RNA helicase vasa protein
1 - - 0.0
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