CATH Classification

Domain Context

CATH Clusters

Superfamily 1.10.3550.20
Functional Family

Enzyme Information

6.5.1.3
RNA ligase (ATP).
based on mapping to UniProt P00971
ATP + (ribonucleotide)(n)-3'-hydroxyl + 5'-phospho-(ribonucleotide)(m) = (ribonucleotide)(n+m) + AMP + diphosphate.
-!- The enzyme catalyzes the ligation of RNA strands with 3'-hydroxyl and 5'-phosphate termini, forming a phosphodiester and sealing certain types of single-strand breaks in RNA. -!- Catalysis occurs by a three-step mechanism, starting with the activation of the enzyme by ATP, forming a phosphoramide bond between adenylate and a lysine residue. -!- The adenylate group is then transferred to the 5'-phosphate terminus of the substrate, forming the capped structure 5'-(5'-diphosphoadenosine)-(RNA). -!- Finally, the enzyme catalyzes a nucleophilic attack of the 3'-OH terminus on the capped terminus, which results in formation of the phosphodiester bond and release of the adenylate.

UniProtKB Entries (1)

P00971
RLIG_BPT4
Escherichia virus T4
T4 RNA ligase 1

PDB Structure

PDB 2C5U
External Links
Method X-RAY DIFFRACTION
Organism
Primary Citation
Molecular Architecture and Ligand Recognition Determinants for T4 RNA Ligase
El Omari, K., Ren, J., Bird, L.E., Bona, M.K., Klarmann, G., Legrice, S.F.J., Stammers, D.K.
J.Biol.Chem.