PDB 5ymt

PDB Links
Overview

PDB Information

PDB	5YMT
Method	X-RAY DIFFRACTION
Host Organism	Escherichia coli-Pichia pastoris shuttle vector pPpARG4
Gene Source	Human rotavirus A
Primary Citation	Glycan Binding Specificity and Mechanism of Human and Porcine P[6]/P[19] Rotavirus VP8*s. Sun, X., Li, D., Qi, J., Chai, W., Wang, L., Wang, L., Peng, R., Wang, H., Zhang, Q., Pang, L., Kong, X., Wang, H., Jin, M., Gao, G.F., Duan, Z. J. Virol.
Header	Viral Protein
Released	2017-10-22
Resolution	2.200
CATH Insert Date	03 Jun, 2018

PDB Images (29)

5ymt

PDB 5ymt

5ymtA

PDB Chain 5ymtA

5ymtB

PDB Chain 5ymtB

5ymtC

PDB Chain 5ymtC

5ymtD

PDB Chain 5ymtD

5ymtE

PDB Chain 5ymtE

5ymtF

PDB Chain 5ymtF

5ymtG

PDB Chain 5ymtG

5ymtH

PDB Chain 5ymtH

5ymtI

PDB Chain 5ymtI

5ymtJ

PDB Chain 5ymtJ

5ymtK

PDB Chain 5ymtK

5ymtL

PDB Chain 5ymtL

5ymtM

PDB Chain 5ymtM

5ymtN

PDB Chain 5ymtN

5ymtA01

CATH Domain 5ymtA01

5ymtB01

CATH Domain 5ymtB01

5ymtC01

CATH Domain 5ymtC01

5ymtD01

CATH Domain 5ymtD01

5ymtE01

CATH Domain 5ymtE01

5ymtF01

CATH Domain 5ymtF01

5ymtG01

CATH Domain 5ymtG01

5ymtH01

CATH Domain 5ymtH01

5ymtI01

CATH Domain 5ymtI01

5ymtJ01

CATH Domain 5ymtJ01

5ymtK01

CATH Domain 5ymtK01

5ymtL01

CATH Domain 5ymtL01

5ymtM01

CATH Domain 5ymtM01

5ymtN01

CATH Domain 5ymtN01

PDB Prints

PDB Chains (14)

Chain ID	Date inserted into CATH	CATH Status
A	03 Jun, 2018	Chopped
B	03 Jun, 2018	Chopped
C	03 Jun, 2018	Chopped
D	03 Jun, 2018	Chopped
E	03 Jun, 2018	Chopped
F	03 Jun, 2018	Chopped
G	03 Jun, 2018	Chopped
H	03 Jun, 2018	Chopped
I	03 Jun, 2018	Chopped
J	03 Jun, 2018	Chopped
K	03 Jun, 2018	Chopped
L	03 Jun, 2018	Chopped
M	03 Jun, 2018	Chopped
N	03 Jun, 2018	Chopped

CATH Domains (14)

Domain ID	Date inserted into CATH	Superfamily	CATH Status
5ymtA01	28 Jun, 2018	2.60.120.200	Assigned
5ymtB01	28 Jun, 2018	2.60.120.200	Assigned
5ymtC01	28 Jun, 2018	2.60.120.200	Assigned
5ymtD01	28 Jun, 2018	2.60.120.200	Assigned
5ymtE01	28 Jun, 2018	2.60.120.200	Assigned
5ymtF01	28 Jun, 2018	2.60.120.200	Assigned
5ymtG01	28 Jun, 2018	2.60.120.200	Assigned
5ymtH01	28 Jun, 2018	2.60.120.200	Assigned
5ymtI01	28 Jun, 2018	2.60.120.200	Assigned
5ymtJ01	28 Jun, 2018	2.60.120.200	Assigned
5ymtK01	28 Jun, 2018	2.60.120.200	Assigned
5ymtL01	28 Jun, 2018	2.60.120.200	Assigned
5ymtM01	28 Jun, 2018	2.60.120.200	Assigned
5ymtN01	28 Jun, 2018	2.60.120.200	Assigned

UniProtKB Entries (14)

Accession	Gene ID	Taxon	Description
Q9Q2P6	Q9Q2P6_9REOV	Human rotavirus A	Outer capsid protein VP4
Q9Q2P6	Q9Q2P6_9REOV	Human rotavirus A	Outer capsid protein VP4
Q9Q2P6	Q9Q2P6_9REOV	Human rotavirus A	Outer capsid protein VP4
Q9Q2P6	Q9Q2P6_9REOV	Human rotavirus A	Outer capsid protein VP4
Q9Q2P6	Q9Q2P6_9REOV	Human rotavirus A	Outer capsid protein VP4
Q9Q2P6	Q9Q2P6_9REOV	Human rotavirus A	Outer capsid protein VP4
Q9Q2P6	Q9Q2P6_9REOV	Human rotavirus A	Outer capsid protein VP4
Q9Q2P6	Q9Q2P6_9REOV	Human rotavirus A	Outer capsid protein VP4
Q9Q2P6	Q9Q2P6_9REOV	Human rotavirus A	Outer capsid protein VP4
Q9Q2P6	Q9Q2P6_9REOV	Human rotavirus A	Outer capsid protein VP4
Q9Q2P6	Q9Q2P6_9REOV	Human rotavirus A	Outer capsid protein VP4
Q9Q2P6	Q9Q2P6_9REOV	Human rotavirus A	Outer capsid protein VP4
Q9Q2P6	Q9Q2P6_9REOV	Human rotavirus A	Outer capsid protein VP4
Q9Q2P6	Q9Q2P6_9REOV	Human rotavirus A	Outer capsid protein VP4