PDB 5ydk

PDB Links
Overview

PDB Information

PDB	5YDK
Method	X-RAY DIFFRACTION
Host Organism	Escherichia coli
Gene Source	Homo sapiens
Primary Citation	Structural insights into two distinct binding modules for Lys63-linked polyubiquitin chains in RNF168 Takahashi, T.S., Hirade, Y., Toma, A., Sato, Y., Yamagata, A., Goto-Ito, S., Tomita, A., Nakada, S., Fukai, S. Nat Commun
Header	Signaling Protein
Released	2017-09-13
Resolution	2.510
CATH Insert Date	03 Jun, 2018

PDB Images (21)

5ydk

PDB 5ydk

5ydkA

PDB Chain 5ydkA

5ydkB

PDB Chain 5ydkB

5ydkC

PDB Chain 5ydkC

5ydkD

PDB Chain 5ydkD

5ydkE

PDB Chain 5ydkE

5ydkF

PDB Chain 5ydkF

5ydkG

PDB Chain 5ydkG

5ydkH

PDB Chain 5ydkH

5ydkI

PDB Chain 5ydkI

5ydkJ

PDB Chain 5ydkJ

5ydkK

PDB Chain 5ydkK

5ydkL

PDB Chain 5ydkL

5ydkB00

CATH Domain 5ydkB00

5ydkC00

CATH Domain 5ydkC00

5ydkD00

CATH Domain 5ydkD00

5ydkE00

CATH Domain 5ydkE00

5ydkH00

CATH Domain 5ydkH00

5ydkI00

CATH Domain 5ydkI00

5ydkJ00

CATH Domain 5ydkJ00

5ydkK00

CATH Domain 5ydkK00

PDB Prints

PDB Chains (12)

Chain ID	Date inserted into CATH	CATH Status
A	03 Jun, 2018	Holding pen
B	03 Jun, 2018	Chopped
C	03 Jun, 2018	Chopped
D	03 Jun, 2018	Chopped
E	03 Jun, 2018	Chopped
F	03 Jun, 2018	Holding pen
G	03 Jun, 2018	Holding pen
H	03 Jun, 2018	Chopped
I	03 Jun, 2018	Chopped
J	03 Jun, 2018	Chopped
K	03 Jun, 2018	Chopped
L	03 Jun, 2018	Holding pen

CATH Domains (8)

Domain ID	Date inserted into CATH	CATH Status
5ydkB00	28 Jun, 2018	Holding pen
5ydkC00	28 Jun, 2018	Holding pen
5ydkD00	28 Jun, 2018	Holding pen
5ydkE00	28 Jun, 2018	Holding pen
5ydkH00	28 Jun, 2018	Holding pen
5ydkI00	28 Jun, 2018	Holding pen
5ydkJ00	28 Jun, 2018	Holding pen
5ydkK00	28 Jun, 2018	Holding pen

UniProtKB Entries (12)

Accession	Gene ID	Taxon	Description
P62979	RS27A_HUMAN	Homo sapiens	Ubiquitin-40S ribosomal protein S27a
Q8IYW5	RN168_HUMAN	Homo sapiens	E3 ubiquitin-protein ligase RNF168
P62979	RS27A_HUMAN	Homo sapiens	Ubiquitin-40S ribosomal protein S27a
P62979	RS27A_HUMAN	Homo sapiens	Ubiquitin-40S ribosomal protein S27a
Q8IYW5	RN168_HUMAN	Homo sapiens	E3 ubiquitin-protein ligase RNF168
P62979	RS27A_HUMAN	Homo sapiens	Ubiquitin-40S ribosomal protein S27a
P62979	RS27A_HUMAN	Homo sapiens	Ubiquitin-40S ribosomal protein S27a
P62979	RS27A_HUMAN	Homo sapiens	Ubiquitin-40S ribosomal protein S27a
Q8IYW5	RN168_HUMAN	Homo sapiens	E3 ubiquitin-protein ligase RNF168
P62979	RS27A_HUMAN	Homo sapiens	Ubiquitin-40S ribosomal protein S27a
P62979	RS27A_HUMAN	Homo sapiens	Ubiquitin-40S ribosomal protein S27a
Q8IYW5	RN168_HUMAN	Homo sapiens	E3 ubiquitin-protein ligase RNF168