PDB 5xon

PDB Information

PDB5XON
MethodELECTRON MICROSCOPY
Host OrganismEscherichia coli
Gene SourceKomagataella phaffii (strain GS115 / ATCC 20864)
Primary Citation
Structure of the complete elongation complex of RNA polymerase II with basal factors
Ehara, H., Yokoyama, T., Shigematsu, H., Yokoyama, S., Shirouzu, M., Sekine, S.I.
Science
HeaderTranscription/Rna
Released2017-05-29
Resolution3.830
CATH Insert Date14 Nov, 2017

PDB Images (37)

PDB Prints

PDB Chains (18)

Chain ID Date inserted into CATH CATH Status
A 14 Nov, 2017 Holding pen
B 14 Nov, 2017 Holding pen
C 14 Nov, 2017 Chopped
D 14 Nov, 2017 Chopped
E 14 Nov, 2017 Chopped
F 14 Nov, 2017 Chopped
G 14 Nov, 2017 Chopped
H 14 Nov, 2017 Chopped
I 14 Nov, 2017 Holding pen
J 14 Nov, 2017 Chopped
K 14 Nov, 2017 Chopped
L 14 Nov, 2017 Chopped
N 14 Nov, 2017 Rejected
P 14 Nov, 2017 Rejected
T 14 Nov, 2017 Rejected
U 14 Nov, 2017 Holding pen
V 14 Nov, 2017 Chopped
W 14 Nov, 2017 Chopped

CATH Domains (18)

Domain ID Date inserted into CATH Superfamily CATH Status
5xonC01 10 Dec, 2017 3.30.1360.10 Assigned
5xonC02 10 Dec, 2017 2.170.120.12 Assigned
5xonD01 10 Dec, 2017 Holding pen
5xonD02 10 Dec, 2017 1.20.1250.40 Assigned
5xonE01 10 Dec, 2017 3.40.1340.10 Assigned
5xonE02 10 Dec, 2017 3.90.940.20 Assigned
5xonF00 10 Dec, 2017 3.90.940.10 Assigned
5xonG01 10 Dec, 2017 3.30.1490.120 Assigned
5xonG02 10 Dec, 2017 2.40.50.140 Assigned
5xonH00 10 Dec, 2017 2.40.50.140 Assigned
5xonJ00 10 Dec, 2017 1.10.10.60 Assigned
5xonK00 10 Dec, 2017 3.30.1360.10 Assigned
5xonL00 10 Dec, 2017 2.20.28.30 Assigned
5xonV00 16 Dec, 2017 3.30.40.210 Assigned
5xonW01 16 Feb, 2018 3.30.70.940 Assigned
5xonW02 16 Feb, 2018 Write scan list
5xonW03 16 Feb, 2018 Write scan list
5xonW04 16 Feb, 2018 Holding pen

UniProtKB Entries (15)

Accession Gene ID Taxon Description
C4R2R6 C4R2R6_KOMPG Komagataella phaffii GS115 General transcription elongation factor TFIIS
C4R7L2 C4R7L2_KOMPG Komagataella phaffii GS115 RNA polymerase II third largest subunit B44, part of central core
C4R3P8 C4R3P8_KOMPG Komagataella phaffii GS115 RNA polymerase subunit ABC27, common to RNA polymerases I, II, and III
C4QZQ7 C4QZQ7_KOMPG Komagataella phaffii GS115 DNA-directed RNA polymerase subunit beta
C4R370 C4R370_KOMPG Komagataella phaffii GS115 Protein that forms a complex with Spt4p
C4R273 C4R273_KOMPG Komagataella phaffii GS115 DNA-directed RNA polymerases I, II, and III subunit RPABC3
C4R2U9 C4R2U9_KOMPG Komagataella phaffii GS115 RNA polymerase II subunit B32
C4R009 C4R009_KOMPG Komagataella phaffii GS115 RNA polymerase subunit ABC10-beta, common to RNA polymerases I, II, and III
C4R0E6 C4R0E6_KOMPG Komagataella phaffii GS115 Transcription elongation factor SPT4
C4QWA8 C4QWA8_KOMPG Komagataella phaffii GS115 RNA polymerase subunit, found in RNA polymerase complexes I, II, and III
C4R4Y0 C4R4Y0_KOMPG Komagataella phaffii GS115 DNA-directed RNA polymerase subunit
C4R9A1 C4R9A1_KOMPG Komagataella phaffii GS115 RNA polymerase II subunit
C4QY79 C4QY79_KOMPG Komagataella phaffii GS115 DNA-directed RNA polymerase subunit
C4R3Z5 C4R3Z5_KOMPG Komagataella phaffii GS115 RNA polymerase II subunit B12.5
C4R1V1 C4R1V1_KOMPG Komagataella phaffii GS115 RNA polymerase subunit ABC23, common to RNA polymerases I, II, and III