PDB 5x1b

PDB Links
Overview

PDB Information

PDB	5X1B
Method	X-RAY DIFFRACTION
Host Organism
Gene Source
Primary Citation	A nanosecond time-resolved XFEL analysis of structural changes associated with CO release from cytochrome c oxidase. Shimada, A., Kubo, M., Baba, S., Yamashita, K., Hirata, K., Ueno, G., Nomura, T., Kimura, T., Shinzawa-Itoh, K., Baba, J., Hatano, K., Eto, Y., Miyamoto, A., Murakami, H., Kumasaka, T., Owada, S., Tono, K., Yabashi, M., Yamaguchi, Y., Yanagisawa, S., Sakaguchi, M., Ogura, T., Komiya, R., Yan, J., Yamashita, E., Yamamoto, M., Ago, H., Yoshikawa, S., Tsukihara, T. Sci Adv
Header	Oxidoreductase
Released	2017-01-25
Resolution	2.400
CATH Insert Date	14 Nov, 2017

PDB Images (57)

5x1b

PDB 5x1b

5x1bA

PDB Chain 5x1bA

5x1bB

PDB Chain 5x1bB

5x1bC

PDB Chain 5x1bC

5x1bD

PDB Chain 5x1bD

5x1bE

PDB Chain 5x1bE

5x1bF

PDB Chain 5x1bF

5x1bG

PDB Chain 5x1bG

5x1bH

PDB Chain 5x1bH

5x1bI

PDB Chain 5x1bI

5x1bJ

PDB Chain 5x1bJ

5x1bK

PDB Chain 5x1bK

5x1bL

PDB Chain 5x1bL

5x1bM

PDB Chain 5x1bM

5x1bN

PDB Chain 5x1bN

5x1bO

PDB Chain 5x1bO

5x1bP

PDB Chain 5x1bP

5x1bQ

PDB Chain 5x1bQ

5x1bR

PDB Chain 5x1bR

5x1bS

PDB Chain 5x1bS

5x1bT

PDB Chain 5x1bT

5x1bU

PDB Chain 5x1bU

5x1bV

PDB Chain 5x1bV

5x1bW

PDB Chain 5x1bW

5x1bX

PDB Chain 5x1bX

5x1bY

PDB Chain 5x1bY

5x1bZ

PDB Chain 5x1bZ

5x1bA00

CATH Domain 5x1bA00

5x1bB01

CATH Domain 5x1bB01

5x1bB02

CATH Domain 5x1bB02

5x1bC01

CATH Domain 5x1bC01

5x1bC02

CATH Domain 5x1bC02

5x1bD00

CATH Domain 5x1bD00

5x1bE00

CATH Domain 5x1bE00

5x1bF00

CATH Domain 5x1bF00

5x1bG00

CATH Domain 5x1bG00

5x1bH00

CATH Domain 5x1bH00

5x1bI00

CATH Domain 5x1bI00

5x1bJ00

CATH Domain 5x1bJ00

5x1bK00

CATH Domain 5x1bK00

5x1bL00

CATH Domain 5x1bL00

5x1bM00

CATH Domain 5x1bM00

5x1bN00

CATH Domain 5x1bN00

5x1bO01

CATH Domain 5x1bO01

5x1bO02

CATH Domain 5x1bO02

5x1bP01

CATH Domain 5x1bP01

5x1bP02

CATH Domain 5x1bP02

5x1bQ00

CATH Domain 5x1bQ00

5x1bR00

CATH Domain 5x1bR00

5x1bS00

CATH Domain 5x1bS00

5x1bT00

CATH Domain 5x1bT00

5x1bU00

CATH Domain 5x1bU00

5x1bV00

CATH Domain 5x1bV00

5x1bW00

CATH Domain 5x1bW00

5x1bX00

CATH Domain 5x1bX00

5x1bY00

CATH Domain 5x1bY00

5x1bZ00

CATH Domain 5x1bZ00

PDB Prints

PDB Chains (26)

Chain ID	Date inserted into CATH	CATH Status
A	14 Nov, 2017	Chopped
B	14 Nov, 2017	Chopped
C	14 Nov, 2017	Chopped
D	14 Nov, 2017	Chopped
E	14 Nov, 2017	Chopped
F	14 Nov, 2017	Chopped
G	14 Nov, 2017	Chopped
H	14 Nov, 2017	Chopped
I	14 Nov, 2017	Chopped
J	14 Nov, 2017	Chopped
K	14 Nov, 2017	Chopped
L	14 Nov, 2017	Chopped
M	14 Nov, 2017	Chopped
N	14 Nov, 2017	Chopped
O	14 Nov, 2017	Chopped
P	14 Nov, 2017	Chopped
Q	14 Nov, 2017	Chopped
R	14 Nov, 2017	Chopped
S	14 Nov, 2017	Chopped
T	14 Nov, 2017	Chopped
U	14 Nov, 2017	Chopped
V	14 Nov, 2017	Chopped
W	14 Nov, 2017	Chopped
X	14 Nov, 2017	Chopped
Y	14 Nov, 2017	Chopped
Z	14 Nov, 2017	Chopped

CATH Domains (30)

Domain ID	Date inserted into CATH	Superfamily	CATH Status
5x1bA00	10 Dec, 2017	1.20.210.10	Assigned
5x1bB01	10 Dec, 2017	1.10.287.90	Assigned
5x1bB02	10 Dec, 2017	2.60.40.420	Assigned
5x1bC01	10 Dec, 2017	1.10.287.70	Assigned
5x1bC02	10 Dec, 2017	1.20.120.80	Assigned
5x1bD00	10 Dec, 2017	1.10.442.10	Assigned
5x1bE00	10 Dec, 2017	1.25.40.40	Assigned
5x1bF00	10 Dec, 2017	2.60.11.10	Assigned
5x1bG00	10 Dec, 2017	4.10.95.10	Assigned
5x1bH00	10 Dec, 2017	1.10.10.140	Assigned
5x1bI00	10 Dec, 2017	4.10.93.10	Assigned
5x1bJ00	10 Dec, 2017	4.10.91.10	Assigned
5x1bK00	10 Dec, 2017	4.10.51.10	Assigned
5x1bL00	10 Dec, 2017	4.10.49.10	Assigned
5x1bM00	10 Dec, 2017	4.10.81.10	Assigned
5x1bN00	10 Dec, 2017	1.20.210.10	Assigned
5x1bO01	10 Dec, 2017	1.10.287.90	Assigned
5x1bO02	10 Dec, 2017	2.60.40.420	Assigned
5x1bP01	10 Dec, 2017	1.10.287.70	Assigned
5x1bP02	10 Dec, 2017	1.20.120.80	Assigned
5x1bQ00	10 Dec, 2017	1.10.442.10	Assigned
5x1bR00	10 Dec, 2017	1.25.40.40	Assigned
5x1bS00	10 Dec, 2017	2.60.11.10	Assigned
5x1bT00	10 Dec, 2017	4.10.95.10	Assigned
5x1bU00	10 Dec, 2017	1.10.10.140	Assigned
5x1bV00	10 Dec, 2017	4.10.93.10	Assigned
5x1bW00	10 Dec, 2017	4.10.91.10	Assigned
5x1bX00	10 Dec, 2017	4.10.51.10	Assigned
5x1bY00	10 Dec, 2017	4.10.49.10	Assigned
5x1bZ00	10 Dec, 2017	4.10.81.10	Assigned

UniProtKB Entries (26)

Accession	Gene ID	Taxon	Description
P04038	COX6C_BOVIN	Bos taurus	Cytochrome c oxidase subunit 6C
P00423	COX41_BOVIN	Bos taurus	Cytochrome c oxidase subunit 4 isoform 1, mitochondrial
P07470	CX7A1_BOVIN	Bos taurus	Cytochrome c oxidase subunit 7A1, mitochondrial
P00415	COX3_BOVIN	Bos taurus	Cytochrome c oxidase subunit 3
P00428	COX5B_BOVIN	Bos taurus	Cytochrome c oxidase subunit 5B, mitochondrial
P13183	COX7B_BOVIN	Bos taurus	Cytochrome c oxidase subunit 7B, mitochondrial
P00426	COX5A_BOVIN	Bos taurus	Cytochrome c oxidase subunit 5A, mitochondrial
P10175	COX8B_BOVIN	Bos taurus	Cytochrome c oxidase subunit 8B, mitochondrial
P00430	COX7C_BOVIN	Bos taurus	Cytochrome c oxidase subunit 7C, mitochondrial
P00396	COX1_BOVIN	Bos taurus	Cytochrome c oxidase subunit 1
P68530	COX2_BOVIN	Bos taurus	Cytochrome c oxidase subunit 2
P68530	COX2_BOVIN	Bos taurus	Cytochrome c oxidase subunit 2
P00429	CX6B1_BOVIN	Bos taurus	Cytochrome c oxidase subunit 6B1
P00429	CX6B1_BOVIN	Bos taurus	Cytochrome c oxidase subunit 6B1
P00396	COX1_BOVIN	Bos taurus	Cytochrome c oxidase subunit 1
P10175	COX8B_BOVIN	Bos taurus	Cytochrome c oxidase subunit 8B, mitochondrial
P07471	CX6A2_BOVIN	Bos taurus	Cytochrome c oxidase subunit 6A2, mitochondrial
P00430	COX7C_BOVIN	Bos taurus	Cytochrome c oxidase subunit 7C, mitochondrial
P00428	COX5B_BOVIN	Bos taurus	Cytochrome c oxidase subunit 5B, mitochondrial
P13183	COX7B_BOVIN	Bos taurus	Cytochrome c oxidase subunit 7B, mitochondrial
P04038	COX6C_BOVIN	Bos taurus	Cytochrome c oxidase subunit 6C
P07471	CX6A2_BOVIN	Bos taurus	Cytochrome c oxidase subunit 6A2, mitochondrial
P00426	COX5A_BOVIN	Bos taurus	Cytochrome c oxidase subunit 5A, mitochondrial
P00415	COX3_BOVIN	Bos taurus	Cytochrome c oxidase subunit 3
P00423	COX41_BOVIN	Bos taurus	Cytochrome c oxidase subunit 4 isoform 1, mitochondrial
P07470	CX7A1_BOVIN	Bos taurus	Cytochrome c oxidase subunit 7A1, mitochondrial