PDB 5ws5

PDB Information

PDB5WS5
MethodX-RAY DIFFRACTION
Host Organism
Gene Source
Primary Citation
Light-induced structural changes and the site of O=O bond formation in PSII caught by XFEL.
Suga, M., Akita, F., Sugahara, M., Kubo, M., Nakajima, Y., Nakane, T., Yamashita, K., Umena, Y., Nakabayashi, M., Yamane, T., Nakano, T., Suzuki, M., Masuda, T., Inoue, S., Kimura, T., Nomura, T., Yonekura, S., Yu, L.J., Sakamoto, T., Motomura, T., Chen, J.H., Kato, Y., Noguchi, T., Tono, K., Joti, Y., Kameshima, T., Hatsui, T., Nango, E., Tanaka, R., Naitow, H., Matsuura, Y., Yamashita, A., Yamamoto, M., Nureki, O., Yabashi, M., Ishikawa, T., Iwata, S., Shen, J.R.
Nature
HeaderPhotosynthesis
Released2016-12-05
Resolution2.350
CATH Insert Date07 May, 2017

PDB Images (66)

PDB Prints

PDB Chains (39)

Chain ID Date inserted into CATH CATH Status
a 08 May, 2017 Chopped
A 08 May, 2017 Chopped
b 08 May, 2017 Chopped
B 08 May, 2017 Chopped
c 08 May, 2017 Chopped
C 08 May, 2017 Chopped
d 08 May, 2017 Chopped
D 08 May, 2017 Chopped
e 08 May, 2017 Chopped
E 08 May, 2017 Chopped
f 08 May, 2017 Rejected
F 08 May, 2017 Rejected
h 08 May, 2017 Chopped
H 08 May, 2017 Chopped
i 08 May, 2017 Rejected
I 08 May, 2017 Rejected
j 08 May, 2017 Rejected
J 08 May, 2017 Rejected
k 08 May, 2017 Rejected
K 08 May, 2017 Rejected
l 08 May, 2017 Rejected
L 08 May, 2017 Rejected
m 08 May, 2017 Rejected
M 08 May, 2017 Rejected
o 08 May, 2017 Chopped
O 08 May, 2017 Chopped
R 08 May, 2017 Rejected
t 08 May, 2017 Rejected
T 08 May, 2017 Rejected
u 08 May, 2017 Chopped
U 08 May, 2017 Chopped
v 08 May, 2017 Chopped
V 08 May, 2017 Chopped
x 08 May, 2017 Rejected
X 08 May, 2017 Rejected
y 08 May, 2017 Rejected
Y 08 May, 2017 Rejected
z 08 May, 2017 Chopped
Z 08 May, 2017 Chopped

CATH Domains (26)

Domain ID Date inserted into CATH Superfamily CATH Status
5ws5a00 27 May, 2017 Holding pen
5ws5A00 26 May, 2017 Holding pen
5ws5b01 26 May, 2017 Holding pen
5ws5B01 27 May, 2017 Holding pen
5ws5b02 26 May, 2017 3.10.680.10 Assigned
5ws5B02 27 May, 2017 3.10.680.10 Assigned
5ws5c01 26 May, 2017 Holding pen
5ws5C01 27 May, 2017 Holding pen
5ws5c02 26 May, 2017 1.10.10.670 Assigned
5ws5C02 27 May, 2017 1.10.10.670 Assigned
5ws5d00 26 May, 2017 Holding pen
5ws5D00 27 May, 2017 Holding pen
5ws5e00 26 May, 2017 1.20.5.860 Assigned
5ws5E00 27 May, 2017 1.20.5.860 Assigned
5ws5h01 26 May, 2017 1.20.5.880 Assigned
5ws5H01 27 May, 2017 1.20.5.880 Assigned
5ws5o01 27 May, 2017 2.40.160.30 Assigned
5ws5O01 26 May, 2017 2.40.160.30 Assigned
5ws5o02 27 May, 2017 3.30.2050.10 Assigned
5ws5O02 26 May, 2017 3.30.2050.10 Assigned
5ws5u01 27 May, 2017 1.10.150.320 Assigned
5ws5U01 27 May, 2017 1.10.150.320 Assigned
5ws5v00 26 May, 2017 1.10.760.10 Assigned
5ws5V00 27 May, 2017 1.10.760.10 Assigned
5ws5z00 27 May, 2017 1.10.287.740 Assigned
5ws5Z00 27 May, 2017 1.10.287.740 Assigned

UniProtKB Entries (24)

Accession Gene ID Taxon Description
D0VWR5 PSBZ_THEVL Thermosynechococcus vulcanus Photosystem II reaction center protein Z
D0VWR1 PSBB_THEVL Thermosynechococcus vulcanus Photosystem II CP47 reaction center protein
P56152 PSBU_THEVL Thermosynechococcus vulcanus Photosystem II 12 kDa extrinsic protein
P51765 PSBA_THEVL Thermosynechococcus vulcanus Photosystem II protein D1
D0VWR7 PSBC_THEVL Thermosynechococcus vulcanus Photosystem II CP43 reaction center protein
D0VWR1 PSBB_THEVL Thermosynechococcus vulcanus Photosystem II CP47 reaction center protein
D0VWR2 PSBO_THEVL Thermosynechococcus vulcanus Photosystem II manganese-stabilizing polypeptide
D0VWR2 PSBO_THEVL Thermosynechococcus vulcanus Photosystem II manganese-stabilizing polypeptide
P19052 PSBH_THEVL Thermosynechococcus vulcanus Photosystem II reaction center protein H
P12238 PSBE_THEVL Thermosynechococcus vulcanus Cytochrome b559 subunit alpha
D0VWR8 PSBD_THEVL Thermosynechococcus vulcanus Photosystem II D2 protein
P51765 PSBA_THEVL Thermosynechococcus vulcanus Photosystem II protein D1
D0VWR5 PSBZ_THEVL Thermosynechococcus vulcanus Photosystem II reaction center protein Z
P56152 PSBU_THEVL Thermosynechococcus vulcanus Photosystem II 12 kDa extrinsic protein
D0VWR4 PSBX_THEVL Thermosynechococcus vulcanus Photosystem II reaction center protein X
D0VWR4 PSBX_THEVL Thermosynechococcus vulcanus Photosystem II reaction center protein X
Q7DGD4 PSBJ_THEVL Thermosynechococcus vulcanus Photosystem II reaction center protein J
D0VWR7 PSBC_THEVL Thermosynechococcus vulcanus Photosystem II CP43 reaction center protein
P0A387 CY550_THEVL Thermosynechococcus vulcanus Cytochrome c-550
P19052 PSBH_THEVL Thermosynechococcus vulcanus Photosystem II reaction center protein H
Q7DGD4 PSBJ_THEVL Thermosynechococcus vulcanus Photosystem II reaction center protein J
P0A387 CY550_THEVL Thermosynechococcus vulcanus Cytochrome c-550
P12238 PSBE_THEVL Thermosynechococcus vulcanus Cytochrome b559 subunit alpha
D0VWR8 PSBD_THEVL Thermosynechococcus vulcanus Photosystem II D2 protein