PDB 5vf3
PDB Information
| PDB | 5VF3 |
| Method | ELECTRON MICROSCOPY |
| Host Organism | |
| Gene Source | |
| Primary Citation | Cryo-EM structure of the bacteriophage T4 isometric head at 3.3- angstrom resolution and its relevance to the assembly of icosahedral viruses.
Proc. Natl. Acad. Sci. U.S.A.
|
| Header | Virus |
| Released | 2017-04-06 |
| Resolution | 3.300 |
| CATH Insert Date | 14 Nov, 2017 |
PDB Images (38)
5vf3
PDB 5vf3
5vf3a
PDB Chain 5vf3a
5vf3A
PDB Chain 5vf3A
5vf3B
PDB Chain 5vf3B
5vf3C
PDB Chain 5vf3C
5vf3D
PDB Chain 5vf3D
5vf3E
PDB Chain 5vf3E
5vf3F
PDB Chain 5vf3F
5vf3G
PDB Chain 5vf3G
5vf3H
PDB Chain 5vf3H
5vf3I
PDB Chain 5vf3I
5vf3J
PDB Chain 5vf3J
5vf3K
PDB Chain 5vf3K
5vf3L
PDB Chain 5vf3L
5vf3O
PDB Chain 5vf3O
5vf3P
PDB Chain 5vf3P
5vf3Q
PDB Chain 5vf3Q
5vf3R
PDB Chain 5vf3R
5vf3S
PDB Chain 5vf3S
5vf3T
PDB Chain 5vf3T
5vf3U
PDB Chain 5vf3U
5vf3V
PDB Chain 5vf3V
5vf3W
PDB Chain 5vf3W
5vf3X
PDB Chain 5vf3X
5vf3Y
PDB Chain 5vf3Y
5vf3z
PDB Chain 5vf3z
5vf3Z
PDB Chain 5vf3Z
5vf3O00
CATH Domain 5vf3O00
5vf3P00
CATH Domain 5vf3P00
5vf3Q00
CATH Domain 5vf3Q00
5vf3R00
CATH Domain 5vf3R00
5vf3S00
CATH Domain 5vf3S00
5vf3T00
CATH Domain 5vf3T00
5vf3U00
CATH Domain 5vf3U00
5vf3V00
CATH Domain 5vf3V00
5vf3W00
CATH Domain 5vf3W00
5vf3X00
CATH Domain 5vf3X00
5vf3Y00
CATH Domain 5vf3Y00
PDB Prints
PDB Chains (26)
| Chain ID | Date inserted into CATH | CATH Status |
|---|---|---|
| a | 14 Nov, 2017 | Domchop review |
| A | 14 Nov, 2017 | Holding pen |
| B | 14 Nov, 2017 | Holding pen |
| C | 14 Nov, 2017 | Holding pen |
| D | 14 Nov, 2017 | Domchop review |
| E | 14 Nov, 2017 | Holding pen |
| F | 14 Nov, 2017 | Holding pen |
| G | 14 Nov, 2017 | Holding pen |
| H | 14 Nov, 2017 | Holding pen |
| I | 14 Nov, 2017 | Holding pen |
| J | 14 Nov, 2017 | Holding pen |
| K | 14 Nov, 2017 | Holding pen |
| L | 14 Nov, 2017 | Holding pen |
| O | 14 Nov, 2017 | Chopped |
| P | 14 Nov, 2017 | Chopped |
| Q | 14 Nov, 2017 | Chopped |
| R | 14 Nov, 2017 | Chopped |
| S | 14 Nov, 2017 | Chopped |
| T | 14 Nov, 2017 | Chopped |
| U | 14 Nov, 2017 | Chopped |
| V | 14 Nov, 2017 | Chopped |
| W | 14 Nov, 2017 | Chopped |
| X | 14 Nov, 2017 | Chopped |
| Y | 14 Nov, 2017 | Chopped |
| z | 14 Nov, 2017 | Rejected |
| Z | 14 Nov, 2017 | Rejected |
CATH Domains (11)
| Domain ID | Date inserted into CATH | Superfamily | CATH Status |
|---|---|---|---|
| 5vf3O00 | 10 Dec, 2017 | 3.90.930.20 | Assigned |
| 5vf3P00 | 10 Dec, 2017 | 3.90.930.20 | Assigned |
| 5vf3Q00 | 10 Dec, 2017 | 3.90.930.20 | Assigned |
| 5vf3R00 | 10 Dec, 2017 | 3.90.930.20 | Assigned |
| 5vf3S00 | 10 Dec, 2017 | 3.90.930.20 | Assigned |
| 5vf3T00 | 10 Dec, 2017 | 3.90.930.20 | Assigned |
| 5vf3U00 | 10 Dec, 2017 | 3.90.930.20 | Assigned |
| 5vf3V00 | 10 Dec, 2017 | 3.90.930.20 | Assigned |
| 5vf3W00 | 10 Dec, 2017 | 3.90.930.20 | Assigned |
| 5vf3X00 | 10 Dec, 2017 | 3.90.930.20 | Assigned |
| 5vf3Y00 | 10 Dec, 2017 | 3.90.930.20 | Assigned |
UniProtKB Entries (13)
| Accession | Gene ID | Taxon | Description |
|---|---|---|---|
| P03715 | SOC_BPT4 | Escherichia virus T4 | Small outer capsid protein |
| P03715 | SOC_BPT4 | Escherichia virus T4 | Small outer capsid protein |
| P03715 | SOC_BPT4 | Escherichia virus T4 | Small outer capsid protein |
| P19896 | CAPSP_BPT4 | Escherichia virus T4 | Capsid vertex protein |
| P03715 | SOC_BPT4 | Escherichia virus T4 | Small outer capsid protein |
| P03715 | SOC_BPT4 | Escherichia virus T4 | Small outer capsid protein |
| P03715 | SOC_BPT4 | Escherichia virus T4 | Small outer capsid protein |
| P03715 | SOC_BPT4 | Escherichia virus T4 | Small outer capsid protein |
| P03715 | SOC_BPT4 | Escherichia virus T4 | Small outer capsid protein |
| P18056 | HOC_BPT4 | Escherichia virus T4 | Highly immunogenic outer capsid protein |
| P03715 | SOC_BPT4 | Escherichia virus T4 | Small outer capsid protein |
| P03715 | SOC_BPT4 | Escherichia virus T4 | Small outer capsid protein |
| P03715 | SOC_BPT4 | Escherichia virus T4 | Small outer capsid protein |