PDB 5oqm
PDB Information
| PDB | 5OQM |
| Method | ELECTRON MICROSCOPY |
| Host Organism | Escherichia coli BL21(DE3) |
| Gene Source | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) |
| Primary Citation | Structures of transcription pre-initiation complex with TFIIH and Mediator.
Nature
|
| Header | Transcription |
| Released | 2017-08-13 |
| Resolution | 5.800 |
| CATH Insert Date | 03 Jun, 2018 |
PDB Images (47)
5oqm
PDB 5oqm
5oqm0
PDB Chain 5oqm0
5oqm1
PDB Chain 5oqm1
5oqm2
PDB Chain 5oqm2
5oqm3
PDB Chain 5oqm3
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PDB Chain 5oqm4
5oqm5
PDB Chain 5oqm5
5oqm6
PDB Chain 5oqm6
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PDB Chain 5oqm7
5oqma
PDB Chain 5oqma
5oqmA
PDB Chain 5oqmA
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PDB Chain 5oqmB
5oqmc
PDB Chain 5oqmc
5oqmC
PDB Chain 5oqmC
5oqmd
PDB Chain 5oqmd
5oqmD
PDB Chain 5oqmD
5oqme
PDB Chain 5oqme
5oqmE
PDB Chain 5oqmE
5oqmf
PDB Chain 5oqmf
5oqmF
PDB Chain 5oqmF
5oqmg
PDB Chain 5oqmg
5oqmG
PDB Chain 5oqmG
5oqmh
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5oqmH
PDB Chain 5oqmH
5oqmi
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5oqmI
PDB Chain 5oqmI
5oqmj
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5oqmJ
PDB Chain 5oqmJ
5oqmk
PDB Chain 5oqmk
5oqmK
PDB Chain 5oqmK
5oqml
PDB Chain 5oqml
5oqmL
PDB Chain 5oqmL
5oqmm
PDB Chain 5oqmm
5oqmM
PDB Chain 5oqmM
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PDB Chain 5oqmn
5oqmN
PDB Chain 5oqmN
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PDB Chain 5oqmQ
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PDB Chain 5oqmR
5oqmT
PDB Chain 5oqmT
5oqmU
PDB Chain 5oqmU
5oqmV
PDB Chain 5oqmV
5oqmW
PDB Chain 5oqmW
5oqmX
PDB Chain 5oqmX
5oqmZ
PDB Chain 5oqmZ
PDB Prints
PDB Chains (46)
| Chain ID | Date inserted into CATH | CATH Status |
|---|---|---|
| 0 | 03 Jun, 2018 | Rejected |
| 1 | 03 Jun, 2018 | Rejected |
| 2 | 03 Jun, 2018 | Rejected |
| 3 | 03 Jun, 2018 | Rejected |
| 4 | 03 Jun, 2018 | Rejected |
| 5 | 03 Jun, 2018 | Rejected |
| 6 | 03 Jun, 2018 | Rejected |
| 7 | 03 Jun, 2018 | Rejected |
| a | 03 Jun, 2018 | Rejected |
| A | 03 Jun, 2018 | Rejected |
| b | 03 Jun, 2018 | Rejected |
| B | 03 Jun, 2018 | Rejected |
| c | 03 Jun, 2018 | Rejected |
| C | 03 Jun, 2018 | Rejected |
| d | 03 Jun, 2018 | Rejected |
| D | 03 Jun, 2018 | Rejected |
| e | 03 Jun, 2018 | Rejected |
| E | 03 Jun, 2018 | Rejected |
| f | 03 Jun, 2018 | Rejected |
| F | 03 Jun, 2018 | Rejected |
| g | 03 Jun, 2018 | Rejected |
| G | 03 Jun, 2018 | Rejected |
| h | 03 Jun, 2018 | Rejected |
| H | 03 Jun, 2018 | Rejected |
| i | 03 Jun, 2018 | Rejected |
| I | 03 Jun, 2018 | Rejected |
| j | 03 Jun, 2018 | Rejected |
| J | 03 Jun, 2018 | Rejected |
| k | 03 Jun, 2018 | Rejected |
| K | 03 Jun, 2018 | Rejected |
| l | 03 Jun, 2018 | Rejected |
| L | 03 Jun, 2018 | Rejected |
| m | 03 Jun, 2018 | Rejected |
| M | 03 Jun, 2018 | Rejected |
| n | 03 Jun, 2018 | Rejected |
| N | 03 Jun, 2018 | Rejected |
| o | 03 Jun, 2018 | Rejected |
| O | 03 Jun, 2018 | Rejected |
| Q | 03 Jun, 2018 | Rejected |
| R | 03 Jun, 2018 | Rejected |
| T | 03 Jun, 2018 | Rejected |
| U | 03 Jun, 2018 | Rejected |
| V | 03 Jun, 2018 | Rejected |
| W | 03 Jun, 2018 | Rejected |
| X | 03 Jun, 2018 | Rejected |
| Z | 03 Jun, 2018 | Rejected |
CATH Domains (0)
| Domain ID | Date inserted into CATH | Superfamily | CATH Status |
|---|
UniProtKB Entries (36)
| Accession | Gene ID | Taxon | Description |
|---|---|---|---|
| Q99278 | MED11_YEAST | Saccharomyces cerevisiae S288C | Mediator of RNA polymerase II transcription subunit 11 |
| P38782 | MED6_YEAST | Saccharomyces cerevisiae S288C | Mediator of RNA polymerase II transcription subunit 6 |
| P20434 | RPAB1_YEAST | Saccharomyces cerevisiae S288C | DNA-directed RNA polymerases I, II, and III subunit RPABC1 |
| P06839 | RAD3_YEAST | Saccharomyces cerevisiae S288C | General transcription and DNA repair factor IIH helicase subunit XPD |
| P29055 | TF2B_YEAST | Saccharomyces cerevisiae S288C | Transcription initiation factor IIB |
| P20435 | RPAB2_YEAST | Saccharomyces cerevisiae S288C | DNA-directed RNA polymerases I, II, and III subunit RPABC2 |
| P34162 | MED20_YEAST | Saccharomyces cerevisiae S288C | Mediator of RNA polymerase II transcription subunit 20 |
| P32774 | T2AG_YEAST | Saccharomyces cerevisiae S288C | Transcription initiation factor IIA subunit 2 |
| P32585 | MED18_YEAST | Saccharomyces cerevisiae S288C | Mediator of RNA polymerase II transcription subunit 18 |
| P16370 | RPB3_YEAST | Saccharomyces cerevisiae S288C | DNA-directed RNA polymerase II subunit RPB3 |
| Q04673 | SSL1_YEAST | Saccharomyces cerevisiae S288C | General transcription and DNA repair factor IIH subunit SSL1 |
| Q02939 | TFB2_YEAST | Saccharomyces cerevisiae S288C | General transcription and DNA repair factor IIH subunit TFB2 |
| P34087 | RPB7_YEAST | Saccharomyces cerevisiae S288C | DNA-directed RNA polymerase II subunit RPB7 |
| Q08278 | MED7_YEAST | Saccharomyces cerevisiae S288C | Mediator of RNA polymerase II transcription subunit 7 |
| P08518 | RPB2_YEAST | Saccharomyces cerevisiae S288C | DNA-directed RNA polymerase II subunit RPB2 |
| P38902 | RPB11_YEAST | Saccharomyces cerevisiae S288C | DNA-directed RNA polymerase II subunit RPB11 |
| P41896 | T2FB_YEAST | Saccharomyces cerevisiae S288C | Transcription initiation factor IIF subunit beta |
| P20433 | RPB4_YEAST | Saccharomyces cerevisiae S288C | DNA-directed RNA polymerase II subunit RPB4 |
| Q00578 | RAD25_YEAST | Saccharomyces cerevisiae S288C | General transcription and DNA repair factor IIH helicase subunit XPB |
| P22139 | RPAB5_YEAST | Saccharomyces cerevisiae S288C | DNA-directed RNA polymerases I, II, and III subunit RPABC5 |
| P13393 | TBP_YEAST | Saccharomyces cerevisiae S288C | TATA-box-binding protein |
| P47822 | MED21_YEAST | Saccharomyces cerevisiae S288C | Mediator of RNA polymerase II transcription subunit 21 |
| P32776 | TFB1_YEAST | Saccharomyces cerevisiae S288C | General transcription and DNA repair factor IIH subunit TFB1 |
| P20436 | RPAB3_YEAST | Saccharomyces cerevisiae S288C | DNA-directed RNA polymerases I, II, and III subunit RPABC3 |
| P38633 | MED31_YEAST | Saccharomyces cerevisiae S288C | Mediator of RNA polymerase II transcription subunit 31 |
| P27999 | RPB9_YEAST | Saccharomyces cerevisiae S288C | DNA-directed RNA polymerase II subunit RPB9 |
| P32570 | MED22_YEAST | Saccharomyces cerevisiae S288C | Mediator of RNA polymerase II transcription subunit 22 |
| Q03290 | TFB3_YEAST | Saccharomyces cerevisiae S288C | RNA polymerase II transcription factor B subunit 3 |
| P04050 | RPB1_YEAST | Saccharomyces cerevisiae S288C | DNA-directed RNA polymerase II subunit RPB1 |
| P36100 | T2EA_YEAST | Saccharomyces cerevisiae S288C | Transcription initiation factor IIE subunit alpha |
| P32773 | TOA1_YEAST | Saccharomyces cerevisiae S288C | Transcription initiation factor IIA large subunit |
| P40422 | RPAB4_YEAST | Saccharomyces cerevisiae S288C | DNA-directed RNA polymerases I, II, and III subunit RPABC4 |
| Q3E7C1 | TFB5_YEAST | Saccharomyces cerevisiae S288C | General transcription and DNA repair factor IIH subunit TFB5 |
| Q12004 | TFB4_YEAST | Saccharomyces cerevisiae S288C | General transcription and DNA repair factor IIH subunit TFB4 |
| P32569 | MED17_YEAST | Saccharomyces cerevisiae S288C | Mediator of RNA polymerase II transcription subunit 17 |
| P38304 | MED8_YEAST | Saccharomyces cerevisiae S288C | Mediator of RNA polymerase II transcription subunit 8 |
