PDB 5iyd

PDB Information

PDB5IYD
MethodELECTRON MICROSCOPY
Host OrganismEscherichia coli
Gene SourceHomo sapiens
Primary Citation
Near-atomic resolution visualization of human transcription promoter opening.
He, Y., Yan, C., Fang, J., Inouye, C., Tjian, R., Ivanov, I., Nogales, E.
Nature
HeaderTranscription, Transferase/Dna/Rna
Released2016-03-24
Resolution3.900
CATH Insert Date29 May, 2016

PDB Images (43)

PDB Prints

PDB Chains (23)

Chain ID Date inserted into CATH CATH Status
A 30 May, 2016 Holding pen
B 30 May, 2016 Holding pen
C 30 May, 2016 Chopped
D 30 May, 2016 Chopped
E 30 May, 2016 Chopped
F 30 May, 2016 Chopped
G 30 May, 2016 Chopped
H 30 May, 2016 Chopped
I 30 May, 2016 Holding pen
J 30 May, 2016 Chopped
K 30 May, 2016 Chopped
L 30 May, 2016 Chopped
M 30 May, 2016 Chopped
N 30 May, 2016 Holding pen
O 30 May, 2016 Chopped
P 30 May, 2016 Chopped
Q 30 May, 2016 Holding pen
R 30 May, 2016 Holding pen
S 30 May, 2016 Chopped
T 30 May, 2016 Domchop review
X 30 May, 2016 Rejected
Y 30 May, 2016 Rejected
Z 30 May, 2016 Rejected

CATH Domains (19)

Domain ID Date inserted into CATH Superfamily CATH Status
5iydC01 19 Jul, 2016 3.30.1360.10 Assigned
5iydC02 19 Jul, 2016 2.170.120.12 Assigned
5iydD00 19 Jul, 2016 1.20.1250.40 Assigned
5iydE01 19 Jul, 2016 3.40.1340.10 Assigned
5iydE02 19 Jul, 2016 3.90.940.20 Assigned
5iydF00 19 Jul, 2016 3.90.940.10 Assigned
5iydG01 19 Jul, 2016 3.30.1490.120 Assigned
5iydG02 19 Jul, 2016 2.40.50.140 Assigned
5iydH01 19 Jul, 2016 2.40.50.140 Assigned
5iydJ00 19 Jul, 2016 1.10.10.60 Assigned
5iydK00 19 Jul, 2016 3.30.1360.10 Assigned
5iydL00 19 Jul, 2016 2.20.28.30 Assigned
5iydM01 28 Mar, 2018 1.10.472.10 Assigned
5iydM02 28 Mar, 2018 1.10.472.10 Assigned
5iydO01 19 Jul, 2016 1.10.287.190 Assigned
5iydO02 19 Jul, 2016 2.30.18.10 Assigned
5iydP01 19 Jul, 2016 3.30.310.10 Assigned
5iydP02 19 Jul, 2016 3.30.310.10 Assigned
5iydS00 29 Nov, 2016 Holding pen

UniProtKB Entries (20)

Accession Gene ID Taxon Description
P36954 RPB9_HUMAN Homo sapiens DNA-directed RNA polymerase II subunit RPB9
P52655 TF2AA_HUMAN Homo sapiens Transcription initiation factor IIA subunit 1
Q00403 TF2B_HUMAN Homo sapiens Transcription initiation factor IIB
P20226 TBP_HUMAN Homo sapiens TATA-box-binding protein
P29083 T2EA_HUMAN Homo sapiens General transcription factor IIE subunit 1
P52657 T2AG_HUMAN Homo sapiens Transcription initiation factor IIA subunit 2
P62487 RPB7_HUMAN Homo sapiens DNA-directed RNA polymerase II subunit RPB7
P52435 RPB11_HUMAN Homo sapiens DNA-directed RNA polymerase II subunit RPB11-a
P30876 RPB2_HUMAN Homo sapiens DNA-directed RNA polymerase II subunit RPB2
P29084 T2EB_HUMAN Homo sapiens Transcription initiation factor IIE subunit beta
P53803 RPAB4_HUMAN Homo sapiens DNA-directed RNA polymerases I, II, and III subunit RPABC4
P35269 T2FA_HUMAN Homo sapiens General transcription factor IIF subunit 1
P19387 RPB3_HUMAN Homo sapiens DNA-directed RNA polymerase II subunit RPB3
P61218 RPAB2_HUMAN Homo sapiens DNA-directed RNA polymerases I, II, and III subunit RPABC2
P13984 T2FB_HUMAN Homo sapiens General transcription factor IIF subunit 2
P24928 RPB1_HUMAN Homo sapiens DNA-directed RNA polymerase II subunit RPB1
P19388 RPAB1_HUMAN Homo sapiens DNA-directed RNA polymerases I, II, and III subunit RPABC1
P62875 RPAB5_HUMAN Homo sapiens DNA-directed RNA polymerases I, II, and III subunit RPABC5
O15514 RPB4_HUMAN Homo sapiens DNA-directed RNA polymerase II subunit RPB4
P52434 RPAB3_HUMAN Homo sapiens DNA-directed RNA polymerases I, II, and III subunit RPABC3